Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.15G165300 Glycine max HOM05D004436 ORTHO05D005179 2.2e-225 785.4 425 100.0
Phvul.009G236700 Phaseolus vulgaris HOM05D004436 ORTHO05D005179 7.1e-176 620.9 389 79.7
Lalb_Chr08g0233321 Lupinus albus HOM05D004436 ORTHO05D005179 1.2e-151 540.4 384 72.4
Lj6g0016044 Lotus japonicus HOM05D004436 ORTHO05D005179 3.3e-149 532.3 390 69.7
Ca_02096_v3 Cicer arietinum L. HOM05D004436 ORTHO05D005179 1.5e-133 480.3 389 65.3
arahy.Tifrunner.gnm1.ann1.4RDH3B Arachis hypogaea HOM05D004436 ORTHO05D005179 3.7e-132 475.7 391 63.4
arahy.Tifrunner.gnm1.ann1.0TY6IG Arachis hypogaea HOM05D004436 ORTHO05D005179 4.1e-131 472.2 391 63.4
Psat1g144000 Pisum sativum HOM05D004436 ORTHO05D005179 1.3e-124 450.7 387 60.7
CiPaw.01G221800 Carya illinoinensis HOM05D004436 ORTHO05D005179 2.4e-123 446.4 392 58.7
Medtr7g104810 Medicago truncatula HOM05D004436 ORTHO05D005179 3.8e-121 439.1 389 59.1
CiPaw.05G181900 Carya illinoinensis HOM05D004436 ORTHO05D005179 8.5e-121 438.0 392 58.2
Medtr2g037880 Medicago truncatula HOM05D004436 ORTHO05D005179 1.2e-119 434.1 386 58.5
GSVIVG01016817001 Vitis vinifera HOM05D004436 ORTHO05D005179 3.6e-119 432.6 389 58.1
TPR.G13789 Trifolium pratense HOM05D004436 ORTHO05D005179 4.4e-117 425.6 390 59.2
Eucgr.F03167 Eucalyptus grandis HOM05D004436 ORTHO05D005179 7.5e-117 424.9 385 57.1
CsaV3_7G034640 Cucumis sativus L. HOM05D004436 ORTHO05D005179 3.1e-115 419.5 391 57.0
MELO3C024372.2 Cucumis melo HOM05D004436 ORTHO05D005179 4.5e-114 415.6 390 55.9
Prupe.3G044800 Prunus persica HOM05D004436 ORTHO05D005179 1.0e-113 414.5 387 54.8
ClCG09G000840 Citrullus lanatus HOM05D004436 ORTHO05D005179 1.1e-112 411.0 394 55.3
Medtr2g037460 Medicago truncatula HOM05D004436 ORTHO05D005179 1.4e-110 404.1 385 56.1
MD09G1187900 Malus domestica HOM05D004436 ORTHO05D005179 4.0e-110 402.5 389 54.2
Cpa.g.sc25.86 Carica papaya HOM05D004436 ORTHO05D005179 2.0e-109 400.2 406 53.0
Haze_15997 Corylus avellana HOM05D004436 ORTHO05D005179 2.2e-108 396.7 429 49.4
Ciclev10025597m.g Citrus clementina HOM05D004436 ORTHO05D005179 1.4e-107 394.0 388 53.6
Sed0007780 Sechium edule HOM05D004436 ORTHO05D005179 2.4e-107 393.3 394 53.6
PGR119G1065 Punica granatum HOM05D004436 ORTHO05D005179 9.2e-107 391.3 384 52.9
Actinidia32167 Actinidia chinensis HOM05D004436 ORTHO05D005179 1.6e-106 390.6 395 53.7
Manes.04G142200 Manihot esculenta HOM05D004436 ORTHO05D005179 2.0e-106 390.2 413 51.8
TAR375G0086 Trochodendron aralioides HOM05D004436 ORTHO05D005179 2.7e-106 389.8 391 52.4
Dinv03512 Davidia involucrata HOM05D004436 ORTHO05D005179 3.5e-106 389.4 394 53.6
vmacro22224 Vaccinium macrocarpon HOM05D004436 ORTHO05D005179 2.3e-105 386.7 384 54.2
Rhsim08G0236100 Rhododendron simsii HOM05D004436 ORTHO05D005179 3.8e-105 386.0 390 53.3
CSS0015890 Camellia sinensis var. sinensis HOM05D004436 ORTHO05D005179 5.0e-105 385.6 382 53.7
Manes.11G023100 Manihot esculenta HOM05D004436 ORTHO05D005179 1.9e-104 383.6 413 52.1
CANSAT56G1493 Cannabis sativa HOM05D004436 ORTHO05D005179 5.6e-104 382.1 387 53.0
Lj5A40G74 Lonicera japonica HOM05D004436 ORTHO05D005179 2.8e-103 379.8 388 53.4
Potri.001G198600 Populus trichocarpa HOM05D004436 ORTHO05D005179 4.7e-103 379.0 415 51.3
COL.COLO4_30482 Corchorus olitorius HOM05D004436 ORTHO05D005179 1.0e-102 377.9 401 52.4
Thecc.03G227200 Theobroma cacao HOM05D004436 ORTHO05D005179 1.0e-102 377.9 408 50.2
PGSC0003DMG400016304 Solanum tuberosum HOM05D004436 ORTHO05D005179 1.4e-102 377.5 388 51.0
RcHm_v2.0_Chr2g0144531 Rosa chinensis HOM05D004436 ORTHO05D005179 3.1e-102 376.3 387 51.9
Duzib205G0267 Durio zibethinus HOM05D004436 ORTHO05D005179 4.0e-102 375.9 399 50.9
THA.LOC104804933 Tarenaya hassleriana HOM05D004436 ORTHO05D005179 5.2e-102 375.6 396 50.3
TWI23G0436 Tripterygium wilfordii HOM05D004436 ORTHO05D005179 1.2e-101 374.4 387 52.2
Nitab4.5_0000035g0090 Nicotiana tabacum HOM05D004436 ORTHO05D005179 4.4e-101 372.5 385 52.2
Sed0020704 Sechium edule HOM05D004436 ORTHO05D005179 4.4e-101 372.5 388 52.1
Solyc06g053330.4 Solanum lycopersicum HOM05D004436 ORTHO05D005179 5.8e-101 372.1 388 50.8
Sopen06g018390 Solanum pennellii HOM05D004436 ORTHO05D005179 5.8e-101 372.1 388 50.8
FAN05G5343 Fragaria x ananassa HOM05D004436 ORTHO05D005179 2.9e-100 369.8 390 50.5
FAN09G2135 Fragaria x ananassa HOM05D004436 ORTHO05D005179 2.9e-100 369.8 390 50.8
CAN.G540.4 Capsicum annuum HOM05D004436 ORTHO05D005179 6.4e-100 368.6 389 50.9
FAN02G3564 Fragaria x ananassa HOM05D004436 ORTHO05D005179 1.4e-99 367.5 390 50.3
Sc12g0010440 Simmondsia chinensis HOM05D004436 ORTHO05D005179 1.4e-99 367.5 388 52.3
FvH4_6g34180 Fragaria vesca HOM05D004436 ORTHO05D005179 2.4e-99 366.7 390 50.3
Hma1.2p1_0496F.1_g166100 Hydrangea macrophylla HOM05D004436 ORTHO05D005179 5.4e-99 365.5 403 49.9
CSS0033207 Camellia sinensis var. sinensis HOM05D004436 ORTHO05D005179 7.0e-99 365.2 382 52.1
Gorai.003G182300 Gossypium raimondii HOM05D004436 ORTHO05D005179 7.0e-99 365.2 398 49.7
Oeu044709.1 Olea europaea HOM05D004436 ORTHO05D005179 7.0e-99 365.2 386 50.5
Oeu047041.1 Olea europaea HOM05D004436 ORTHO05D005179 9.2e-99 364.8 377 51.7
COL.COLO4_17027 Corchorus olitorius HOM05D004436 ORTHO05D005179 2.7e-98 363.2 348 55.5
Gohir.A03G000500 Gossypium hirsutum HOM05D004436 ORTHO05D005179 6.0e-98 362.1 398 49.5
Dinv30366 Davidia involucrata HOM05D004436 ORTHO05D005179 7.8e-98 361.7 359 54.3
Sabra01G0155800 Salix brachista HOM05D004436 ORTHO05D005179 1.0e-97 361.3 427 48.9
Gohir.D03G171700 Gossypium hirsutum HOM05D004436 ORTHO05D005179 2.3e-97 360.1 398 49.2
Peaxi162Scf00943g00014 Petunia axillaris HOM05D004436 ORTHO05D005179 2.3e-97 360.1 386 50.3
MSTRG.22562 Avicennia marina HOM05D004436 ORTHO05D005179 3.9e-97 359.4 385 49.9
Thhalv10020760m.g Eutrema salsugineum HOM05D004436 ORTHO05D005179 1.1e-96 357.8 388 50.3
Peaxi162Scf00647g00219 Petunia axillaris HOM05D004436 ORTHO05D005179 1.1e-96 357.8 386 49.5
Sp3g12180 Schrenkiella parvula HOM05D004436 ORTHO05D005179 2.5e-96 356.7 382 48.7
Carub.0003s1351 Capsella rubella HOM05D004436 ORTHO05D005179 3.3e-96 356.3 390 46.9
Aa31LG8G1130 Aethionema arabicum HOM05D004436 ORTHO05D005179 5.6e-96 355.5 392 49.2
HanXRQChr10g0312341 Helianthus annuus HOM05D004436 ORTHO05D005179 6.2e-95 352.1 386 50.3
Lsat_1_v5_gn_5_135221 Lactuca sativa HOM05D004436 ORTHO05D005179 6.2e-95 352.1 384 50.8
Atru.chr1.3808 Acer truncatum HOM05D004436 ORTHO05D005179 8.0e-95 351.7 370 53.2
Nitab4.5_0012713g0010 Nicotiana tabacum HOM05D004436 ORTHO05D005179 8.0e-95 351.7 386 50.0
FAN14G2695 Fragaria x ananassa HOM05D004436 ORTHO05D005179 2.3e-94 350.1 426 46.2
SGA_v2.0_scaffold68G22895 Striga asiatica HOM05D004436 ORTHO05D005179 2.3e-94 350.1 391 47.3
FAN26G0630 Fragaria x ananassa HOM05D004436 ORTHO05D005179 5.2e-94 349.0 389 48.6
Hund20819 Selenicereus undatus HOM05D004436 ORTHO05D005179 4.4e-93 345.9 384 49.5
ECA234G4408 Erigeron canadensis HOM05D004436 ORTHO05D005179 2.2e-92 343.6 378 50.5
RcHm_v2.0_Chr2g0166351 Rosa chinensis HOM05D004436 ORTHO05D005179 3.7e-92 342.8 392 48.0
Lj6g0018808 Lotus japonicus HOM05D004436 ORTHO05D005179 1.9e-91 340.5 246 72.0
AL3G26120 Arabidopsis lyrata HOM05D004436 ORTHO05D005179 7.0e-91 338.6 390 47.2
Migut.D00948 Erythranthe guttata HOM05D004436 ORTHO05D005179 9.2e-91 338.2 400 47.5
Rhsim10G0150900 Rhododendron simsii HOM05D004436 ORTHO05D005179 2.1e-90 337.0 455 44.4
FvH4_6g47280 Fragaria vesca HOM05D004436 ORTHO05D005179 7.8e-90 335.1 400 47.5
QL05p009436 Quercus lobata HOM05D004436 ORTHO05D005179 7.8e-90 335.1 598 36.0
EL10Ac7g16380 Beta vulgaris HOM05D004436 ORTHO05D005179 3.0e-89 333.2 387 46.5
CARHR088750 Cardamine hirsuta HOM05D004436 ORTHO05D005179 1.5e-88 330.9 395 45.3
EL10Ac7g16378 Beta vulgaris HOM05D004436 ORTHO05D005179 1.6e-87 327.4 387 47.3
AT3G13940 Arabidopsis thaliana HOM05D004436 ORTHO05D005179 6.2e-87 325.5 390 46.4
AUR62009860 Chenopodium quinoa HOM05D004436 ORTHO05D005179 3.1e-86 323.2 386 44.6
Ah.07g197300 Amaranthus hybridus HOM05D004436 ORTHO05D005179 4.0e-86 322.8 386 44.6
Cc04_g01610 Coffea canephora HOM05D004436 ORTHO05D005179 2.2e-84 317.0 313 54.0
DCAR_026403 Daucus carota HOM05D004436 ORTHO05D005179 2.9e-84 316.6 386 45.6
BcaC09g48383 Brassica carinata HOM05D004436 ORTHO05D005179 3.2e-83 313.2 383 46.2
C01p50660 Brassica napus HOM05D004436 ORTHO05D005179 3.2e-83 313.2 383 46.2
BolC1t05015H Brassica oleracea HOM05D004436 ORTHO05D005179 3.2e-83 313.2 383 46.2
A01p39710 Brassica napus HOM05D004436 ORTHO05D005179 4.1e-83 312.8 383 46.5
BraA01t04010Z Brassica rapa HOM05D004436 ORTHO05D005179 4.1e-83 312.8 383 46.5
CDE07G0038 Ceratophyllum demersum HOM05D004436 ORTHO05D005179 7.1e-83 312.0 409 42.5
Aqoxy2G00706 Aquilegia oxysepala HOM05D004436 ORTHO05D005179 1.6e-82 310.8 393 45.5
BcaB04g20967 Brassica carinata HOM05D004436 ORTHO05D005179 7.8e-82 308.5 389 46.0
TPR.G16505 Trifolium pratense HOM05D004436 ORTHO05D005179 1.7e-81 307.4 216 69.0
Ca_27339_v3 Cicer arietinum L. HOM05D004436 ORTHO05D005179 2.3e-81 307.0 300 56.0
AUR62001510 Chenopodium quinoa HOM05D004436 ORTHO05D005179 2.5e-80 303.5 412 40.8
MD17G1172300 Malus domestica HOM05D004436 ORTHO05D005179 4.3e-80 302.8 308 51.0
unitig_26.g9010 Utricularia gibba HOM05D000572 ORTHO05D002399 1.1e-78 298.1 391 43.2
Actinidia21779 Actinidia chinensis HOM05D004436 ORTHO05D005179 5.8e-77 292.4 395 43.0
PSO724G1089 Papaver somniferum HOM05D004436 ORTHO05D005179 2.4e-75 287.0 392 42.6
FAN24G2018 Fragaria x ananassa HOM05D004436 ORTHO05D005179 4.2e-75 286.2 385 45.5
Peaxi162Scf00060g02815 Petunia axillaris HOM05D004436 ORTHO05D005179 5.4e-75 285.8 389 44.0
PSO135G0558 Papaver somniferum HOM05D004436 ORTHO05D005179 1.2e-74 284.6 394 42.4
ATR0762G049 Amborella trichopoda HOM05D004436 ORTHO05D005179 4.4e-69 266.2 418 38.5
FvH4_2g14600 Fragaria vesca HOM05D004436 ORTHO05D005179 1.3e-68 264.6 301 49.5
Nitab4.5_0004287g0020 Nicotiana tabacum HOM05D004436 ORTHO05D005179 4.9e-68 262.7 383 42.0
HPP92_009424 Vanilla planifolia HOM05D004436 ORTHO05D005179 6.4e-68 262.3 395 41.8
Nn6g35749 Nelumbo nucifera HOM05D004436 ORTHO05D005179 6.2e-63 245.7 389 39.6
Zm00001eb166800 Zea mays HOM05D004436 ORTHO05D005179 8.4e-60 235.3 400 38.5
Os11g0615100 Oryza sativa ssp. japonica HOM05D004436 ORTHO05D005179 9.0e-54 215.3 392 39.3
Carub.0003s3547 Capsella rubella HOM05D004436 ORTHO05D005179 2.9e-52 210.3 355 40.3
THA.LOC104822769 Tarenaya hassleriana HOM05D004436 ORTHO05D005179 1.3e-49 201.4 230 47.4
Ah.08g216510 Amaranthus hybridus HOM05D004436 ORTHO05D005179 1.5e-45 188.0 308 36.7
Pp3c8_24340 Physcomitrium patens HOM05D004436 ORTHO05D005179 3.8e-44 183.3 425 32.9
FAN14G5104 Fragaria x ananassa HOM05D002326 ORTHO05D005179 8.4e-44 182.2 229 44.1
DCAR_023423 Daucus carota HOM05D004436 ORTHO05D005179 2.5e-43 180.6 232 44.0
FAN27G1625 Fragaria x ananassa HOM05D004436 ORTHO05D005179 4.2e-43 179.9 366 35.5
AagrBONN_evm.TU.Sc2ySwM_368.2707 Anthoceros agrestis HOM05D004436 ORTHO05D005179 2.7e-42 177.2 437 31.6
Aqoxy7G00272 Aquilegia oxysepala HOM05D004436 ORTHO05D005179 6.5e-36 156.0 207 41.5
SEGI_22335 Sequoiadendron giganteum HOM05D004436 ORTHO05D005179 5.5e-35 152.9 299 37.8
SEGI_28110 Sequoiadendron giganteum HOM05D004436 ORTHO05D005179 9.7e-32 142.1 323 33.4
FAN20G3048 Fragaria x ananassa HOM05D004436 ORTHO05D005179 6.3e-31 139.4 242 37.2
Aqoxy2G02914 Aquilegia oxysepala HOM05D004436 ORTHO05D005179 2.4e-30 137.5 138 54.3
FAN09G3702 Fragaria x ananassa HOM05D002326 ORTHO05D005179 1.2e-29 135.2 398 32.2
FAN02G4131 Fragaria x ananassa HOM05D002326 ORTHO05D005179 1.0e-28 132.1 399 31.6
FAN15G1241 Fragaria x ananassa HOM05D004436 ORTHO05D005179 1.3e-28 131.7 388 29.4
Haze_06394 Corylus avellana HOM05D004436 ORTHO05D005179 6.1e-26 122.9 185 45.9
TPR.G16496 Trifolium pratense HOM05D004436 ORTHO05D005179 3.0e-25 120.6 144 50.0
Mapoly0063s0055 Marchantia polymorpha HOM05D004436 ORTHO05D005179 6.7e-25 119.4 339 27.7
Oeu004353.1 Olea europaea HOM05D004436 ORTHO05D005179 8.8e-25 119.0 106 52.8
PGSC0003DMG400002436 Solanum tuberosum HOM05D004436 ORTHO05D005179 1.7e-23 114.8 147 46.3
AL1G64440 Arabidopsis lyrata HOM05D004436 ORTHO05D005179 5.9e-21 106.3 158 41.8
THA.LOC104822775 Tarenaya hassleriana HOM05D004436 ORTHO05D005179 5.9e-21 106.3 122 45.9
CBR_g45967 Chara braunii HOM05D004436 ORTHO05D005179 7.7e-21 105.9 427 25.1
ATR0185G001 Amborella trichopoda HOM05D004436 ORTHO05D005179 2.9e-20 104.0 137 40.9
AUR62000997 Chenopodium quinoa HOM05D004436 ORTHO05D005179 5.0e-20 103.2 175 36.6
Dinv21190 Davidia involucrata HOM05D004436 ORTHO05D005179 2.7e-18 97.4 103 49.5
Aqoxy2G02915 Aquilegia oxysepala HOM05D004436 ORTHO05D005179 5.2e-17 93.2 126 41.3
Psat6g077080 Pisum sativum HOM05D001891 ORTHO05D005832 2.6e-16 90.9 122 45.9
Psat6g077120 Pisum sativum HOM05D001891 ORTHO05D005832 2.6e-16 90.9 122 45.9
SEGI_36774 Sequoiadendron giganteum HOM05D004436 ORTHO05D005179 1.2e-13 82.0 107 41.1
Peaxi162Scf01131g00007 Petunia axillaris HOM05D004436 ORTHO05D005179 6.5e-12 76.3 166 30.7
Ca_02098_v3 Cicer arietinum L. HOM05D000001 ORTHO05D000003 1.1e-11 75.5 172 33.1
SMO144G0124 Selaginella moellendorffii HOM05D004436 ORTHO05D005179 9.4e-11 72.4 92 41.3
ATR0589G117 Amborella trichopoda HOM05D004436 ORTHO05D005179 2.2e-07 61.2 87 41.4
PSO017G0055 Papaver somniferum HOM05D004436 ORTHO05D005179 4.8e-07 60.1 120 34.2
TPR.G26235 Trifolium pratense HOM05D001104 ORTHO05D006535 2.4e-06 57.8 93 39.8


User provided reference genes

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