Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.15G153100 Glycine max HOM05D006081 ORTHO05D007628 2.3e-105 385.6 196 100.0
Glyma.09G045900 Glycine max HOM05D006081 ORTHO05D007628 4.2e-91 338.2 196 88.8
Phvul.009G246800 Phaseolus vulgaris HOM05D006081 ORTHO05D007628 9.5e-91 337.0 196 87.8
VMungo1309G0529 Vigna mungo HOM05D006081 ORTHO05D007628 5.2e-89 331.3 196 87.2
Lj6g0000146 Lotus japonicus HOM05D006081 ORTHO05D007628 2.0e-80 302.8 196 79.1
Psat1g153280 Pisum sativum HOM05D006081 ORTHO05D007628 3.5e-77 292.0 196 76.5
Ca_01966_v3 Cicer arietinum L. HOM05D006081 ORTHO05D007628 6.0e-77 291.2 196 78.1
Medtr2g436940 Medicago truncatula HOM05D006081 ORTHO05D007628 1.9e-75 286.2 199 76.9
Lalb_Chr18g0051761 Lupinus albus HOM05D006081 ORTHO05D007628 3.4e-72 275.4 199 73.9
arahy.Tifrunner.gnm1.ann1.EZB5Q6 Arachis hypogaea HOM05D006081 ORTHO05D007628 1.4e-65 253.4 196 67.9
Lalb_Chr20g0114491 Lupinus albus HOM05D006081 ORTHO05D007628 2.6e-64 249.2 197 68.5
arahy.Tifrunner.gnm1.ann1.TA2ZSY Arachis hypogaea HOM05D006081 ORTHO05D007628 9.9e-64 247.3 196 66.8
Cfa015373 Carpinus fangiana HOM05D006081 ORTHO05D007628 2.2e-63 246.1 192 66.1
PGR031G1107 Punica granatum HOM05D006081 ORTHO05D007628 6.0e-61 238.0 192 64.1
CiPaw.01G149700 Carya illinoinensis HOM05D006081 ORTHO05D007628 3.0e-60 235.7 194 64.9
Manes.15G013500 Manihot esculenta HOM05D006081 ORTHO05D007628 1.9e-59 233.0 192 64.1
CiPaw.02G083900 Carya illinoinensis HOM05D006081 ORTHO05D007628 9.5e-59 230.7 194 62.4
Atru.chr4.2827 Acer truncatum HOM05D006081 ORTHO05D007628 1.6e-58 229.9 190 65.8
Manes.03G194000 Manihot esculenta HOM05D006081 ORTHO05D007628 6.2e-58 228.0 193 62.7
Prupe.1G138200 Prunus persica HOM05D006081 ORTHO05D007628 6.2e-58 228.0 200 60.5
TWI53G0242 Tripterygium wilfordii HOM05D006081 ORTHO05D007628 1.4e-57 226.9 191 62.3
Cpa.g.sc16.161 Carica papaya HOM05D006081 ORTHO05D007628 1.8e-57 226.5 188 62.8
Eucgr.H03897 Eucalyptus grandis HOM05D006081 ORTHO05D007628 3.1e-57 225.7 188 61.7
QL06p008580 Quercus lobata HOM05D006081 ORTHO05D007628 4.4e-56 221.9 192 63.5
CSS0030149 Camellia sinensis var. sinensis HOM05D006081 ORTHO05D007628 5.8e-56 221.5 191 63.9
CsaV3_6G017270 Cucumis sativus L. HOM05D006081 ORTHO05D007628 7.6e-56 221.1 194 61.9
TPR.G26808 Trifolium pratense HOM05D006081 ORTHO05D007628 7.6e-56 221.1 138 80.4
CANSAT78G1428 Cannabis sativa HOM05D006081 ORTHO05D007628 2.9e-55 219.2 199 61.8
vmacro08134 Vaccinium macrocarpon HOM05D006081 ORTHO05D007628 2.9e-55 219.2 192 62.5
ClCG06G005230 Citrullus lanatus HOM05D006081 ORTHO05D007628 6.4e-55 218.0 197 59.4
Dinv29771 Davidia involucrata HOM05D006081 ORTHO05D007628 8.4e-55 217.6 193 63.2
Rhsim04G0220300 Rhododendron simsii HOM05D006081 ORTHO05D007628 8.4e-55 217.6 194 62.9
MELO3C021343.2 Cucumis melo HOM05D006081 ORTHO05D007628 5.4e-54 214.9 192 61.5
RcHm_v2.0_Chr4g0421971 Rosa chinensis HOM05D006081 ORTHO05D007628 7.1e-54 214.5 192 59.4
TAR636G3617 Trochodendron aralioides HOM05D006081 ORTHO05D007628 7.1e-54 214.5 194 60.3
Potri.008G210100 Populus trichocarpa HOM05D006081 ORTHO05D007628 1.2e-53 213.8 191 59.7
GSVIVG01017744001 Vitis vinifera HOM05D006081 ORTHO05D007628 2.7e-53 212.6 191 58.6
Thecc.04G283000 Theobroma cacao HOM05D006081 ORTHO05D007628 4.6e-53 211.8 190 60.0
Actinidia40266 Actinidia chinensis HOM05D006081 ORTHO05D007628 6.0e-53 211.5 190 62.1
Sed0014998 Sechium edule HOM05D006081 ORTHO05D007628 2.3e-52 209.5 193 60.1
FvH4_4g17860 Fragaria vesca HOM05D006081 ORTHO05D007628 3.0e-52 209.1 195 56.9
Sabra08G0154300 Salix brachista HOM05D006081 ORTHO05D007628 3.0e-52 209.1 191 59.2
FAN07G2255 Fragaria x ananassa HOM05D006081 ORTHO05D007628 5.1e-52 208.4 192 57.8
Cc00_g10580 Coffea canephora HOM05D006081 ORTHO05D007628 1.5e-51 206.8 191 56.5
FAN12G2613 Fragaria x ananassa HOM05D006081 ORTHO05D007628 1.5e-51 206.8 195 56.4
HanXRQChr03g0079991 Helianthus annuus HOM05D006081 ORTHO05D007628 3.3e-51 205.7 196 59.7
FAN17G1774 Fragaria x ananassa HOM05D006081 ORTHO05D007628 5.6e-51 204.9 192 56.8
MD16G1171400 Malus domestica HOM05D006081 ORTHO05D007628 5.6e-51 204.9 194 56.7
Duzib151G0152 Durio zibethinus HOM05D006081 ORTHO05D007628 1.2e-50 203.8 190 55.8
Ciclev10005978m.g Citrus clementina HOM05D006081 ORTHO05D007628 2.1e-50 203.0 191 58.1
MBI19_g30830_MAGBIO Magnolia biondii HOM05D006081 ORTHO05D007628 3.6e-50 202.2 196 53.6
Gohir.D02G054100 Gossypium hirsutum HOM05D006081 ORTHO05D007628 8.1e-50 201.1 188 54.8
Gorai.005G059600 Gossypium raimondii HOM05D006081 ORTHO05D007628 8.1e-50 201.1 188 54.8
Nitab4.5_0003749g0060 Nicotiana tabacum HOM05D006081 ORTHO05D007628 1.1e-49 200.7 191 58.1
Nitab4.5_0003972g0010 Nicotiana tabacum HOM05D006081 ORTHO05D007628 1.1e-49 200.7 191 58.6
MSTRG.21799 Avicennia marina HOM05D006081 ORTHO05D007628 2.4e-49 199.5 193 56.0
SGA_v2.0_scaffold55G19699 Striga asiatica HOM05D006081 ORTHO05D007628 2.4e-49 199.5 199 54.8
Gohir.A02G048800 Gossypium hirsutum HOM05D006081 ORTHO05D007628 3.1e-49 199.1 188 54.8
Aa31LG8G8110 Aethionema arabicum HOM05D006081 ORTHO05D007628 6.9e-49 198.0 192 57.3
TAR365G0221 Trochodendron aralioides HOM05D006081 ORTHO05D007628 6.9e-49 198.0 165 62.4
Oeu027733.1 Olea europaea HOM05D006081 ORTHO05D007628 1.5e-48 196.8 193 57.0
Peaxi162Scf00534g00212 Petunia axillaris HOM05D006081 ORTHO05D007628 2.0e-48 196.4 191 55.0
Lj6A673G88 Lonicera japonica HOM05D006081 ORTHO05D007628 5.8e-48 194.9 135 68.1
PSO210G2816 Papaver somniferum HOM05D006081 ORTHO05D007628 7.6e-48 194.5 191 56.5
Thhalv10021583m.g Eutrema salsugineum HOM05D006081 ORTHO05D007628 9.9e-48 194.1 192 55.7
Lsat_1_v5_gn_5_49301 Lactuca sativa HOM05D006081 ORTHO05D007628 1.7e-47 193.4 190 55.3
PGSC0003DMG400022662 Solanum tuberosum HOM05D006081 ORTHO05D007628 1.7e-47 193.4 193 54.9
Solyc01g067080.3 Solanum lycopersicum HOM05D006081 ORTHO05D007628 2.2e-47 193.0 193 51.8
SalBow5G1281 Salvia bowleyana HOM05D006081 ORTHO05D007628 3.8e-47 192.2 193 54.4
Sopen01g028790 Solanum pennellii HOM05D006081 ORTHO05D007628 3.8e-47 192.2 193 51.8
PSO170G3586 Papaver somniferum HOM05D006081 ORTHO05D007628 4.9e-47 191.8 191 57.6
Migut.N00097 Erythranthe guttata HOM05D006081 ORTHO05D007628 8.4e-47 191.0 193 53.4
Sp3g19430 Schrenkiella parvula HOM05D006081 ORTHO05D007628 1.1e-46 190.7 192 52.6
Sc13g0003510 Simmondsia chinensis HOM05D006081 ORTHO05D007628 1.1e-46 190.7 202 51.5
ECA240G0281 Erigeron canadensis HOM05D006081 ORTHO05D007628 7.1e-46 188.0 193 56.0
THA.LOC104820251 Tarenaya hassleriana HOM05D006081 ORTHO05D007628 9.3e-46 187.6 190 52.6
BcaC01g03506 Brassica carinata HOM05D006081 ORTHO05D007628 1.6e-45 186.8 193 52.8
BolC3t17454H Brassica oleracea HOM05D006081 ORTHO05D007628 1.6e-45 186.8 193 52.8
CARHR097370 Cardamine hirsuta HOM05D006081 ORTHO05D007628 3.5e-45 185.7 194 53.6
C03p51690 Brassica napus HOM05D006081 ORTHO05D007628 1.0e-44 184.1 193 51.8
Carub.0003s2143 Capsella rubella HOM05D006081 ORTHO05D007628 1.7e-44 183.3 194 51.5
AL3G35480 Arabidopsis lyrata HOM05D006081 ORTHO05D007628 2.3e-44 183.0 193 53.4
AT3G21400 Arabidopsis thaliana HOM05D006081 ORTHO05D007628 3.0e-44 182.6 192 51.6
BraA03t13376Z Brassica rapa HOM05D006081 ORTHO05D007628 3.0e-44 182.6 192 51.0
A03p42230 Brassica napus HOM05D006081 ORTHO05D007628 3.9e-44 182.2 192 51.0
DCAR_030534 Daucus carota HOM05D006081 ORTHO05D007628 2.5e-43 179.5 189 50.8
BcaB04g19166 Brassica carinata HOM05D006081 ORTHO05D007628 5.6e-43 178.3 194 50.5
Oeu023291.2 Olea europaea HOM05D006081 ORTHO05D007628 5.6e-43 178.3 232 47.4
unitig_26.g10542 Utricularia gibba HOM05D006081 ORTHO05D007628 7.3e-43 177.9 197 48.2
Aqoxy2G03026 Aquilegia oxysepala HOM05D006081 ORTHO05D007628 5.3e-41 171.8 138 63.0
FAN12G2474 Fragaria x ananassa HOM05D006081 ORTHO05D007628 6.9e-41 171.4 115 69.6
CSS0018730 Camellia sinensis var. sinensis HOM05D006081 ORTHO05D007628 9.0e-41 171.0 115 71.3
EL10Ac3g06586 Beta vulgaris HOM05D006081 ORTHO05D007628 7.6e-40 167.9 194 48.5
CDE02G2676 Ceratophyllum demersum HOM05D006081 ORTHO05D000739 3.8e-39 165.6 198 48.0
AUR62043167 Chenopodium quinoa HOM05D006081 ORTHO05D007628 4.9e-39 165.2 133 57.1
BcaB06g26235 Brassica carinata HOM05D006081 ORTHO05D007628 2.4e-38 162.9 192 49.5
BcaC05g28170 Brassica carinata HOM05D006081 ORTHO05D007628 5.4e-38 161.8 196 46.4
C05p42070 Brassica napus HOM05D006081 ORTHO05D007628 5.4e-38 161.8 196 46.4
BolC5t32937H Brassica oleracea HOM05D006081 ORTHO05D007628 5.4e-38 161.8 196 46.4
CDE09G1305 Ceratophyllum demersum HOM05D006081 ORTHO05D007628 7.9e-37 157.9 191 47.1
CAN.G556.12 Capsicum annuum HOM05D006081 ORTHO05D007628 5.1e-36 155.2 110 66.4
AUR62036825 Chenopodium quinoa HOM05D006081 ORTHO05D007628 1.9e-35 153.3 135 54.8
ATR0706G092 Amborella trichopoda HOM05D006081 ORTHO05D007628 2.8e-34 149.4 129 59.7
A05p27230 Brassica napus HOM05D006081 ORTHO05D007628 2.9e-31 139.4 177 45.2
BraA05t21612Z Brassica rapa HOM05D006081 ORTHO05D007628 3.8e-31 139.0 175 45.7
TAR365G0700 Trochodendron aralioides HOM05D006081 ORTHO05D007628 1.1e-30 137.5 94 68.1
SEGI_25455 Sequoiadendron giganteum HOM05D006081 ORTHO05D007628 1.9e-30 136.7 185 42.2
Os12g0540700 Oryza sativa ssp. japonica HOM05D006081 ORTHO05D007628 1.6e-29 133.7 187 41.2
MBI19_g12810_MAGBIO Magnolia biondii HOM05D006081 ORTHO05D007628 6.0e-29 131.7 100 58.0
Zm00001eb410420 Zea mays HOM05D006081 ORTHO05D007628 7.9e-29 131.3 198 39.4
Haze_01224 Corylus avellana HOM05D006081 ORTHO05D007628 1.1e-27 127.5 83 71.1
Actinidia01470 Actinidia chinensis HOM05D006081 ORTHO05D007628 7.4e-27 124.8 193 43.0
HPP92_001321 Vanilla planifolia HOM05D006081 ORTHO05D007628 3.1e-25 119.4 179 41.3
AUR62038616 Chenopodium quinoa HOM05D006081 ORTHO05D007628 5.8e-24 115.2 92 56.5
CSS0011440 Camellia sinensis var. sinensis HOM05D006081 ORTHO05D007628 1.1e-22 110.9 110 55.5
MD13G1169900 Malus domestica HOM05D006081 ORTHO05D007628 1.1e-22 110.9 130 53.1
Potri.010G024000 Populus trichocarpa HOM05D006081 ORTHO05D007628 7.4e-19 98.2 64 71.9
Haze_01225 Corylus avellana HOM05D006081 ORTHO05D007628 2.2e-18 96.7 100 58.0
Pp3c1_29830 Physcomitrium patens HOM05D006081 ORTHO05D007628 8.2e-18 94.7 164 36.6
Mapoly0041s0011 Marchantia polymorpha HOM05D006081 ORTHO05D007628 3.4e-16 89.4 139 38.8
AagrBONN_evm.TU.Sc2ySwM_368.2309 Anthoceros agrestis HOM05D006081 ORTHO05D007628 1.6e-13 80.5 109 37.6
Nn5g30060 Nelumbo nucifera HOM05D006081 ORTHO05D007628 1.8e-12 77.0 101 46.5
CBR_g29894 Chara braunii HOM05D008095 ORTHO05D010826 1.5e-11 73.9 115 33.9
FAN22G0279 Fragaria x ananassa HOM05D006081 ORTHO05D007628 2.0e-11 73.6 98 48.0
BolC7t43135H Brassica oleracea HOM05D006081 ORTHO05D033520 1.0e-07 61.2 54 53.7
arahy.Tifrunner.gnm1.ann1.LB6QPX Arachis hypogaea HOM05D006081 ORTHO05D007628 6.5e-07 58.5 43 65.1
Hma1.2p1_1676F.1_g297010 Hydrangea macrophylla HOM05D006081 ORTHO05D007628 1.9e-06 57.0 38 71.1


User provided reference genes

Program Settings