Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.15G185500 Glycine max HOM05D004032 ORTHO05D004462 4.8e-94 347.8 176 100.0
Glyma.01G192400 Glycine max HOM05D004032 ORTHO05D004462 2.0e-79 299.3 216 76.4
Glyma.11G049700 Glycine max HOM05D004032 ORTHO05D004462 2.9e-67 258.8 214 67.3
VMungo1215G3265 Vigna mungo HOM05D004032 ORTHO05D004462 8.0e-49 197.6 162 67.9
Phvul.003G236700 Phaseolus vulgaris HOM05D004032 ORTHO05D004462 8.9e-48 194.1 210 54.3
VMungo0251G2494 Vigna mungo HOM05D004032 ORTHO05D004462 2.0e-47 193.0 210 54.3
Lj4g0009335 Lotus japonicus HOM05D004032 ORTHO05D004462 4.9e-46 188.3 195 55.4
Glyma.17G163400 Glycine max HOM05D004032 ORTHO05D004462 1.1e-45 187.2 211 54.5
Glyma.05G103900 Glycine max HOM05D004032 ORTHO05D004462 3.2e-45 185.7 210 52.4
Phvul.002G012400 Phaseolus vulgaris HOM05D004032 ORTHO05D004462 2.7e-44 182.6 164 63.4
Lj2g0017817 Lotus japonicus HOM05D004032 ORTHO05D004462 7.8e-44 181.0 198 52.0
TPR.G23878 Trifolium pratense HOM05D004032 ORTHO05D004462 7.8e-44 181.0 199 51.8
Medtr4g095440 Medicago truncatula HOM05D004032 ORTHO05D004462 3.0e-43 179.1 201 52.7
Haze_15306 Corylus avellana HOM05D004032 ORTHO05D004462 1.1e-40 170.6 214 48.1
QL06p039858 Quercus lobata HOM05D004032 ORTHO05D004462 1.1e-40 170.6 215 48.8
Lalb_Chr05g0213571 Lupinus albus HOM05D004032 ORTHO05D004462 3.1e-40 169.1 212 47.2
Psat4g083520 Pisum sativum HOM05D004032 ORTHO05D004462 3.4e-39 165.6 200 47.5
Dinv30069 Davidia involucrata HOM05D004032 ORTHO05D004462 3.9e-35 152.1 197 47.7
Potri.007G053300 Populus trichocarpa HOM05D004032 ORTHO05D004462 6.6e-35 151.4 214 44.9
GSVIVG01000145001 Vitis vinifera HOM05D004032 ORTHO05D004462 1.5e-34 150.2 209 43.1
Manes.13G113400 Manihot esculenta HOM05D004032 ORTHO05D004462 7.3e-34 147.9 211 45.0
Thecc.01G069300 Theobroma cacao HOM05D004032 ORTHO05D004462 7.3e-34 147.9 205 46.8
CiPaw.02G004200 Carya illinoinensis HOM05D004032 ORTHO05D004462 9.5e-34 147.5 220 43.2
TWI09G0556 Tripterygium wilfordii HOM05D004032 ORTHO05D004462 2.1e-33 146.4 182 49.5
Duzib147G1493 Durio zibethinus HOM05D004032 ORTHO05D004462 1.1e-32 144.1 211 44.5
Potri.005G145800 Populus trichocarpa HOM05D004032 ORTHO05D004462 1.8e-32 143.3 214 42.1
Manes.12G111200 Manihot esculenta HOM05D004032 ORTHO05D004462 5.2e-32 141.7 219 44.3
Duzib187G1312 Durio zibethinus HOM05D004032 ORTHO05D004462 7.6e-31 137.9 207 44.4
Lalb_Chr16g0389141 Lupinus albus HOM05D004032 ORTHO05D004462 1.7e-30 136.7 192 45.8
Prupe.6G223500 Prunus persica HOM05D004032 ORTHO05D004462 6.4e-30 134.8 221 41.2
Sabra05G0116500 Salix brachista HOM05D004032 ORTHO05D004462 6.4e-30 134.8 208 40.9
Ciclev10026503m.g Citrus clementina HOM05D004032 ORTHO05D004462 8.4e-30 134.4 210 41.4
FvH4_1g17290 Fragaria vesca HOM05D004032 ORTHO05D004462 1.1e-29 134.0 179 48.0
FAN19G2997 Fragaria x ananassa HOM05D004032 ORTHO05D004462 1.1e-29 134.0 179 48.0
CiPaw.01G006700 Carya illinoinensis HOM05D004032 ORTHO05D004462 2.4e-29 132.9 220 41.4
TAR376G0432 Trochodendron aralioides HOM05D004032 ORTHO05D004462 2.4e-29 132.9 201 42.8
TWI53G0135 Tripterygium wilfordii HOM05D004032 ORTHO05D004462 9.2e-29 131.0 182 46.2
FAN28G1831 Fragaria x ananassa HOM05D004032 ORTHO05D004462 1.2e-28 130.6 189 45.5
Cpa.g.sc6.44 Carica papaya HOM05D004032 ORTHO05D004462 2.1e-28 129.8 205 43.4
Gohir.D11G206500 Gossypium hirsutum HOM05D004032 ORTHO05D004462 3.5e-28 129.0 215 42.3
Lalb_Chr09g0334051 Lupinus albus HOM05D004032 ORTHO05D004462 3.5e-28 129.0 193 45.6
Gorai.007G221700 Gossypium raimondii HOM05D004032 ORTHO05D004462 4.6e-28 128.6 215 42.3
RcHm_v2.0_Chr2g0107481 Rosa chinensis HOM05D004032 ORTHO05D004462 1.3e-27 127.1 191 44.5
arahy.Tifrunner.gnm1.ann1.L7L2H1 Arachis hypogaea HOM05D004032 ORTHO05D004462 3.9e-27 125.6 192 45.8
Gohir.A11G216800 Gossypium hirsutum HOM05D004032 ORTHO05D004462 3.9e-27 125.6 215 41.4
arahy.Tifrunner.gnm1.ann1.7C4JLW Arachis hypogaea HOM05D004032 ORTHO05D004462 1.5e-26 123.6 192 45.3
CSS0002661 Camellia sinensis var. sinensis HOM05D004032 ORTHO05D004462 2.1e-25 119.8 210 38.1
DCAR_025783 Daucus carota HOM05D004032 ORTHO05D004462 2.8e-25 119.4 218 38.1
Dinv26906 Davidia involucrata HOM05D004032 ORTHO05D004462 3.6e-25 119.0 208 39.4
CSS0031607 Camellia sinensis var. sinensis HOM05D004032 ORTHO05D004462 8.1e-25 117.9 210 37.6
HanXRQChr12g0373191 Helianthus annuus HOM05D004032 ORTHO05D004462 1.8e-24 116.7 188 42.6
HanXRQChr11g0322451 Helianthus annuus HOM05D004032 ORTHO05D004462 4.0e-24 115.5 188 41.5
COL.COLO4_11544 Corchorus olitorius HOM05D004032 ORTHO05D004462 5.2e-24 115.2 178 43.3
Hma1.2p1_0942F.1_g239820 Hydrangea macrophylla HOM05D004032 ORTHO05D004462 5.2e-24 115.2 216 38.4
Rhsim10G0102400 Rhododendron simsii HOM05D004032 ORTHO05D004462 5.2e-24 115.2 196 39.3
vmacro05391 Vaccinium macrocarpon HOM05D004032 ORTHO05D004462 6.9e-24 114.8 193 41.5
PGR004G0357 Punica granatum HOM05D004032 ORTHO05D004462 9.0e-24 114.4 195 41.5
MD15G1293900 Malus domestica HOM05D004032 ORTHO05D004462 1.2e-23 114.0 235 37.9
Eucgr.I00716 Eucalyptus grandis HOM05D004032 ORTHO05D004462 1.5e-23 113.6 217 38.7
TWI73G0275 Tripterygium wilfordii HOM05D004032 ORTHO05D004462 2.0e-23 113.2 175 44.6
TAR628G1371 Trochodendron aralioides HOM05D004032 ORTHO05D004462 2.6e-23 112.8 192 40.6
MD02G1182600 Malus domestica HOM05D004032 ORTHO05D004462 5.8e-23 111.7 232 38.8
Gohir.D03G027200 Gossypium hirsutum HOM05D004032 ORTHO05D004462 9.9e-23 110.9 200 40.0
DCAR_010831 Daucus carota HOM05D004032 ORTHO05D004462 1.3e-22 110.5 202 40.1
FAN23G1545 Fragaria x ananassa HOM05D004032 ORTHO05D004462 1.3e-22 110.5 189 40.7
Lsat_1_v5_gn_4_162340 Lactuca sativa HOM05D004032 ORTHO05D004462 1.3e-22 110.5 188 41.0
FAN26G2221 Fragaria x ananassa HOM05D004032 ORTHO05D004462 1.7e-22 110.2 189 40.2
Oeu013283.1 Olea europaea HOM05D004032 ORTHO05D004462 1.7e-22 110.2 203 38.9
Cc07_g06860 Coffea canephora HOM05D004032 ORTHO05D004462 6.4e-22 108.2 222 36.0
Gorai.003G028900 Gossypium raimondii HOM05D004032 ORTHO05D004462 6.4e-22 108.2 200 39.5
Actinidia16438 Actinidia chinensis HOM05D004032 ORTHO05D004462 8.4e-22 107.8 188 38.8
MSTRG.23688 Avicennia marina HOM05D004032 ORTHO05D004462 1.1e-21 107.5 191 40.3
Aqoxy6G02719 Aquilegia oxysepala HOM05D004032 ORTHO05D004462 1.4e-21 107.1 213 34.3
Gohir.A02G153200 Gossypium hirsutum HOM05D004032 ORTHO05D004462 2.4e-21 106.3 201 38.3
arahy.Tifrunner.gnm1.ann1.4VG7J5 Arachis hypogaea HOM05D004032 ORTHO05D004462 4.2e-21 105.5 229 35.4
Oeu054187.1 Olea europaea HOM05D004032 ORTHO05D004462 4.2e-21 105.5 201 37.8
MSTRG.2833 Avicennia marina HOM05D004032 ORTHO05D004462 1.0e-19 100.9 190 38.9
Oeu031172.1 Olea europaea HOM05D004032 ORTHO05D004462 1.0e-19 100.9 205 37.1
Oeu031171.1 Olea europaea HOM05D004032 ORTHO05D004462 1.3e-19 100.5 205 37.1
CsaV3_6G043920 Cucumis sativus L. HOM05D004032 ORTHO05D004462 1.7e-19 100.1 206 37.9
Nn5g30527 Nelumbo nucifera HOM05D004032 ORTHO05D004462 3.0e-19 99.4 130 43.1
PSO541G5875 Papaver somniferum HOM05D004032 ORTHO05D004462 3.0e-19 99.4 201 36.8
ECA232G3054 Erigeron canadensis HOM05D004032 ORTHO05D004462 3.9e-19 99.0 187 38.0
Actinidia21232 Actinidia chinensis HOM05D004032 ORTHO05D004462 8.7e-19 97.8 133 43.6
ClCG01G017390 Citrullus lanatus HOM05D004032 ORTHO05D004462 8.7e-19 97.8 201 34.3
Nitab4.5_0000868g0010 Nicotiana tabacum HOM05D004032 ORTHO05D004462 1.9e-18 96.7 207 37.2
CAN.G1075.18 Capsicum annuum HOM05D004032 ORTHO05D004462 2.5e-18 96.3 215 36.3
Actinidia36441 Actinidia chinensis HOM05D004032 ORTHO05D004462 3.3e-18 95.9 189 36.0
Hma1.2p1_0017F.1_g012150 Hydrangea macrophylla HOM05D004032 ORTHO05D004462 3.3e-18 95.9 201 37.3
Actinidia11994 Actinidia chinensis HOM05D004032 ORTHO05D004462 7.3e-18 94.7 137 46.7
Gohir.A10G090100 Gossypium hirsutum HOM05D004032 ORTHO05D004462 1.3e-17 94.0 178 36.0
SGA_v2.0_scaffold15G07422 Striga asiatica HOM05D004032 ORTHO05D004462 1.3e-17 94.0 181 37.0
Nn1g04611 Nelumbo nucifera HOM05D004032 ORTHO05D004462 1.6e-17 93.6 193 36.3
PSO675G6353 Papaver somniferum HOM05D004032 ORTHO05D004462 1.6e-17 93.6 201 35.3
Gohir.D10G098000 Gossypium hirsutum HOM05D004032 ORTHO05D004462 2.1e-17 93.2 179 37.4
Lj7A88G34 Lonicera japonica HOM05D004032 ORTHO05D004462 2.1e-17 93.2 150 40.7
vmacro17992 Vaccinium macrocarpon HOM05D004032 ORTHO05D004462 2.1e-17 93.2 174 36.8
Sed0016234 Sechium edule HOM05D004032 ORTHO05D004462 3.6e-17 92.4 168 36.3
CSS0022714 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D004462 4.8e-17 92.0 186 37.1
BcaB02g09927 Brassica carinata HOM05D004032 ORTHO05D004462 6.2e-17 91.7 115 44.3
C07p24210 Brassica napus HOM05D004032 ORTHO05D004462 1.4e-16 90.5 116 45.7
BolC7t42948H Brassica oleracea HOM05D004032 ORTHO05D004462 1.4e-16 90.5 116 45.7
A07p16510 Brassica napus HOM05D004032 ORTHO05D004462 3.1e-16 89.4 99 49.5
BraA07t29375Z Brassica rapa HOM05D004032 ORTHO05D004462 3.1e-16 89.4 99 49.5
Peaxi162Scf00264g00213 Petunia axillaris HOM05D004032 ORTHO05D004462 3.1e-16 89.4 228 35.1
Migut.H00365 Erythranthe guttata HOM05D004032 ORTHO05D004462 5.3e-16 88.6 198 34.3
Thhalv10005011m.g Eutrema salsugineum HOM05D004032 ORTHO05D004462 5.3e-16 88.6 118 39.8
Gorai.011G107600 Gossypium raimondii HOM05D004032 ORTHO05D004462 5.3e-16 88.6 173 36.4
Rhsim08G0095200 Rhododendron simsii HOM05D004032 ORTHO05D004462 6.9e-16 88.2 172 34.9
Lj4A160G62 Lonicera japonica HOM05D004032 ORTHO05D004462 9.0e-16 87.8 121 45.5
Sed0022630 Sechium edule HOM05D004032 ORTHO05D004462 1.2e-15 87.4 196 35.7
CSS0026387 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D004462 1.5e-15 87.0 193 35.2
BcaC06g34822 Brassica carinata HOM05D004032 ORTHO05D004462 2.0e-15 86.7 99 48.5
Sp2g29270 Schrenkiella parvula HOM05D004032 ORTHO05D004462 2.0e-15 86.7 102 42.2
Aa31LG1G15950 Aethionema arabicum HOM05D004032 ORTHO05D004462 7.6e-15 84.7 108 47.2
CARHR280210 Cardamine hirsuta HOM05D004032 ORTHO05D004462 1.3e-14 84.0 102 44.1
Oeu040591.1 Olea europaea HOM05D004032 ORTHO05D004462 1.7e-14 83.6 155 37.4
Oeu040592.1 Olea europaea HOM05D004032 ORTHO05D004462 1.7e-14 83.6 155 37.4
BcaC03g18375 Brassica carinata HOM05D004032 ORTHO05D004462 3.8e-14 82.4 102 40.2
C02p64510 Brassica napus HOM05D004032 ORTHO05D004462 3.8e-14 82.4 102 40.2
BolC2t12515H Brassica oleracea HOM05D004032 ORTHO05D004462 3.8e-14 82.4 102 40.2
Sed0024584 Sechium edule HOM05D004032 ORTHO05D004462 3.8e-14 82.4 165 35.8
PGSC0003DMG400024938 Solanum tuberosum HOM05D004032 ORTHO05D004462 3.8e-14 82.4 213 33.8
Hund13934 Selenicereus undatus HOM05D004032 ORTHO05D004462 4.9e-14 82.0 212 29.2
ECA238G1032 Erigeron canadensis HOM05D004032 ORTHO05D004462 8.4e-14 81.3 144 39.6
THA.LOC104819252 Tarenaya hassleriana HOM05D004032 ORTHO05D004462 8.4e-14 81.3 141 43.3
THA.LOC104827558 Tarenaya hassleriana HOM05D004032 ORTHO05D004462 8.4e-14 81.3 110 43.6
AL8G43930 Arabidopsis lyrata HOM05D004032 ORTHO05D004462 1.1e-13 80.9 106 41.5
AT5G67390 Arabidopsis thaliana HOM05D004032 ORTHO05D004462 1.1e-13 80.9 106 41.5
A02p44240 Brassica napus HOM05D004032 ORTHO05D004462 1.1e-13 80.9 136 36.8
BraA02t09348Z Brassica rapa HOM05D004032 ORTHO05D004462 1.1e-13 80.9 136 36.8
Solyc02g092590.3 Solanum lycopersicum HOM05D004032 ORTHO05D004462 1.1e-13 80.9 211 32.7
A09p09370 Brassica napus HOM05D004032 ORTHO05D004462 1.4e-13 80.5 136 42.6
Sopen02g037160 Solanum pennellii HOM05D004032 ORTHO05D004462 1.9e-13 80.1 215 31.6
C09p10940 Brassica napus HOM05D004032 ORTHO05D004462 7.1e-13 78.2 140 38.6
BraA09t36588Z Brassica rapa HOM05D004032 ORTHO05D004462 7.1e-13 78.2 136 42.6
Carub.0008s2709 Capsella rubella HOM05D004032 ORTHO05D004462 9.3e-13 77.8 104 43.3
Lsat_1_v5_gn_2_83781 Lactuca sativa HOM05D004032 ORTHO05D004462 9.3e-13 77.8 187 32.6
HPP92_023674 Vanilla planifolia HOM05D004032 ORTHO05D004462 9.3e-13 77.8 200 29.5
arahy.Tifrunner.gnm1.ann1.NPYP4Z Arachis hypogaea HOM05D004032 ORTHO05D004462 1.6e-12 77.0 145 35.9
BcaC04g23221 Brassica carinata HOM05D004032 ORTHO05D004462 2.1e-12 76.6 140 37.9
BolC9t53989H Brassica oleracea HOM05D004032 ORTHO05D004462 2.1e-12 76.6 140 37.9
Ah.02g125580 Amaranthus hybridus HOM05D004032 ORTHO05D004462 2.7e-12 76.3 196 33.2
SalBow6G2131 Salvia bowleyana HOM05D004032 ORTHO05D004462 2.7e-12 76.3 178 32.0
Hund16386 Selenicereus undatus HOM05D004032 ORTHO05D004462 2.7e-12 76.3 189 32.3
HPP92_023691 Vanilla planifolia HOM05D004032 ORTHO05D004462 4.6e-12 75.5 200 29.5
HanXRQChr14g0441881 Helianthus annuus HOM05D004032 ORTHO05D004462 7.9e-12 74.7 141 36.9
THA.LOC104821233 Tarenaya hassleriana HOM05D004032 ORTHO05D004462 1.0e-11 74.3 121 42.1
Atru.chr3.192 Acer truncatum HOM05D004032 ORTHO05D004462 1.8e-11 73.6 98 42.9
Atru.chr3.163 Acer truncatum HOM05D004032 ORTHO05D004462 3.0e-11 72.8 100 42.0
BcaB04g20056 Brassica carinata HOM05D004032 ORTHO05D004462 3.0e-11 72.8 135 38.5
SGA_v2.0_scaffold72G24091 Striga asiatica HOM05D004032 ORTHO05D004462 1.9e-10 70.1 126 38.1
Lsat_1_v5_gn_5_85601 Lactuca sativa HOM05D007665 ORTHO05D008293 5.6e-10 68.6 178 33.1
Nitab4.5_0006689g0040 Nicotiana tabacum HOM05D004032 ORTHO05D004462 9.6e-10 67.8 61 50.8
CANSAT01G2482 Cannabis sativa HOM05D004032 ORTHO05D004462 1.3e-09 67.4 228 31.1
Os03g0604566 Oryza sativa ssp. japonica HOM05D004032 ORTHO05D004462 1.6e-09 67.0 86 41.9
Os03g0442900 Oryza sativa ssp. japonica HOM05D004032 ORTHO05D004462 4.8e-09 65.5 193 31.6
Os12g0580600 Oryza sativa ssp. japonica HOM05D004032 ORTHO05D004462 8.1e-09 64.7 101 37.6
Zm00001eb134870 Zea mays HOM05D004032 ORTHO05D004462 4.0e-08 62.4 98 41.8
CDE02G2979 Ceratophyllum demersum HOM05D000039 ORTHO05D000870 6.9e-08 61.6 158 35.4
Zm00001eb058240 Zea mays HOM05D004032 ORTHO05D004462 1.2e-07 60.8 54 46.3
Thecc.09G178300 Theobroma cacao HOM05D007665 ORTHO05D008293 2.0e-07 60.1 219 31.5
ATR0030G044 Amborella trichopoda HOM05D004032 ORTHO05D004462 5.8e-07 58.5 229 28.4
HPP92_007856 Vanilla planifolia HOM05D004032 ORTHO05D004462 5.8e-07 58.5 126 35.7
MELO3C020862.2 Cucumis melo HOM05D004032 ORTHO05D004462 1.3e-06 57.4 90 38.9
ClCG02G012390 Citrullus lanatus HOM05D004032 ORTHO05D004462 2.2e-06 56.6 90 38.9
CsaV3_2G016520 Cucumis sativus L. HOM05D004032 ORTHO05D004462 2.9e-06 56.2 90 37.8
Zm00001eb214280 Zea mays HOM05D004032 ORTHO05D004462 2.9e-06 56.2 45 51.1
Sc16g0000080 Simmondsia chinensis HOM05D004032 ORTHO05D004462 3.8e-06 55.8 163 28.2
MSTRG.6233 Avicennia marina HOM05D007665 ORTHO05D008293 4.9e-06 55.5 207 28.0
EL10Ac6g15646 Beta vulgaris HOM05D004032 ORTHO05D004462 4.9e-06 55.5 130 30.0


User provided reference genes

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