Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.15G185700 Glycine max HOM05D002165 ORTHO05D001531 2.2e-38 161.8 80 100.0
Glyma.09G080700 Glycine max HOM05D002165 ORTHO05D001531 1.9e-37 158.7 80 97.5
Lj6g0008561 Lotus japonicus HOM05D002165 ORTHO05D001531 2.8e-33 144.8 80 87.5
Ca_02322_v3 Cicer arietinum L. HOM05D002165 ORTHO05D001531 2.6e-31 138.3 80 87.5
Ca_30364_v3 Cicer arietinum L. HOM05D002165 ORTHO05D001531 2.6e-31 138.3 80 87.5
Phvul.009G221300 Phaseolus vulgaris HOM05D002165 ORTHO05D001531 2.5e-29 131.7 79 83.5
Medtr2g044970 Medicago truncatula HOM05D002165 ORTHO05D001531 9.4e-29 129.8 80 83.8
Phvul.009G221200 Phaseolus vulgaris HOM05D002165 ORTHO05D001531 2.7e-28 128.3 77 84.4
Lalb_Chr08g0232971 Lupinus albus HOM05D002165 ORTHO05D001531 3.6e-28 127.9 80 80.0
Psat1g016840 Pisum sativum HOM05D002165 ORTHO05D001531 6.7e-27 123.6 80 81.2
Psat1g017000 Pisum sativum HOM05D002165 ORTHO05D001531 1.7e-25 119.0 80 78.8
TPR.G29438 Trifolium pratense HOM05D002165 ORTHO05D001531 3.1e-24 114.8 73 80.8
Glyma.15G185600 Glycine max HOM05D002165 ORTHO05D001531 1.2e-23 112.8 63 81.0
Lalb_Chr11g0073701 Lupinus albus HOM05D002165 ORTHO05D001531 3.4e-23 111.3 80 75.0
Lalb_Chr11g0073741 Lupinus albus HOM05D002165 ORTHO05D001531 2.2e-22 108.6 80 75.0
Medtr2g044960 Medicago truncatula HOM05D002165 ORTHO05D001531 2.2e-22 108.6 80 71.2
Lalb_Chr11g0073711 Lupinus albus HOM05D002165 ORTHO05D001531 2.9e-22 108.2 73 78.1
TPR.G29235 Trifolium pratense HOM05D002165 ORTHO05D001531 8.5e-22 106.7 80 71.2
Glyma.09G080800 Glycine max HOM05D002165 ORTHO05D001531 1.4e-21 105.9 63 79.4
Psat4g020920 Pisum sativum HOM05D002165 ORTHO05D001531 1.4e-21 105.9 80 70.0
Lalb_Chr11g0073691 Lupinus albus HOM05D002165 ORTHO05D001531 2.5e-21 105.1 80 72.5
Lalb_Chr11g0073721 Lupinus albus HOM05D002165 ORTHO05D001531 2.5e-21 105.1 73 76.7
Lalb_Chr07g0181571 Lupinus albus HOM05D002165 ORTHO05D001531 1.6e-20 102.4 80 66.2
Phvul.009G221100 Phaseolus vulgaris HOM05D002165 ORTHO05D001531 2.7e-20 101.7 80 66.2
Phvul.009G221400 Phaseolus vulgaris HOM05D002165 ORTHO05D001531 6.1e-20 100.5 80 65.0
Glyma.15G185400 Glycine max HOM05D002165 ORTHO05D001531 5.1e-19 97.4 84 69.0
Glyma.17G042500 Glycine max HOM05D002165 ORTHO05D001531 5.1e-19 97.4 81 70.4
Phvul.003G124200 Phaseolus vulgaris HOM05D002165 ORTHO05D001531 2.6e-18 95.1 81 66.7
Glyma.13G117400 Glycine max HOM05D002165 ORTHO05D001531 9.7e-18 93.2 83 66.3
Ca_21362_v3 Cicer arietinum L. HOM05D002165 ORTHO05D001531 1.7e-17 92.4 79 62.0
Medtr4g124220 Medicago truncatula HOM05D002165 ORTHO05D001531 7.0e-16 87.0 83 61.4
Lalb_Chr12g0200511 Lupinus albus HOM05D002165 ORTHO05D001531 9.1e-16 86.7 80 62.5
QL06p014681 Quercus lobata HOM05D002165 ORTHO05D001531 9.1e-16 86.7 69 60.9
Lalb_Chr13g0299051 Lupinus albus HOM05D002165 ORTHO05D001531 4.5e-15 84.3 82 54.9
MD13G1137400 Malus domestica HOM05D002165 ORTHO05D001531 5.9e-15 84.0 76 59.2
GSVIVG01017704001 Vitis vinifera HOM05D002165 ORTHO05D001531 2.2e-14 82.0 72 61.1
MD16G1133300 Malus domestica HOM05D002165 ORTHO05D001531 2.9e-14 81.6 76 59.2
GSVIVG01017705001 Vitis vinifera HOM05D002165 ORTHO05D001531 5.0e-14 80.9 72 59.7
GSVIVG01017706001 Vitis vinifera HOM05D002165 ORTHO05D001531 5.0e-14 80.9 72 59.7
Prupe.1G207900 Prunus persica HOM05D002165 ORTHO05D001531 1.1e-13 79.7 75 60.0
Phvul.009G221500 Phaseolus vulgaris HOM05D002165 ORTHO05D001531 1.5e-13 79.3 69 66.7
MD13G1137300 Malus domestica HOM05D002165 ORTHO05D001531 1.9e-13 79.0 73 60.3
RcHm_v2.0_Chr4g0427981 Rosa chinensis HOM05D002165 ORTHO05D001531 1.9e-13 79.0 71 59.2
FvH4_4g21750 Fragaria vesca HOM05D002165 ORTHO05D001531 7.2e-13 77.0 71 57.7
FAN07G0342 Fragaria x ananassa HOM05D002165 ORTHO05D001531 7.2e-13 77.0 71 57.7
FAN12G3878 Fragaria x ananassa HOM05D002165 ORTHO05D001531 7.2e-13 77.0 71 57.7
FAN17G1996 Fragaria x ananassa HOM05D002165 ORTHO05D001531 7.2e-13 77.0 71 57.7
GSVIVG01017707001 Vitis vinifera HOM05D002165 ORTHO05D001531 9.4e-13 76.6 72 58.3
CiPaw.01G127300 Carya illinoinensis HOM05D002165 ORTHO05D001531 1.2e-12 76.3 75 53.3
Aa31LG11G9930 Aethionema arabicum HOM05D002165 ORTHO05D001531 1.8e-11 72.4 76 51.3
Potri.010G003900 Populus trichocarpa HOM05D002165 ORTHO05D001531 4.0e-11 71.2 75 56.0
CiPaw.02G068700 Carya illinoinensis HOM05D002165 ORTHO05D001531 8.8e-11 70.1 75 48.0
BcaC04g23632 Brassica carinata HOM05D002165 ORTHO05D001531 1.1e-10 69.7 76 51.3
A09p05720 Brassica napus HOM05D002165 ORTHO05D001531 1.1e-10 69.7 76 51.3
C09p06310 Brassica napus HOM05D002165 ORTHO05D001531 1.1e-10 69.7 76 51.3
BolC9t53551H Brassica oleracea HOM05D002165 ORTHO05D001531 1.1e-10 69.7 76 51.3
BraA09t36213Z Brassica rapa HOM05D002165 ORTHO05D001531 1.1e-10 69.7 76 51.3
BcaB04g19717 Brassica carinata HOM05D002165 ORTHO05D001531 2.0e-10 68.9 76 52.6
AUR62002532 Chenopodium quinoa HOM05D002165 ORTHO05D001531 2.0e-10 68.9 73 56.2
MELO3C006762.2 Cucumis melo HOM05D002165 ORTHO05D001531 2.0e-10 68.9 88 52.3
Sabra10G0003300 Salix brachista HOM05D002165 ORTHO05D001531 2.6e-10 68.6 63 55.6
CsaV3_3G015630 Cucumis sativus L. HOM05D002165 ORTHO05D001531 3.3e-10 68.2 70 58.6
CARHR186860 Cardamine hirsuta HOM05D002165 ORTHO05D001531 4.4e-10 67.8 78 51.3
AUR62023661 Chenopodium quinoa HOM05D002165 ORTHO05D001531 4.4e-10 67.8 70 57.1
Manes.03G213400 Manihot esculenta HOM05D002165 ORTHO05D001531 5.7e-10 67.4 76 51.3
PSO761G0534 Papaver somniferum HOM05D002165 ORTHO05D001531 5.7e-10 67.4 72 54.2
AL3G16610 Arabidopsis lyrata HOM05D002165 ORTHO05D001531 7.5e-10 67.0 81 50.6
EL10Ac3g06229 Beta vulgaris HOM05D002165 ORTHO05D001531 7.5e-10 67.0 69 52.2
BcaC01g04301 Brassica carinata HOM05D002165 ORTHO05D001531 7.5e-10 67.0 77 49.4
C03p41790 Brassica napus HOM05D002165 ORTHO05D001531 7.5e-10 67.0 77 49.4
BolC3t16462H Brassica oleracea HOM05D002165 ORTHO05D001531 7.5e-10 67.0 77 49.4
Gohir.A09G242300 Gossypium hirsutum HOM05D002165 ORTHO05D001531 7.5e-10 67.0 73 54.8
Aa31LG5G16230 Aethionema arabicum HOM05D002165 ORTHO05D001531 1.3e-09 66.2 77 48.1
AT3G05858 Arabidopsis thaliana HOM05D002165 ORTHO05D001531 1.3e-09 66.2 83 49.4
Carub.0003s0521 Capsella rubella HOM05D002165 ORTHO05D001531 1.3e-09 66.2 75 52.0
Gohir.D09G243000 Gossypium hirsutum HOM05D002165 ORTHO05D001531 1.3e-09 66.2 73 54.8
Gorai.006G266800 Gossypium raimondii HOM05D002165 ORTHO05D001531 1.3e-09 66.2 73 54.8
BcaB04g19240 Brassica carinata HOM05D002165 ORTHO05D001531 2.2e-09 65.5 77 49.4
A03p34320 Brassica napus HOM05D002165 ORTHO05D001531 2.2e-09 65.5 77 49.4
BraA03t12608Z Brassica rapa HOM05D002165 ORTHO05D001531 2.2e-09 65.5 77 49.4
Carub.0006s2437 Capsella rubella HOM05D002165 ORTHO05D001531 2.8e-09 65.1 78 51.3
Thhalv10005460m.g Eutrema salsugineum HOM05D002165 ORTHO05D001531 2.8e-09 65.1 77 49.4
Nn4g25284 Nelumbo nucifera HOM05D002165 ORTHO05D001531 2.8e-09 65.1 41 73.2
AL6G38560 Arabidopsis lyrata HOM05D002165 ORTHO05D001531 3.7e-09 64.7 78 51.3
CARHR080310 Cardamine hirsuta HOM05D002165 ORTHO05D001531 3.7e-09 64.7 76 51.3
Cpa.g.sc146.6 Carica papaya HOM05D002165 ORTHO05D001531 3.7e-09 64.7 66 53.0
Sed0018176 Sechium edule HOM05D002165 ORTHO05D001531 3.7e-09 64.7 84 50.0
AT5G26620 Arabidopsis thaliana HOM05D002165 ORTHO05D001531 4.8e-09 64.3 51 60.8
BcaB07g29941 Brassica carinata HOM05D002165 ORTHO05D001531 4.8e-09 64.3 76 48.7
Gohir.A02G059800 Gossypium hirsutum HOM05D002165 ORTHO05D001531 4.8e-09 64.3 76 52.6
Gohir.D02G065400 Gossypium hirsutum HOM05D002165 ORTHO05D001531 4.8e-09 64.3 76 52.6
Gorai.005G074100 Gossypium raimondii HOM05D002165 ORTHO05D001531 4.8e-09 64.3 76 52.6
BcaNung03907 Brassica carinata HOM05D002165 ORTHO05D001531 6.3e-09 63.9 76 48.7
A06p36950 Brassica napus HOM05D002165 ORTHO05D001531 6.3e-09 63.9 76 48.7
BraA02t08873Z Brassica rapa HOM05D002165 ORTHO05D001531 6.3e-09 63.9 76 48.7
BraA06t26620Z Brassica rapa HOM05D002165 ORTHO05D001531 6.3e-09 63.9 76 48.7
Thhalv10021847m.g Eutrema salsugineum HOM05D002165 ORTHO05D001531 6.3e-09 63.9 82 47.6
BcaC03g17834 Brassica carinata HOM05D002165 ORTHO05D001531 8.2e-09 63.5 76 48.7
BcaNung03681 Brassica carinata HOM05D002165 ORTHO05D001531 8.2e-09 63.5 76 48.7
BcaNung06223 Brassica carinata HOM05D002165 ORTHO05D001531 8.2e-09 63.5 76 48.7
A02p39040 Brassica napus HOM05D002165 ORTHO05D001531 8.2e-09 63.5 76 48.7
C02p58650 Brassica napus HOM05D002165 ORTHO05D001531 8.2e-09 63.5 76 48.7
C07p41550 Brassica napus HOM05D002165 ORTHO05D001531 8.2e-09 63.5 76 48.7
BolC2t11925H Brassica oleracea HOM05D002165 ORTHO05D001531 8.2e-09 63.5 76 48.7
BolC7t44687H Brassica oleracea HOM05D002165 ORTHO05D001531 8.2e-09 63.5 76 48.7
Eucgr.H01332 Eucalyptus grandis HOM05D002165 ORTHO05D001531 1.1e-08 63.2 74 47.3
Sp3g04720 Schrenkiella parvula HOM05D002165 ORTHO05D001531 1.1e-08 63.2 82 48.8
TAR633G1086 Trochodendron aralioides HOM05D002165 ORTHO05D001531 1.1e-08 63.2 75 48.0
Cpa.g.sc48.225 Carica papaya HOM05D002165 ORTHO05D001531 1.4e-08 62.8 77 48.1
Ciclev10013801m.g Citrus clementina HOM05D002165 ORTHO05D001531 1.4e-08 62.8 73 46.6
Aqoxy5G02840 Aquilegia oxysepala HOM05D002165 ORTHO05D001531 1.8e-08 62.4 78 47.4
Eucgr.H01330 Eucalyptus grandis HOM05D002165 ORTHO05D001531 1.8e-08 62.4 74 48.6
Eucgr.H01327 Eucalyptus grandis HOM05D002165 ORTHO05D001531 2.4e-08 62.0 74 48.6
Eucgr.H01329 Eucalyptus grandis HOM05D002165 ORTHO05D001531 2.4e-08 62.0 74 48.6
Psat3g015160 Pisum sativum HOM05D008018 ORTHO05D001531 2.4e-08 62.0 73 53.4
THA.LOC104818754 Tarenaya hassleriana HOM05D002165 ORTHO05D001531 2.4e-08 62.0 74 52.7
Thecc.04G314700 Theobroma cacao HOM05D002165 ORTHO05D001531 2.4e-08 62.0 73 52.1
BcaC09g47857 Brassica carinata HOM05D002165 ORTHO05D001531 3.1e-08 61.6 77 51.9
BolC1t05659H Brassica oleracea HOM05D002165 ORTHO05D001531 3.1e-08 61.6 77 51.9
BraA01t04469Z Brassica rapa HOM05D002165 ORTHO05D001531 3.1e-08 61.6 77 51.9
CsaV3_6G002670 Cucumis sativus L. HOM05D002165 ORTHO05D001531 3.1e-08 61.6 77 48.1
Eucgr.H01325 Eucalyptus grandis HOM05D002165 ORTHO05D001531 3.1e-08 61.6 74 48.6
Eucgr.H01326 Eucalyptus grandis HOM05D002165 ORTHO05D001531 3.1e-08 61.6 74 48.6
Atru.chr12.1534 Acer truncatum HOM05D002165 ORTHO05D001531 4.1e-08 61.2 66 50.0
Atru.chr12.1536 Acer truncatum HOM05D002165 ORTHO05D001531 4.1e-08 61.2 66 50.0
BcaC05g30083 Brassica carinata HOM05D002165 ORTHO05D001531 4.1e-08 61.2 70 50.0
C05p61420 Brassica napus HOM05D002165 ORTHO05D001531 4.1e-08 61.2 70 50.0
BolC5t34800H Brassica oleracea HOM05D002165 ORTHO05D001531 4.1e-08 61.2 70 50.0
Eucgr.H01328 Eucalyptus grandis HOM05D002165 ORTHO05D001531 4.1e-08 61.2 74 47.3
TAR362G0276 Trochodendron aralioides HOM05D002165 ORTHO05D001531 4.1e-08 61.2 75 46.7
BcaC05g29776 Brassica carinata HOM05D002165 ORTHO05D001531 5.3e-08 60.8 70 50.0
A05p42200 Brassica napus HOM05D002165 ORTHO05D001531 5.3e-08 60.8 74 48.6
BraA05t22939Z Brassica rapa HOM05D002165 ORTHO05D001531 5.3e-08 60.8 74 48.6
DCAR_002558 Daucus carota HOM05D002165 ORTHO05D001531 5.3e-08 60.8 78 46.2
Cfa015751 Carpinus fangiana HOM05D002165 ORTHO05D001531 7.0e-08 60.5 76 50.0
DCAR_023419 Daucus carota HOM05D002165 ORTHO05D001531 7.0e-08 60.5 70 50.0
Sc16g0009410 Simmondsia chinensis HOM05D002165 ORTHO05D001531 7.0e-08 60.5 39 66.7
COL.COLO4_36933 Corchorus olitorius HOM05D002165 ORTHO05D001531 9.1e-08 60.1 73 50.7
Duzib128G1662 Durio zibethinus HOM05D002165 ORTHO05D001531 1.2e-07 59.7 81 48.1
A01p30200 Brassica napus HOM05D002165 ORTHO05D001531 1.6e-07 59.3 82 47.6
ClCG00G002170 Citrullus lanatus HOM05D002165 ORTHO05D001531 1.6e-07 59.3 77 46.8
ClCG08G002310 Citrullus lanatus HOM05D002165 ORTHO05D001531 1.6e-07 59.3 77 46.8
ClCG08G002360 Citrullus lanatus HOM05D002165 ORTHO05D001531 1.6e-07 59.3 77 46.8
DCAR_026927 Daucus carota HOM05D002165 ORTHO05D001531 2.0e-07 58.9 68 42.6
Eucgr.H01331 Eucalyptus grandis HOM05D002165 ORTHO05D001531 2.0e-07 58.9 77 45.5
Sed0011742 Sechium edule HOM05D002165 ORTHO05D001531 2.0e-07 58.9 56 46.4
Ciclev10013220m.g Citrus clementina HOM05D002165 ORTHO05D001531 2.7e-07 58.5 74 44.6
Psat6g154080 Pisum sativum HOM05D008018 ORTHO05D001531 2.7e-07 58.5 73 49.3
Eucgr.H01321 Eucalyptus grandis HOM05D002165 ORTHO05D001531 3.5e-07 58.2 77 46.8
BcaB06g25836 Brassica carinata HOM05D002165 ORTHO05D001531 4.5e-07 57.8 71 47.9
Psat6g157040 Pisum sativum HOM05D008018 ORTHO05D001531 5.9e-07 57.4 75 49.3
AUR62006822 Chenopodium quinoa HOM05D002165 ORTHO05D001531 7.7e-07 57.0 41 61.0
Ca_10206_v3 Cicer arietinum L. HOM05D008018 ORTHO05D001531 7.7e-07 57.0 75 46.7
MELO3C025017.2 Cucumis melo HOM05D002165 ORTHO05D001531 7.7e-07 57.0 77 45.5
Thhalv10022047m.g Eutrema salsugineum HOM05D002165 ORTHO05D001531 7.7e-07 57.0 73 43.8
Carub.0003s1728 Capsella rubella HOM05D002165 ORTHO05D001531 1.0e-06 56.6 71 45.1
AUR62000479 Chenopodium quinoa HOM05D002165 ORTHO05D001531 1.0e-06 56.6 50 54.0
CsaV3_6G002630 Cucumis sativus L. HOM05D002165 ORTHO05D001531 1.0e-06 56.6 79 48.1
MBI19_g04832_MAGBIO Magnolia biondii HOM05D002165 ORTHO05D001531 1.0e-06 56.6 37 67.6
PGR083G0845 Punica granatum HOM05D002165 ORTHO05D001531 1.0e-06 56.6 49 57.1
EL10Ac4g09564 Beta vulgaris HOM05D002165 ORTHO05D001531 1.3e-06 56.2 34 70.6
Ciclev10013222m.g Citrus clementina HOM05D002165 ORTHO05D001531 1.3e-06 56.2 74 43.2
Eucgr.H01334 Eucalyptus grandis HOM05D002165 ORTHO05D001531 1.3e-06 56.2 73 43.8
Sed0027158 Sechium edule HOM05D002165 ORTHO05D001531 1.3e-06 56.2 59 52.5
AL3G30640 Arabidopsis lyrata HOM05D002165 ORTHO05D001531 1.7e-06 55.8 71 43.7
Aqoxy2G02476 Aquilegia oxysepala HOM05D002165 ORTHO05D001531 2.2e-06 55.5 68 48.5
CARHR092880 Cardamine hirsuta HOM05D002165 ORTHO05D001531 2.2e-06 55.5 71 43.7
FAN02G1676 Fragaria x ananassa HOM05D002165 ORTHO05D001531 2.2e-06 55.5 73 43.8
FAN05G4164 Fragaria x ananassa HOM05D002165 ORTHO05D001531 2.2e-06 55.5 73 43.8
FAN09G0584 Fragaria x ananassa HOM05D002165 ORTHO05D001531 2.2e-06 55.5 73 43.8
Aa31LG8G4440 Aethionema arabicum HOM05D002165 ORTHO05D001531 2.9e-06 55.1 74 41.9
BcaC01g03752 Brassica carinata HOM05D002165 ORTHO05D001531 2.9e-06 55.1 77 42.9
BolC3t17173H Brassica oleracea HOM05D002165 ORTHO05D001531 2.9e-06 55.1 77 42.9
TPR.G2624 Trifolium pratense HOM05D008018 ORTHO05D001531 2.9e-06 55.1 80 48.8
arahy.Tifrunner.gnm1.ann1.RMBA11 Arachis hypogaea HOM05D008018 ORTHO05D001531 3.8e-06 54.7 72 50.0
BcaC05g28774 Brassica carinata HOM05D002165 ORTHO05D001531 3.8e-06 54.7 71 45.1
A03p40240 Brassica napus HOM05D002165 ORTHO05D001531 3.8e-06 54.7 70 45.7
C03p48940 Brassica napus HOM05D002165 ORTHO05D001531 3.8e-06 54.7 70 45.7
C05p48810 Brassica napus HOM05D002165 ORTHO05D001531 3.8e-06 54.7 71 45.1
BolC5t33619H Brassica oleracea HOM05D002165 ORTHO05D001531 3.8e-06 54.7 71 45.1
Eucgr.H01333 Eucalyptus grandis HOM05D002165 ORTHO05D001531 6.5e-06 53.9 73 42.5
arahy.Tifrunner.gnm1.ann1.1WI4WZ Arachis hypogaea HOM05D008018 ORTHO05D001531 8.5e-06 53.5 72 48.6
MELO3C025018.2 Cucumis melo HOM05D002165 ORTHO05D001531 8.5e-06 53.5 41 61.0
MELO3C025021.2 Cucumis melo HOM05D002165 ORTHO05D001531 8.5e-06 53.5 59 50.8
CsaV3_6G002620 Cucumis sativus L. HOM05D002165 ORTHO05D001531 8.5e-06 53.5 41 61.0


User provided reference genes

Program Settings