Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.15G178100 Glycine max HOM05D003803 ORTHO05D004456 6.7e-114 414.1 216 100.0
Glyma.09G070100 Glycine max HOM05D003803 ORTHO05D004456 7.2e-92 340.9 219 84.9
Psat1g134600 Pisum sativum HOM05D003803 ORTHO05D004456 2.3e-58 229.6 212 61.3
Lj4g0012858 Lotus japonicus HOM05D003803 ORTHO05D004456 2.3e-50 203.0 200 63.0
Lalb_Chr07g0181211 Lupinus albus HOM05D003803 ORTHO05D004456 2.1e-46 189.9 222 55.4
MD02G1093600 Malus domestica HOM05D003803 ORTHO05D004456 1.1e-44 184.1 226 52.7
Potri.018G062400 Populus trichocarpa HOM05D003803 ORTHO05D004456 1.5e-44 183.7 206 56.8
Lalb_Chr13g0299401 Lupinus albus HOM05D003803 ORTHO05D004456 4.3e-44 182.2 187 60.4
MD15G1218900 Malus domestica HOM05D003803 ORTHO05D004456 1.8e-42 176.8 207 51.7
Thecc.09G075700 Theobroma cacao HOM05D003803 ORTHO05D004456 6.9e-42 174.9 111 72.1
Glyma.17G048600 Glycine max HOM05D003803 ORTHO05D004456 1.5e-41 173.7 200 52.5
Gorai.001G015700 Gossypium raimondii HOM05D003803 ORTHO05D004456 3.4e-41 172.6 219 51.6
Duzib168G2099 Durio zibethinus HOM05D003803 ORTHO05D004456 7.6e-41 171.4 111 71.2
Lj6g0024210 Lotus japonicus HOM05D003803 ORTHO05D004456 7.6e-41 171.4 163 68.7
FvH4_1g08850 Fragaria vesca HOM05D003803 ORTHO05D004456 2.2e-40 169.9 255 45.9
Prupe.7G197000 Prunus persica HOM05D003803 ORTHO05D004456 6.4e-40 168.3 239 43.5
CiPaw.04G142500 Carya illinoinensis HOM05D003803 ORTHO05D004456 1.4e-39 167.2 116 66.4
Phvul.003G130200 Phaseolus vulgaris HOM05D003803 ORTHO05D004456 1.9e-39 166.8 249 44.2
TPR.G12599 Trifolium pratense HOM05D003803 ORTHO05D004456 2.4e-39 166.4 212 51.9
Manes.16G094800 Manihot esculenta HOM05D003803 ORTHO05D004456 3.2e-39 166.0 125 64.0
Gohir.A13G190300 Gossypium hirsutum HOM05D003803 ORTHO05D004456 5.4e-39 165.2 122 68.0
Gohir.D13G196350 Gossypium hirsutum HOM05D003803 ORTHO05D004456 5.4e-39 165.2 122 68.0
Manes.03G041000 Manihot esculenta HOM05D003803 ORTHO05D004456 7.1e-39 164.9 112 65.2
Dinv42400 Davidia involucrata HOM05D003803 ORTHO05D004456 9.3e-39 164.5 112 67.0
Gohir.A07G015200 Gossypium hirsutum HOM05D003803 ORTHO05D004456 1.6e-38 163.7 205 48.3
Gorai.013G223800 Gossypium raimondii HOM05D003803 ORTHO05D004456 4.6e-38 162.2 128 64.8
CANSAT56G4286 Cannabis sativa HOM05D003803 ORTHO05D004456 6.0e-38 161.8 129 62.0
Potri.006G141100 Populus trichocarpa HOM05D003803 ORTHO05D004456 6.0e-38 161.8 225 49.8
TWI63G1012 Tripterygium wilfordii HOM05D003803 ORTHO05D004456 1.7e-37 160.2 105 69.5
RcHm_v2.0_Chr2g0095321 Rosa chinensis HOM05D003803 ORTHO05D004456 8.7e-37 157.9 115 67.8
Duzib150G1133 Durio zibethinus HOM05D003803 ORTHO05D004456 1.1e-36 157.5 112 67.9
Medtr2g042200 Medicago truncatula HOM05D003803 ORTHO05D004456 1.5e-36 157.1 99 77.8
TWI34G0129 Tripterygium wilfordii HOM05D003803 ORTHO05D004456 1.5e-36 157.1 129 62.8
CiPaw.03G205300 Carya illinoinensis HOM05D003803 ORTHO05D004456 4.3e-36 155.6 107 67.3
ClCG03G015020 Citrullus lanatus HOM05D003803 ORTHO05D004456 5.6e-36 155.2 102 68.6
Glyma.13G110900 Glycine max HOM05D003803 ORTHO05D004456 5.6e-36 155.2 165 60.6
Psat4g018440 Pisum sativum HOM05D003803 ORTHO05D004456 2.1e-35 153.3 84 81.0
CsaV3_2G001120 Cucumis sativus L. HOM05D003803 ORTHO05D004456 3.6e-35 152.5 228 43.0
Duzib187G1358 Durio zibethinus HOM05D003803 ORTHO05D004456 4.8e-35 152.1 109 69.7
Ciclev10010564m.g Citrus clementina HOM05D003803 ORTHO05D004456 6.2e-35 151.8 125 60.0
TAR624G1266 Trochodendron aralioides HOM05D003803 ORTHO05D004456 8.1e-35 151.4 197 44.7
TPR.G8075 Trifolium pratense HOM05D003803 ORTHO05D004456 1.1e-34 151.0 99 77.8
CAN.G595.3 Capsicum annuum HOM05D003803 ORTHO05D004456 1.4e-34 150.6 213 47.4
MELO3C015527.2 Cucumis melo HOM05D003803 ORTHO05D004456 1.4e-34 150.6 214 47.7
Nn8g38618 Nelumbo nucifera HOM05D003803 ORTHO05D004456 1.8e-34 150.2 129 59.7
Migut.L01571 Erythranthe guttata HOM05D003803 ORTHO05D004456 2.4e-34 149.8 172 52.3
Gohir.D07G014900 Gossypium hirsutum HOM05D003803 ORTHO05D004456 3.1e-34 149.4 219 46.1
Solyc07g041980.3 Solanum lycopersicum HOM05D003803 ORTHO05D004456 4.0e-34 149.1 122 60.7
QL11p000998 Quercus lobata HOM05D003803 ORTHO05D004456 1.2e-33 147.5 91 72.5
VMungo1215G1786 Vigna mungo HOM05D003803 ORTHO05D004456 1.5e-33 147.1 103 69.9
Oeu007415.1 Olea europaea HOM05D003803 ORTHO05D004456 2.0e-33 146.7 213 46.5
SalBow5G3024 Salvia bowleyana HOM05D003803 ORTHO05D004456 5.8e-33 145.2 198 48.0
SalBow5G4531 Salvia bowleyana HOM05D003803 ORTHO05D004456 5.8e-33 145.2 198 48.0
Lalb_Chr11g0074261 Lupinus albus HOM05D003803 ORTHO05D004456 1.3e-32 144.1 211 48.8
Oeu000278.1 Olea europaea HOM05D003803 ORTHO05D004456 1.7e-32 143.7 170 52.4
A10p19380 Brassica napus HOM05D003803 ORTHO05D004456 2.2e-32 143.3 113 55.8
CARHR192170 Cardamine hirsuta HOM05D003803 ORTHO05D004456 3.8e-32 142.5 121 57.0
Sp6g23850 Schrenkiella parvula HOM05D003803 ORTHO05D004456 4.9e-32 142.1 123 54.5
Cc06_g12240 Coffea canephora HOM05D003803 ORTHO05D004456 1.9e-31 140.2 227 42.3
Sed0004681 Sechium edule HOM05D003803 ORTHO05D004456 1.9e-31 140.2 195 41.5
Gohir.D06G076000 Gossypium hirsutum HOM05D003803 ORTHO05D004456 2.4e-31 139.8 100 68.0
Eucgr.C03259 Eucalyptus grandis HOM05D003803 ORTHO05D004456 3.2e-31 139.4 165 48.5
MSTRG.26474 Avicennia marina HOM05D003803 ORTHO05D004456 7.1e-31 138.3 196 51.0
A02p06390 Brassica napus HOM05D003803 ORTHO05D004456 1.2e-30 137.5 122 52.5
BraA02t05584Z Brassica rapa HOM05D003803 ORTHO05D004456 1.2e-30 137.5 122 52.5
BolC2t07055H Brassica oleracea HOM05D003803 ORTHO05D004456 1.6e-30 137.1 122 52.5
BraA10t44015Z Brassica rapa HOM05D003803 ORTHO05D004456 4.6e-30 135.6 126 50.8
Hma1.2p1_0169F.1_g074460 Hydrangea macrophylla HOM05D003803 ORTHO05D004456 6.0e-30 135.2 206 48.5
FAN28G2731 Fragaria x ananassa HOM05D003803 ORTHO05D004456 7.9e-30 134.8 83 74.7
Gorai.010G088900 Gossypium raimondii HOM05D003803 ORTHO05D004456 7.9e-30 134.8 221 47.5
FAN26G0190 Fragaria x ananassa HOM05D003803 ORTHO05D004456 1.3e-29 134.0 84 73.8
Gohir.A06G077000 Gossypium hirsutum HOM05D003803 ORTHO05D004456 1.3e-29 134.0 217 48.8
Sabra06G0110200 Salix brachista HOM05D003803 ORTHO05D004456 2.3e-29 133.3 94 67.0
Carub.0006s1897 Capsella rubella HOM05D003803 ORTHO05D004456 3.0e-29 132.9 97 62.9
THA.LOC104799616 Tarenaya hassleriana HOM05D003803 ORTHO05D004456 3.0e-29 132.9 124 53.2
Actinidia30227 Actinidia chinensis HOM05D003803 ORTHO05D004456 3.9e-29 132.5 111 62.2
PSO421G0234 Papaver somniferum HOM05D003803 ORTHO05D004456 5.1e-29 132.1 223 45.7
C03p11700 Brassica napus HOM05D003803 ORTHO05D004456 6.7e-29 131.7 117 55.6
BolC3t13641H Brassica oleracea HOM05D003803 ORTHO05D004456 6.7e-29 131.7 117 55.6
GSVIVG01015067001 Vitis vinifera HOM05D003803 ORTHO05D004456 6.7e-29 131.7 102 63.7
Actinidia29937 Actinidia chinensis HOM05D003803 ORTHO05D004456 8.7e-29 131.3 141 49.6
Nitab4.5_0000343g0290 Nicotiana tabacum HOM05D003803 ORTHO05D004456 1.9e-28 130.2 101 63.4
PSO104G0196 Papaver somniferum HOM05D003803 ORTHO05D004456 2.5e-28 129.8 223 48.0
AT5G20635 Arabidopsis thaliana HOM05D003803 ORTHO05D004456 3.3e-28 129.4 110 56.4
C09p55600 Brassica napus HOM05D003803 ORTHO05D004456 3.3e-28 129.4 188 46.8
Nn6g35693 Nelumbo nucifera HOM05D003803 ORTHO05D004456 9.6e-28 127.9 210 40.0
PGR044G0570 Punica granatum HOM05D003803 ORTHO05D004456 1.6e-27 127.1 227 46.3
A03p10180 Brassica napus HOM05D003803 ORTHO05D004456 2.1e-27 126.7 123 50.4
BraA03t10328Z Brassica rapa HOM05D003803 ORTHO05D004456 2.1e-27 126.7 123 50.4
AL6G32180 Arabidopsis lyrata HOM05D003803 ORTHO05D004456 1.8e-26 123.6 197 48.7
THA.LOC104810996 Tarenaya hassleriana HOM05D003803 ORTHO05D004456 1.8e-26 123.6 240 40.8
Sopen07g021560 Solanum pennellii HOM05D003803 ORTHO05D004456 5.3e-26 122.1 94 64.9
Manes.11G018700 Manihot esculenta HOM05D003803 ORTHO05D004456 9.0e-26 121.3 197 40.6
Thhalv10014548m.g Eutrema salsugineum HOM05D003803 ORTHO05D004456 1.5e-25 120.6 123 51.2
BcaB01g04775 Brassica carinata HOM05D003803 ORTHO05D004456 2.0e-25 120.2 87 62.1
arahy.Tifrunner.gnm1.ann1.AJ3133 Arachis hypogaea HOM05D003803 ORTHO05D004456 5.8e-25 118.6 91 65.9
arahy.Tifrunner.gnm1.ann1.TX00RK Arachis hypogaea HOM05D003803 ORTHO05D004456 5.8e-25 118.6 91 65.9
Sc18g0002620 Simmondsia chinensis HOM05D003803 ORTHO05D004456 5.8e-25 118.6 210 41.9
BolC9t58422H Brassica oleracea HOM05D003803 ORTHO05D004456 1.3e-24 117.5 203 42.9
MSTRG.10505 Avicennia marina HOM05D003803 ORTHO05D004456 4.9e-24 115.5 169 46.2
Sed0026577 Sechium edule HOM05D003803 ORTHO05D004456 4.2e-23 112.5 90 63.3
Dinv25550 Davidia involucrata HOM05D003803 ORTHO05D004456 1.2e-22 110.9 69 78.3
DCAR_024755 Daucus carota HOM05D003803 ORTHO05D004456 2.1e-22 110.2 157 43.3
arahy.Tifrunner.gnm1.ann1.1Y26QK Arachis hypogaea HOM05D003803 ORTHO05D004456 2.7e-22 109.8 89 65.2
arahy.Tifrunner.gnm1.ann1.KPGD7J Arachis hypogaea HOM05D003803 ORTHO05D004456 2.7e-22 109.8 89 65.2
MELO3C004657.2 Cucumis melo HOM05D003803 ORTHO05D004456 6.0e-22 108.6 65 73.8
Peaxi162Scf00348g00817 Petunia axillaris HOM05D003803 ORTHO05D004456 3.0e-21 106.3 73 75.3
Actinidia39653 Actinidia chinensis HOM05D003803 ORTHO05D004456 4.3e-20 102.4 69 71.0
RcHm_v2.0_Chr6g0246401 Rosa chinensis HOM05D003803 ORTHO05D004456 4.3e-20 102.4 80 61.2
Cpa.g.sc28.25 Carica papaya HOM05D003803 ORTHO05D004456 5.6e-20 102.1 69 68.1
Ca_02184_v3 Cicer arietinum L. HOM05D003803 ORTHO05D004456 5.6e-20 102.1 70 75.7
Os08g0456600 Oryza sativa ssp. japonica HOM05D003803 ORTHO05D004456 3.7e-19 99.4 81 51.9
Zm00001eb314160 Zea mays HOM05D003803 ORTHO05D004456 4.8e-19 99.0 120 44.2
Zm00001eb100230 Zea mays HOM05D003803 ORTHO05D004456 8.1e-19 98.2 102 46.1
Sc15g0000470 Simmondsia chinensis HOM05D003803 ORTHO05D004456 1.4e-18 97.4 192 40.1
HanXRQChr10g0319741 Helianthus annuus HOM05D003803 ORTHO05D004456 3.1e-18 96.3 100 55.0
Aqoxy7G01029 Aquilegia oxysepala HOM05D003803 ORTHO05D004456 4.0e-18 95.9 71 64.8
BcaB08g36515 Brassica carinata HOM05D003803 ORTHO05D004456 4.0e-18 95.9 62 69.4
CDE05G2490 Ceratophyllum demersum HOM05D003803 ORTHO05D004456 5.3e-18 95.5 114 45.6
FAN23G2205 Fragaria x ananassa HOM05D003803 ORTHO05D004456 6.9e-18 95.1 58 79.3
Hma1.2p1_0179F.1_g079480 Hydrangea macrophylla HOM05D003803 ORTHO05D004456 1.2e-17 94.4 174 39.7
ATR0598G175 Amborella trichopoda HOM05D003803 ORTHO05D004456 1.5e-17 94.0 90 51.1
Os09g0441900 Oryza sativa ssp. japonica HOM05D003803 ORTHO05D004456 4.9e-16 89.0 94 45.7
HPP92_004363 Vanilla planifolia HOM05D003803 ORTHO05D004456 4.9e-16 89.0 255 31.8
HPP92_016238 Vanilla planifolia HOM05D003803 ORTHO05D004456 4.9e-16 89.0 82 52.4
Hund26046 Selenicereus undatus HOM05D003803 ORTHO05D004456 1.4e-15 87.4 58 75.9
FAN19G2912 Fragaria x ananassa HOM05D003803 ORTHO05D004456 1.9e-15 87.0 54 77.8
ClCG11G001400 Citrullus lanatus HOM05D003803 ORTHO05D004456 7.1e-15 85.1 135 41.5
Medtr8g021170 Medicago truncatula HOM05D003803 ORTHO05D004456 9.3e-15 84.7 126 42.1
SEGI_34897 Sequoiadendron giganteum HOM05D003803 ORTHO05D004456 2.1e-14 83.6 76 50.0
Atru.chr7.1717 Acer truncatum HOM05D003803 ORTHO05D004456 2.7e-14 83.2 63 68.3
SGA_v2.0_scaffold21G09503 Striga asiatica HOM05D003803 ORTHO05D004456 3.5e-14 82.8 82 57.3
Lsat_1_v5_gn_4_94241 Lactuca sativa HOM05D003803 ORTHO05D004456 1.3e-13 80.9 214 35.5
CsaV3_1G041120 Cucumis sativus L. HOM05D003803 ORTHO05D004456 5.1e-13 79.0 57 68.4
Atru.chr1.4007 Acer truncatum HOM05D003803 ORTHO05D004456 8.7e-13 78.2 67 59.7
Sed0024871 Sechium edule HOM05D003803 ORTHO05D004456 8.7e-13 78.2 205 34.1
Glyma.07G040200 Glycine max HOM05D003803 ORTHO05D004456 1.1e-12 77.8 103 47.6
QL05p003994 Quercus lobata HOM05D003803 ORTHO05D004456 1.5e-12 77.4 91 46.2
HanXRQChr12g0354391 Helianthus annuus HOM05D003803 ORTHO05D004456 5.7e-12 75.5 116 40.5
RcHm_v2.0_Chr6g0246681 Rosa chinensis HOM05D003803 ORTHO05D004456 1.3e-11 74.3 61 57.4
TPR.G16739 Trifolium pratense HOM05D003803 ORTHO05D004456 1.3e-11 74.3 68 55.9
ECA232G3825 Erigeron canadensis HOM05D003803 ORTHO05D004456 1.6e-11 73.9 216 35.6
Rhsim03G0227100 Rhododendron simsii HOM05D003803 ORTHO05D004456 1.6e-11 73.9 57 70.2
MBI13_g43925_MAGBIO Magnolia biondii HOM05D003803 ORTHO05D004456 2.8e-11 73.2 81 44.4
COL.COLO4_30738 Corchorus olitorius HOM05D003803 ORTHO05D004456 4.8e-11 72.4 70 51.4
Lalb_Chr04g0263591 Lupinus albus HOM05D003803 ORTHO05D004456 4.8e-11 72.4 205 31.7
Psat4g168440 Pisum sativum HOM05D003803 ORTHO05D004456 1.4e-10 70.9 65 56.9
SGA_v2.0_scaffold609G53181 Striga asiatica HOM05D003803 ORTHO05D004456 1.8e-10 70.5 60 63.3
HanXRQChr09g0276811 Helianthus annuus HOM05D003803 ORTHO05D004456 2.4e-10 70.1 77 48.1
SEGI_33452 Sequoiadendron giganteum HOM05D003803 ORTHO05D004456 3.1e-10 69.7 104 41.3
Zm00001eb019600 Zea mays HOM05D003803 ORTHO05D004456 1.5e-09 67.4 104 40.4
Os03g0407400 Oryza sativa ssp. japonica HOM05D003803 ORTHO05D004456 1.7e-08 63.9 102 36.3
Thecc.06G122400 Theobroma cacao HOM05D003803 ORTHO05D004456 1.1e-07 61.2 202 30.7
vmacro06347 Vaccinium macrocarpon HOM05D003803 ORTHO05D004456 1.4e-07 60.8 55 61.8
FAN26G2608 Fragaria x ananassa HOM05D003803 ORTHO05D004456 3.2e-07 59.7 36 77.8
Haze_16046 Corylus avellana HOM05D000015 ORTHO05D000249 4.2e-07 59.3 96 40.6
Ca_09305_v3 Cicer arietinum L. HOM05D003803 ORTHO05D004456 9.3e-07 58.2 40 75.0
COL.COLO4_18088 Corchorus olitorius HOM05D003803 ORTHO05D004456 9.3e-07 58.2 36 77.8
Haze_26022 Corylus avellana HOM05D003803 ORTHO05D004456 1.2e-06 57.8 58 58.6
Rhsim05G0007000 Rhododendron simsii HOM05D003803 ORTHO05D004456 1.2e-06 57.8 36 77.8
PGSC0003DMG400027887 Solanum tuberosum HOM05D003803 ORTHO05D004456 2.7e-06 56.6 52 55.8
Nitab4.5_0009541g0010 Nicotiana tabacum HOM05D003803 ORTHO05D004456 3.6e-06 56.2 51 58.8
BcaC03g13781 Brassica carinata HOM05D003803 ORTHO05D004456 6.1e-06 55.5 45 62.2
ATR0626G331 Amborella trichopoda HOM05D002369 ORTHO05D002435 7.9e-06 55.1 71 45.1


User provided reference genes

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