Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.15G170900 Glycine max HOM05D003238 ORTHO05D003571 2.4e-91 339.0 192 100.0
Ca_26161_v3 Cicer arietinum L. HOM05D003238 ORTHO05D003571 7.2e-51 204.5 211 62.6
Medtr2g039890 Medicago truncatula HOM05D003238 ORTHO05D003571 1.4e-49 200.3 188 68.1
Phvul.009G231100 Phaseolus vulgaris HOM05D003238 ORTHO05D003571 1.8e-49 199.9 178 64.0
Lj6g0026431 Lotus japonicus HOM05D003238 ORTHO05D003571 7.7e-45 184.5 190 66.3
Psat1g140480 Pisum sativum HOM05D003238 ORTHO05D003571 3.3e-40 169.1 188 61.7
Lalb_Chr08g0232341 Lupinus albus HOM05D003238 ORTHO05D003571 9.7e-40 167.5 188 54.3
TPR.G13426 Trifolium pratense HOM05D003238 ORTHO05D003571 4.5e-37 158.7 182 63.2
arahy.Tifrunner.gnm1.ann1.57GLQM Arachis hypogaea HOM05D003238 ORTHO05D003571 5.0e-36 155.2 192 52.6
arahy.Tifrunner.gnm1.ann1.ZSY109 Arachis hypogaea HOM05D003238 ORTHO05D003571 8.8e-33 144.4 192 52.1
CANSAT56G2721 Cannabis sativa HOM05D003238 ORTHO05D003571 3.2e-27 125.9 186 48.9
MD15G1209800 Malus domestica HOM05D003238 ORTHO05D003571 4.2e-27 125.6 200 48.0
RcHm_v2.0_Chr2g0093691 Rosa chinensis HOM05D003238 ORTHO05D003571 5.5e-27 125.2 188 47.9
Cfa003064 Carpinus fangiana HOM05D003238 ORTHO05D003571 5.2e-25 118.6 186 47.8
MD02G1082200 Malus domestica HOM05D003238 ORTHO05D003571 6.8e-25 118.2 199 45.2
FAN26G0800 Fragaria x ananassa HOM05D003238 ORTHO05D003571 1.5e-24 117.1 189 47.1
Lj4C292G2 Lonicera japonica HOM05D003238 ORTHO05D003571 5.7e-24 115.2 209 44.0
FvH4_1g07820 Fragaria vesca HOM05D003238 ORTHO05D003571 7.5e-24 114.8 189 46.6
FAN19G2918 Fragaria x ananassa HOM05D003238 ORTHO05D003571 7.5e-24 114.8 189 46.6
FAN26G1453 Fragaria x ananassa HOM05D003238 ORTHO05D003571 7.5e-24 114.8 189 46.0
FAN23G0786 Fragaria x ananassa HOM05D003238 ORTHO05D003571 4.8e-23 112.1 189 46.6
FAN28G2679 Fragaria x ananassa HOM05D003238 ORTHO05D003571 1.1e-22 110.9 189 46.0
Eucgr.C00871 Eucalyptus grandis HOM05D003238 ORTHO05D003571 1.4e-22 110.5 177 40.1
TWI63G0468 Tripterygium wilfordii HOM05D003238 ORTHO05D003571 5.4e-22 108.6 180 46.7
Ciclev10009462m.g Citrus clementina HOM05D003238 ORTHO05D003571 1.6e-21 107.1 175 46.9
PGSC0003DMG400000275 Solanum tuberosum HOM05D003238 ORTHO05D003571 1.6e-21 107.1 193 44.6
Sopen12g003880 Solanum pennellii HOM05D003238 ORTHO05D003571 1.7e-20 103.6 173 45.7
Prupe.7G206700 Prunus persica HOM05D003238 ORTHO05D003571 2.9e-20 102.8 199 43.2
Solyc12g008950.2 Solanum lycopersicum HOM05D003238 ORTHO05D003571 1.1e-19 100.9 176 45.5
Actinidia25242 Actinidia chinensis HOM05D003238 ORTHO05D003571 2.5e-19 99.8 205 36.1
SGA_v2.0_scaffold10G05235 Striga asiatica HOM05D002348 ORTHO05D002512 2.5e-19 99.8 174 44.8
Migut.J00580 Erythranthe guttata HOM05D003238 ORTHO05D003571 4.2e-19 99.0 170 41.2
TWI32G0644 Tripterygium wilfordii HOM05D003238 ORTHO05D003571 5.5e-19 98.6 189 41.8
PGR142G0437 Punica granatum HOM05D003238 ORTHO05D003571 9.5e-19 97.8 211 32.7
MSTRG.6003 Avicennia marina HOM05D003238 ORTHO05D003571 1.2e-18 97.4 186 43.0
Peaxi162Scf00498g00436 Petunia axillaris HOM05D003238 ORTHO05D003571 4.7e-18 95.5 177 46.3
CSS0012761 Camellia sinensis var. sinensis HOM05D003238 ORTHO05D003571 8.0e-18 94.7 164 40.9
CSS0032672 Camellia sinensis var. sinensis HOM05D003238 ORTHO05D003571 8.0e-18 94.7 164 40.9
CiPaw.03G213000 Carya illinoinensis HOM05D003238 ORTHO05D003571 1.8e-17 93.6 150 37.3
DCAR_031341 Daucus carota HOM05D003238 ORTHO05D003571 3.0e-17 92.8 173 35.8
QL02p062228 Quercus lobata HOM05D003238 ORTHO05D003571 4.0e-17 92.4 184 42.4
Hma1.2p1_0169F.1_g074900 Hydrangea macrophylla HOM05D003238 ORTHO05D003571 3.4e-16 89.4 191 42.4
Oeu004201.1 Olea europaea HOM05D003238 ORTHO05D003571 1.3e-15 87.4 241 35.7
MELO3C006025.2 Cucumis melo HOM05D003238 ORTHO05D003571 1.7e-15 87.0 152 38.8
Rhsim05G0017200 Rhododendron simsii HOM05D003238 ORTHO05D003571 1.7e-15 87.0 199 40.2
THA.LOC104813494 Tarenaya hassleriana HOM05D003238 ORTHO05D003571 3.7e-15 85.9 158 39.2
ECA236G3496 Erigeron canadensis HOM05D003238 ORTHO05D003571 1.1e-14 84.3 171 37.4
CsaV3_3G008070 Cucumis sativus L. HOM05D003238 ORTHO05D003571 2.4e-14 83.2 147 37.4
HanXRQChr04g0126171 Helianthus annuus HOM05D003238 ORTHO05D003571 3.1e-14 82.8 168 37.5
Zm00001eb310990 Zea mays HOM05D003238 ORTHO05D003571 1.2e-13 80.9 149 38.9
BraA10t43522Z Brassica rapa HOM05D003238 ORTHO05D003571 2.0e-13 80.1 122 43.4
Oeu017609.1 Olea europaea HOM05D003238 ORTHO05D003571 4.5e-13 79.0 176 38.1
DCAR_031339 Daucus carota HOM05D003238 ORTHO05D003571 5.9e-13 78.6 142 36.6
Os09g0363700 Oryza sativa ssp. japonica HOM05D003238 ORTHO05D003571 7.8e-13 78.2 149 36.9
CiPaw.02G138700 Carya illinoinensis HOM05D003238 ORTHO05D003571 1.0e-12 77.8 63 65.1
GSVIVG01015179001 Vitis vinifera HOM05D003238 ORTHO05D003571 1.0e-12 77.8 172 40.1
MSTRG.4775 Avicennia marina HOM05D003238 ORTHO05D003571 1.7e-12 77.0 71 60.6
Prupe.3G046400 Prunus persica HOM05D003238 ORTHO05D003571 2.9e-12 76.3 59 61.0
Carub.0002s1954 Capsella rubella HOM05D003238 ORTHO05D003571 3.8e-12 75.9 79 46.8
Dinv36782 Davidia involucrata HOM05D003238 ORTHO05D003571 5.0e-12 75.5 191 39.3
Nitab4.5_0002824g0070 Nicotiana tabacum HOM05D003238 ORTHO05D003571 6.6e-12 75.1 197 39.1
BcaB08g36028 Brassica carinata HOM05D003238 ORTHO05D003571 1.5e-11 73.9 128 39.8
vmacro17137 Vaccinium macrocarpon HOM05D003238 ORTHO05D003571 1.5e-11 73.9 177 38.4
ClCG05G000830 Citrullus lanatus HOM05D003238 ORTHO05D003571 1.9e-11 73.6 152 34.2
Potri.004G095300 Populus trichocarpa HOM05D003238 ORTHO05D003571 1.9e-11 73.6 82 52.4
SalBow6G6091 Salvia bowleyana HOM05D003238 ORTHO05D003571 1.9e-11 73.6 77 53.2
Sed0023757 Sechium edule HOM05D003238 ORTHO05D003571 1.9e-11 73.6 158 35.4
Migut.D00960 Erythranthe guttata HOM05D003238 ORTHO05D003571 4.3e-11 72.4 71 52.1
Thhalv10019375m.g Eutrema salsugineum HOM05D003238 ORTHO05D003571 4.3e-11 72.4 83 45.8
COL.COLO4_18181 Corchorus olitorius HOM05D003238 ORTHO05D003571 5.6e-11 72.0 62 61.3
Lsat_1_v5_gn_8_86760 Lactuca sativa HOM05D003238 ORTHO05D003571 7.3e-11 71.6 166 33.7
Lj3g0007714 Lotus japonicus HOM05D003238 ORTHO05D003571 7.3e-11 71.6 79 50.6
BcaC03g14186 Brassica carinata HOM05D003238 ORTHO05D003571 9.5e-11 71.2 146 37.7
C09p48650 Brassica napus HOM05D003238 ORTHO05D003571 2.1e-10 70.1 132 40.9
BcaC04g20028 Brassica carinata HOM05D003238 ORTHO05D003571 3.6e-10 69.3 134 40.3
A02p08810 Brassica napus HOM05D003238 ORTHO05D003571 3.6e-10 69.3 145 37.2
C02p14700 Brassica napus HOM05D003238 ORTHO05D003571 3.6e-10 69.3 146 37.0
BolC2t07595H Brassica oleracea HOM05D003238 ORTHO05D003571 3.6e-10 69.3 146 37.0
BolC9t57711H Brassica oleracea HOM05D003238 ORTHO05D003571 3.6e-10 69.3 134 40.3
BraA02t05948Z Brassica rapa HOM05D003238 ORTHO05D003571 3.6e-10 69.3 145 37.2
Thhalv10014757m.g Eutrema salsugineum HOM05D003238 ORTHO05D003571 3.6e-10 69.3 144 36.1
HanXRQChr02g0031751 Helianthus annuus HOM05D003238 ORTHO05D003571 3.6e-10 69.3 78 51.3
HPP92_006473 Vanilla planifolia HOM05D003238 ORTHO05D003571 3.6e-10 69.3 44 70.5
RcHm_v2.0_Chr3g0459511 Rosa chinensis HOM05D003238 ORTHO05D003571 4.7e-10 68.9 57 56.1
FAN14G3690 Fragaria x ananassa HOM05D003238 ORTHO05D003571 6.1e-10 68.6 68 54.4
TAR624G0020 Trochodendron aralioides HOM05D003238 ORTHO05D003571 6.1e-10 68.6 56 62.5
Glyma.07G008200 Glycine max HOM05D003238 ORTHO05D003571 8.0e-10 68.2 79 50.6
BcaB05g22307 Brassica carinata HOM05D003238 ORTHO05D003571 1.0e-09 67.8 117 40.2
CARHR270740 Cardamine hirsuta HOM05D003238 ORTHO05D003571 1.0e-09 67.8 43 69.8
Sed0010916 Sechium edule HOM05D003238 ORTHO05D003571 1.0e-09 67.8 80 50.0
FvH4_6g33970 Fragaria vesca HOM05D003238 ORTHO05D003571 1.4e-09 67.4 68 54.4
FAN09G2388 Fragaria x ananassa HOM05D003238 ORTHO05D003571 1.4e-09 67.4 68 54.4
unitig_26.g9174 Utricularia gibba HOM05D003238 ORTHO05D003571 1.4e-09 67.4 132 35.6
Glyma.08G191200 Glycine max HOM05D003238 ORTHO05D003571 1.8e-09 67.0 79 49.4
SalBow7G1866 Salvia bowleyana HOM05D003238 ORTHO05D003571 1.8e-09 67.0 81 46.9
Phvul.010G137200 Phaseolus vulgaris HOM05D003238 ORTHO05D003571 2.3e-09 66.6 80 47.5
FAN05G5076 Fragaria x ananassa HOM05D003238 ORTHO05D003571 3.1e-09 66.2 68 52.9
Lsat_1_v5_gn_1_35700 Lactuca sativa HOM05D003238 ORTHO05D003571 3.1e-09 66.2 81 49.4
TAR362G1092 Trochodendron aralioides HOM05D003238 ORTHO05D003571 3.1e-09 66.2 53 64.2
HanXRQChr06g0178591 Helianthus annuus HOM05D003238 ORTHO05D003571 4.0e-09 65.9 101 42.6
A03p13050 Brassica napus HOM05D003238 ORTHO05D003571 5.2e-09 65.5 55 58.2
BraA03t10615Z Brassica rapa HOM05D003238 ORTHO05D003571 5.2e-09 65.5 55 58.2
MD09G1190500 Malus domestica HOM05D003238 ORTHO05D003571 5.2e-09 65.5 58 60.3
RcHm_v2.0_Chr2g0144001 Rosa chinensis HOM05D003238 ORTHO05D003571 5.2e-09 65.5 65 53.8
Aa31LG7G2200 Aethionema arabicum HOM05D003238 ORTHO05D003571 8.9e-09 64.7 72 50.0
Potri.006G148000 Populus trichocarpa HOM05D003238 ORTHO05D003571 8.9e-09 64.7 77 48.1
TAR624G1148 Trochodendron aralioides HOM05D003238 ORTHO05D003571 8.9e-09 64.7 79 48.1
Gohir.A10G058000 Gossypium hirsutum HOM05D003238 ORTHO05D003571 1.5e-08 63.9 87 42.5
Nn6g35523 Nelumbo nucifera HOM05D003238 ORTHO05D003571 2.6e-08 63.2 79 46.8
MD13G1283500 Malus domestica HOM05D003238 ORTHO05D003571 3.4e-08 62.8 109 37.6
Haze_25933 Corylus avellana HOM05D003238 ORTHO05D003571 4.4e-08 62.4 79 44.3
Sed0015805 Sechium edule HOM05D003238 ORTHO05D003571 4.4e-08 62.4 79 46.8
MELO3C024380.2 Cucumis melo HOM05D003238 ORTHO05D003571 5.8e-08 62.0 84 44.0
Sp1g15630 Schrenkiella parvula HOM05D003238 ORTHO05D003571 5.8e-08 62.0 81 40.7
arahy.Tifrunner.gnm1.ann1.7T9QNI Arachis hypogaea HOM05D003238 ORTHO05D003571 7.5e-08 61.6 79 45.6
Gohir.D10G059800 Gossypium hirsutum HOM05D003238 ORTHO05D003571 7.5e-08 61.6 88 42.0
TAR375G0996 Trochodendron aralioides HOM05D003238 ORTHO05D003571 7.5e-08 61.6 56 57.1
Cfa003563 Carpinus fangiana HOM05D003238 ORTHO05D003571 9.8e-08 61.2 80 50.0
CsaV3_7G034700 Cucumis sativus L. HOM05D003238 ORTHO05D003571 9.8e-08 61.2 79 46.8
Gorai.011G063800 Gossypium raimondii HOM05D003238 ORTHO05D003571 9.8e-08 61.2 88 42.0
A09p28910 Brassica napus HOM05D003238 ORTHO05D003571 1.3e-07 60.8 82 46.3
BraA09t38454Z Brassica rapa HOM05D003238 ORTHO05D003571 1.3e-07 60.8 82 46.3
Dinv37898 Davidia involucrata HOM05D003238 ORTHO05D003571 1.3e-07 60.8 78 47.4
Sp6g18700 Schrenkiella parvula HOM05D003238 ORTHO05D003571 1.3e-07 60.8 159 34.0
Hund20825 Selenicereus undatus HOM05D003238 ORTHO05D003571 1.3e-07 60.8 76 44.7
PGR102G1556 Punica granatum HOM05D003238 ORTHO05D003571 2.2e-07 60.1 83 42.2
Lalb_Chr04g0263271 Lupinus albus HOM05D003238 ORTHO05D003571 2.9e-07 59.7 79 45.6
ClCG09G000780 Citrullus lanatus HOM05D003238 ORTHO05D003571 4.9e-07 58.9 84 42.9
arahy.Tifrunner.gnm1.ann1.HS5001 Arachis hypogaea HOM05D003238 ORTHO05D003571 6.4e-07 58.5 77 42.9
CARHR018090 Cardamine hirsuta HOM05D003238 ORTHO05D003571 6.4e-07 58.5 77 42.9
AUR62009849 Chenopodium quinoa HOM05D003238 ORTHO05D003571 6.4e-07 58.5 77 41.6
Manes.11G024400 Manihot esculenta HOM05D003238 ORTHO05D003571 6.4e-07 58.5 87 41.4
BcaNung05566 Brassica carinata HOM05D003238 ORTHO05D003571 8.3e-07 58.2 64 46.9
C05p15920 Brassica napus HOM05D003238 ORTHO05D003571 8.3e-07 58.2 64 46.9
BolC5t30295H Brassica oleracea HOM05D003238 ORTHO05D003571 8.3e-07 58.2 64 46.9
MBI04_g36912_MAGBIO Magnolia biondii HOM05D003238 ORTHO05D003571 8.3e-07 58.2 72 43.1
AL1G29780 Arabidopsis lyrata HOM05D003238 ORTHO05D003571 1.1e-06 57.8 80 42.5
HPP92_006471 Vanilla planifolia HOM05D003238 ORTHO05D003571 1.1e-06 57.8 63 52.4
Haze_15983 Corylus avellana HOM05D003238 ORTHO05D003571 1.4e-06 57.4 93 44.1
Sabra04G0064600 Salix brachista HOM05D003238 ORTHO05D003571 1.4e-06 57.4 84 42.9
BcaNung05568 Brassica carinata HOM05D003238 ORTHO05D003571 1.9e-06 57.0 64 46.9
A06p13430 Brassica napus HOM05D003238 ORTHO05D003571 1.9e-06 57.0 64 46.9
BraA06t24495Z Brassica rapa HOM05D003238 ORTHO05D003571 1.9e-06 57.0 64 46.9
Medtr8g017610 Medicago truncatula HOM05D003238 ORTHO05D003571 1.9e-06 57.0 79 45.6
Thecc.06G114200 Theobroma cacao HOM05D003238 ORTHO05D003571 1.9e-06 57.0 88 44.3
QL05p009982 Quercus lobata HOM05D003238 ORTHO05D003571 2.4e-06 56.6 92 41.3
THA.LOC109116473 Tarenaya hassleriana HOM05D003238 ORTHO05D003571 2.4e-06 56.6 82 40.2
GSVIVG01016802001 Vitis vinifera HOM05D003238 ORTHO05D003571 2.4e-06 56.6 79 44.3
AT1G17490 Arabidopsis thaliana HOM05D003238 ORTHO05D003571 4.1e-06 55.8 80 42.5
Duzib160G0096 Durio zibethinus HOM05D003238 ORTHO05D003571 4.1e-06 55.8 88 40.9
Nitab4.5_0000255g0290 Nicotiana tabacum HOM05D003238 ORTHO05D003571 4.1e-06 55.8 76 42.1
Cc04_g01740 Coffea canephora HOM05D003238 ORTHO05D003571 5.4e-06 55.5 80 41.2
Ca_23334_v3 Cicer arietinum L. HOM05D003238 ORTHO05D003571 9.2e-06 54.7 79 44.3


User provided reference genes

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