Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.15G165600 Glycine max HOM05D005029 ORTHO05D006052 9.0e-157 557.0 302 100.0
Glyma.09G059300 Glycine max HOM05D005029 ORTHO05D006052 6.9e-141 504.2 302 87.7
VMungo1309G1415 Vigna mungo HOM05D005029 ORTHO05D006052 6.9e-133 477.6 303 85.1
Phvul.009G236500 Phaseolus vulgaris HOM05D005029 ORTHO05D006052 2.7e-129 465.7 303 83.8
Medtr2g037940 Medicago truncatula HOM05D005029 ORTHO05D006052 2.5e-114 416.0 304 75.3
Lj6g0016757 Lotus japonicus HOM05D005029 ORTHO05D006052 3.2e-114 415.6 275 81.1
Psat1g145480 Pisum sativum HOM05D005029 ORTHO05D006052 6.1e-113 411.4 263 83.3
Ca_02102_v3 Cicer arietinum L. HOM05D005029 ORTHO05D006052 1.1e-109 400.6 305 74.8
Lalb_Chr11g0074801 Lupinus albus HOM05D005029 ORTHO05D006052 8.0e-105 384.4 279 78.5
TPR.G7936 Trifolium pratense HOM05D005029 ORTHO05D006052 1.0e-104 384.0 309 71.2
arahy.Tifrunner.gnm1.ann1.K38ATV Arachis hypogaea HOM05D005029 ORTHO05D006052 5.9e-100 368.2 315 71.4
Dinv41171 Davidia involucrata HOM05D005029 ORTHO05D006052 3.5e-92 342.4 275 70.5
Duzib170G0048 Durio zibethinus HOM05D005029 ORTHO05D006052 5.0e-91 338.6 265 70.6
Haze_22015 Corylus avellana HOM05D005029 ORTHO05D006052 1.1e-90 337.4 277 71.5
Gohir.D13G213100 Gossypium hirsutum HOM05D005029 ORTHO05D006052 1.1e-90 337.4 276 69.2
Gorai.013G243400 Gossypium raimondii HOM05D005029 ORTHO05D006052 1.1e-90 337.4 276 69.2
Gohir.A13G208700 Gossypium hirsutum HOM05D005029 ORTHO05D006052 3.2e-90 335.9 276 69.2
Lalb_Chr13g0300031 Lupinus albus HOM05D005029 ORTHO05D006052 4.2e-90 335.5 272 71.0
Cfa013448 Carpinus fangiana HOM05D005029 ORTHO05D006052 2.7e-89 332.8 277 70.8
CiPaw.08G032800 Carya illinoinensis HOM05D005029 ORTHO05D006052 2.7e-89 332.8 264 70.1
COL.COLO4_08419 Corchorus olitorius HOM05D005029 ORTHO05D006052 1.8e-88 330.1 270 68.5
Duzib150G1033 Durio zibethinus HOM05D005029 ORTHO05D006052 2.8e-86 322.8 277 67.1
Thecc.09G185600 Theobroma cacao HOM05D005029 ORTHO05D006052 2.8e-86 322.8 279 67.7
Manes.06G020200 Manihot esculenta HOM05D005029 ORTHO05D006052 1.2e-84 317.4 275 64.4
CiPaw.07G196600 Carya illinoinensis HOM05D005029 ORTHO05D006052 5.9e-84 315.1 266 68.0
Cpa.g.c27842.2 Carica papaya HOM05D005029 ORTHO05D006052 1.1e-82 310.8 280 63.9
CANSAT11G1104 Cannabis sativa HOM05D005029 ORTHO05D006052 1.9e-82 310.1 308 64.6
Potri.006G075900 Populus trichocarpa HOM05D005029 ORTHO05D006052 9.8e-79 297.7 282 61.7
TAR626G1810 Trochodendron aralioides HOM05D005029 ORTHO05D006052 9.8e-79 297.7 275 64.7
EL10Ac8g18332 Beta vulgaris HOM05D005029 ORTHO05D006052 2.9e-78 296.2 268 65.3
MD16G1249500 Malus domestica HOM05D005029 ORTHO05D006052 1.4e-77 293.9 269 63.2
TWI34G0612 Tripterygium wilfordii HOM05D005029 ORTHO05D006052 1.8e-77 293.5 277 66.1
AUR62021347 Chenopodium quinoa HOM05D005029 ORTHO05D006052 2.4e-77 293.1 276 61.6
QL02p046501 Quercus lobata HOM05D005029 ORTHO05D006052 4.1e-77 292.4 375 51.5
Nn7g36649 Nelumbo nucifera HOM05D005029 ORTHO05D006052 1.6e-76 290.4 269 64.7
TAR383G0036 Trochodendron aralioides HOM05D005029 ORTHO05D006052 1.6e-76 290.4 266 65.8
Prupe.1G076300 Prunus persica HOM05D005029 ORTHO05D006052 2.0e-76 290.0 272 62.1
AUR62033261 Chenopodium quinoa HOM05D005029 ORTHO05D006052 4.6e-76 288.9 277 61.4
MSTRG.26542 Avicennia marina HOM05D005029 ORTHO05D006052 1.0e-75 287.7 247 66.0
CsaV3_1G031840 Cucumis sativus L. HOM05D005029 ORTHO05D006052 3.9e-75 285.8 264 65.2
Potri.018G143000 Populus trichocarpa HOM05D005029 ORTHO05D006052 3.9e-75 285.8 306 59.2
Nitab4.5_0000617g0020 Nicotiana tabacum HOM05D005029 ORTHO05D006052 5.0e-75 285.4 279 61.3
arahy.Tifrunner.gnm1.ann1.J7B49U Arachis hypogaea HOM05D005029 ORTHO05D006052 2.1e-73 280.0 197 80.2
Actinidia01279 Actinidia chinensis HOM05D005029 ORTHO05D006052 2.8e-73 279.6 274 63.5
Eucgr.C00120 Eucalyptus grandis HOM05D005029 ORTHO05D006052 2.8e-73 279.6 285 60.0
Sabra18G0116800 Salix brachista HOM05D005029 ORTHO05D006052 3.6e-73 279.3 312 57.7
Peaxi162Scf01600g00016 Petunia axillaris HOM05D005029 ORTHO05D006052 4.7e-73 278.9 276 59.8
AL7G22280 Arabidopsis lyrata HOM05D005029 ORTHO05D006052 6.2e-73 278.5 277 61.4
Carub.0007s1068 Capsella rubella HOM05D005029 ORTHO05D006052 6.2e-73 278.5 277 62.1
TWI32G0396 Tripterygium wilfordii HOM05D005029 ORTHO05D006052 6.2e-73 278.5 284 63.7
Sabra06G0056600 Salix brachista HOM05D005029 ORTHO05D006052 2.0e-71 273.5 300 56.3
PGSC0003DMG400028729 Solanum tuberosum HOM05D005029 ORTHO05D006052 2.6e-71 273.1 276 58.3
THA.LOC104803957 Tarenaya hassleriana HOM05D005029 ORTHO05D006052 2.6e-71 273.1 267 61.8
THA.LOC104803983 Tarenaya hassleriana HOM05D005029 ORTHO05D006052 2.6e-71 273.1 267 61.8
RcHm_v2.0_Chr4g0399711 Rosa chinensis HOM05D005029 ORTHO05D006052 5.8e-71 271.9 271 59.4
Solyc07g008780.3 Solanum lycopersicum HOM05D005029 ORTHO05D006052 7.5e-71 271.6 276 57.6
Dinv25437 Davidia involucrata HOM05D005029 ORTHO05D006052 1.3e-70 270.8 260 63.8
Sopen07g004720 Solanum pennellii HOM05D005029 ORTHO05D006052 1.3e-70 270.8 276 58.0
Hund26310 Selenicereus undatus HOM05D005029 ORTHO05D006052 2.9e-70 269.6 268 60.1
Nitab4.5_0008862g0020 Nicotiana tabacum HOM05D005029 ORTHO05D006052 3.7e-70 269.2 281 58.7
Thhalv10025919m.g Eutrema salsugineum HOM05D005029 ORTHO05D006052 6.4e-70 268.5 277 60.3
CARHR237880 Cardamine hirsuta HOM05D005029 ORTHO05D006052 8.3e-70 268.1 277 60.3
Sp7g27770 Schrenkiella parvula HOM05D005029 ORTHO05D006052 1.9e-69 266.9 281 59.8
AT4G29960 Arabidopsis thaliana HOM05D005029 ORTHO05D006052 2.4e-69 266.5 277 60.3
Oeu034799.1 Olea europaea HOM05D005029 ORTHO05D006052 5.4e-69 265.4 247 61.5
FvH4_4g07340 Fragaria vesca HOM05D005029 ORTHO05D006052 7.0e-69 265.0 272 57.7
GSVIVG01010867001 Vitis vinifera HOM05D005029 ORTHO05D006052 7.0e-69 265.0 277 57.0
Sc16g0010440 Simmondsia chinensis HOM05D005029 ORTHO05D006052 1.2e-68 264.2 275 59.3
MELO3C017433.2 Cucumis melo HOM05D005029 ORTHO05D006052 1.6e-68 263.8 285 58.6
FAN07G2409 Fragaria x ananassa HOM05D005029 ORTHO05D006052 2.0e-68 263.5 262 58.4
FAN12G1304 Fragaria x ananassa HOM05D005029 ORTHO05D006052 3.5e-68 262.7 272 57.4
Aqoxy7G02787 Aquilegia oxysepala HOM05D005029 ORTHO05D006052 4.6e-68 262.3 253 64.8
Atru.chr7.763 Acer truncatum HOM05D005029 ORTHO05D006052 1.3e-67 260.8 278 60.4
Atru.chr7.783 Acer truncatum HOM05D005029 ORTHO05D006052 1.3e-67 260.8 278 60.4
MBI13_g01742_MAGBIO Magnolia biondii HOM05D005029 ORTHO05D006052 2.3e-67 260.0 263 58.9
Ah.14g083530 Amaranthus hybridus HOM05D005029 ORTHO05D006052 3.9e-67 259.2 268 57.5
Cc00_g10760 Coffea canephora HOM05D005029 ORTHO05D006052 8.6e-67 258.1 254 60.2
PSO170G2568 Papaver somniferum HOM05D005029 ORTHO05D006052 8.6e-67 258.1 278 61.9
Sed0026503 Sechium edule HOM05D005029 ORTHO05D006052 8.6e-67 258.1 279 59.9
BolC3t21207H Brassica oleracea HOM05D005029 ORTHO05D006052 1.1e-66 257.7 273 59.0
PSO063G5693 Papaver somniferum HOM05D005029 ORTHO05D006052 1.9e-66 256.9 285 60.7
FAN22G0020 Fragaria x ananassa HOM05D005029 ORTHO05D006052 2.5e-66 256.5 276 55.4
SGA_v2.0_scaffold31G12759 Striga asiatica HOM05D005029 ORTHO05D006052 3.3e-66 256.1 275 59.3
FAN17G0071 Fragaria x ananassa HOM05D005029 ORTHO05D006052 4.3e-66 255.8 286 55.2
SHI09006 Sapria himalayana HOM05D005029 ORTHO05D006052 7.3e-66 255.0 268 57.8
Nn2g14879 Nelumbo nucifera HOM05D005029 ORTHO05D006052 1.6e-65 253.8 275 61.5
Aa31LG2G20590 Aethionema arabicum HOM05D005029 ORTHO05D006052 2.8e-65 253.1 269 58.7
Ah.09g230060 Amaranthus hybridus HOM05D005029 ORTHO05D006052 2.8e-65 253.1 279 55.2
DCAR_030818 Daucus carota HOM05D005029 ORTHO05D006052 2.8e-65 253.1 248 61.3
MBI19_g21652_MAGBIO Magnolia biondii HOM05D005029 ORTHO05D006052 8.1e-65 251.5 274 56.2
Ciclev10009010m.g Citrus clementina HOM05D005029 ORTHO05D006052 1.1e-64 251.1 266 58.6
THA.LOC104814654 Tarenaya hassleriana HOM05D005029 ORTHO05D006052 4.0e-64 249.2 281 57.3
HanXRQChr13g0426591 Helianthus annuus HOM05D005029 ORTHO05D006052 3.4e-63 246.1 274 56.9
BcaC01g01206 Brassica carinata HOM05D005029 ORTHO05D006052 2.2e-62 243.4 275 56.4
BcaNung00506 Brassica carinata HOM05D005029 ORTHO05D006052 1.9e-61 240.4 245 64.5
ClCG06G013560 Citrullus lanatus HOM05D005029 ORTHO05D006052 1.0e-59 234.6 279 56.6
Lsat_1_v5_gn_3_137280 Lactuca sativa HOM05D005029 ORTHO05D006052 1.7e-59 233.8 252 57.1
PGR142G1735 Punica granatum HOM05D005029 ORTHO05D006052 1.7e-59 233.8 266 59.4
BraA08t33909Z Brassica rapa HOM05D005029 ORTHO05D006052 2.1e-57 226.9 227 59.9
BcaC09g51777 Brassica carinata HOM05D000106 ORTHO05D000160 1.2e-55 221.1 253 56.9
CSS0012939 Camellia sinensis var. sinensis HOM05D005029 ORTHO05D006052 2.0e-55 220.3 287 55.1
ATR0626G110 Amborella trichopoda HOM05D005029 ORTHO05D006052 4.4e-55 219.2 276 49.3
BcaC07g37961 Brassica carinata HOM05D005029 ORTHO05D006052 7.6e-55 218.4 247 56.7
ECA240G3783 Erigeron canadensis HOM05D005029 ORTHO05D006052 1.7e-54 217.2 229 56.8
A08p19470 Brassica napus HOM05D005029 ORTHO05D006052 2.2e-54 216.9 271 51.3
BraA01t00761Z Brassica rapa HOM05D005029 ORTHO05D006052 4.1e-53 212.6 282 53.2
unitig_699.g19404 Utricularia gibba HOM05D005029 ORTHO05D006052 1.2e-52 211.1 259 51.4
Migut.L01885 Erythranthe guttata HOM05D005029 ORTHO05D006052 1.6e-52 210.7 278 52.5
BcaC09g51764 Brassica carinata HOM05D005029 ORTHO05D006052 4.6e-52 209.1 249 56.2
BolC1t00902H Brassica oleracea HOM05D005029 ORTHO05D006052 8.6e-51 204.9 277 51.3
CDE04G3679 Ceratophyllum demersum HOM05D005029 ORTHO05D006052 4.3e-50 202.6 278 48.6
C01p09110 Brassica napus HOM05D005029 ORTHO05D006052 1.2e-49 201.1 250 54.4
unitig_27.g24759 Utricularia gibba HOM05D005029 ORTHO05D006052 2.1e-49 200.3 254 52.4
CDE02G0552 Ceratophyllum demersum HOM05D005029 ORTHO05D006052 1.1e-48 198.0 246 51.6
Oeu044675.2 Olea europaea HOM05D005029 ORTHO05D006052 1.1e-48 198.0 280 48.9
C03p88970 Brassica napus HOM05D005029 ORTHO05D006052 2.4e-48 196.8 245 53.1
A01p08140 Brassica napus HOM05D005029 ORTHO05D006052 1.2e-47 194.5 247 53.0
C07p57380 Brassica napus HOM05D005029 ORTHO05D006052 1.8e-40 170.6 189 60.8
Lj5A672T26 Lonicera japonica HOM05D005029 ORTHO05D006052 5.3e-40 169.1 163 60.7
HPP92_004703 Vanilla planifolia HOM05D005029 ORTHO05D006052 3.4e-39 166.4 233 50.2
Duzib168G1982 Durio zibethinus HOM05D005029 ORTHO05D006052 1.7e-38 164.1 151 65.6
Os04g0606800 Oryza sativa ssp. japonica HOM05D005029 ORTHO05D006052 3.2e-37 159.8 245 47.8
Zm00001eb071460 Zea mays HOM05D005029 ORTHO05D006052 4.2e-37 159.5 252 46.0
Rhsim01G0118000 Rhododendron simsii HOM05D005029 ORTHO05D006052 1.6e-36 157.5 225 44.9
SEGI_23735 Sequoiadendron giganteum HOM05D005029 ORTHO05D006052 3.0e-35 153.3 274 40.9
Zm00001eb430500 Zea mays HOM05D005029 ORTHO05D006052 6.6e-35 152.1 252 44.8
Migut.J00802 Erythranthe guttata HOM05D005029 ORTHO05D006052 4.3e-34 149.4 284 40.8
Mapoly0076s0086 Marchantia polymorpha HOM05D005029 ORTHO05D006052 2.1e-33 147.1 289 37.0
AagrBONN_evm.TU.Sc2ySwM_368.2110 Anthoceros agrestis HOM05D005029 ORTHO05D006052 9.9e-31 138.3 263 37.6
SMO358G0278 Selaginella moellendorffii HOM05D005029 ORTHO05D006052 1.1e-29 134.8 267 40.1
BcaB06g28011 Brassica carinata HOM05D005029 ORTHO05D006052 5.1e-27 125.9 97 72.2
Pp3c9_8340 Physcomitrium patens HOM05D005029 ORTHO05D006052 8.7e-27 125.2 286 35.0
BcaC05g25672 Brassica carinata HOM05D005029 ORTHO05D006052 4.3e-26 122.9 201 45.3
A03p59350 Brassica napus HOM05D005029 ORTHO05D006052 2.7e-20 103.6 258 36.0
BolC6t39910H Brassica oleracea HOM05D005029 ORTHO05D006052 1.1e-18 98.2 170 40.6
BcaB04g18770 Brassica carinata HOM05D005029 ORTHO05D006052 3.3e-18 96.7 73 74.0
vmacro20818 Vaccinium macrocarpon HOM05D005029 ORTHO05D006052 2.7e-12 77.0 63 58.7
BcaB06g26390 Brassica carinata HOM05D005029 ORTHO05D006052 4.6e-12 76.3 71 57.7
BolC5t30251H Brassica oleracea HOM05D005029 ORTHO05D006052 1.8e-08 64.3 82 46.3
CBR_g52634 Chara braunii HOM05D005029 ORTHO05D006052 2.4e-08 63.9 245 32.2
Lj5C672T2 Lonicera japonica HOM05D005029 ORTHO05D006052 2.6e-07 60.5 57 56.1
Pp3c9_14880 Physcomitrium patens HOM05D005029 ORTHO05D006052 4.5e-07 59.7 119 34.5
Aa31LG8G16260 Aethionema arabicum HOM05D005029 ORTHO05D006052 7.7e-07 58.9 83 43.4
Aqoxy377s001 Aquilegia oxysepala HOM05D005029 ORTHO05D006052 2.9e-06 57.0 42 61.9


User provided reference genes

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