Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.15G147800 Glycine max HOM05D004153 ORTHO05D004678 1.4e-90 336.3 168 100.0
Glyma.09G044900 Glycine max HOM05D004153 ORTHO05D004678 2.8e-83 312.0 168 91.7
Phvul.009G248000 Phaseolus vulgaris HOM05D004153 ORTHO05D004678 1.9e-76 289.3 168 85.7
TPR.G13834 Trifolium pratense HOM05D004153 ORTHO05D004678 5.8e-73 277.7 168 78.6
VMungo1309G0390 Vigna mungo HOM05D004153 ORTHO05D004678 2.9e-72 275.4 168 81.0
Lj6g0000547 Lotus japonicus HOM05D004153 ORTHO05D004678 3.9e-69 265.0 170 77.1
Psat1g153880 Pisum sativum HOM05D004153 ORTHO05D004678 2.5e-68 262.3 168 76.2
Medtr2g436790 Medicago truncatula HOM05D004153 ORTHO05D004678 3.5e-62 241.9 168 70.8
Lalb_Chr18g0051691 Lupinus albus HOM05D004153 ORTHO05D004678 8.7e-61 237.3 165 71.5
Haze_01203 Corylus avellana HOM05D004153 ORTHO05D004678 4.8e-51 204.9 170 62.4
Ciclev10007035m.g Citrus clementina HOM05D004153 ORTHO05D004678 8.2e-51 204.1 182 56.0
Atru.chr4.2837 Acer truncatum HOM05D004153 ORTHO05D004678 1.1e-50 203.8 177 57.1
CANSAT78G0904 Cannabis sativa HOM05D004153 ORTHO05D004678 1.8e-50 203.0 161 60.2
TWI53G1241 Tripterygium wilfordii HOM05D004153 ORTHO05D004678 1.8e-50 203.0 159 62.3
Ca_01937_v3 Cicer arietinum L. HOM05D000639 ORTHO05D004019 3.4e-49 198.7 121 76.9
Duzib052G0234 Durio zibethinus HOM05D004153 ORTHO05D004678 5.9e-49 198.0 166 57.2
RcHm_v2.0_Chr4g0422241 Rosa chinensis HOM05D004153 ORTHO05D004678 1.3e-48 196.8 169 56.8
Thecc.04G284700 Theobroma cacao HOM05D004153 ORTHO05D004678 1.4e-45 186.8 161 54.7
Gohir.D10G170400 Gossypium hirsutum HOM05D004153 ORTHO05D004678 2.3e-45 186.0 165 53.3
Gohir.A10G164100 Gossypium hirsutum HOM05D004153 ORTHO05D004678 3.0e-45 185.7 165 53.3
FAN07G0961 Fragaria x ananassa HOM05D004153 ORTHO05D004678 5.1e-45 184.9 146 62.3
Gorai.011G190200 Gossypium raimondii HOM05D004153 ORTHO05D004678 8.8e-45 184.1 165 52.7
Lj3P816T18 Lonicera japonica HOM05D004153 ORTHO05D004678 2.0e-44 183.0 155 56.8
Sed0018454 Sechium edule HOM05D004153 ORTHO05D004678 3.3e-44 182.2 155 54.8
TWI73G1192 Tripterygium wilfordii HOM05D004153 ORTHO05D004678 3.3e-44 182.2 155 58.7
MELO3C006663.2 Cucumis melo HOM05D004153 ORTHO05D004678 2.2e-43 179.5 161 50.9
CsaV3_3G014620 Cucumis sativus L. HOM05D004153 ORTHO05D004678 2.2e-43 179.5 156 52.6
Prupe.1G136800 Prunus persica HOM05D004153 ORTHO05D004678 4.1e-42 175.3 145 57.9
Eucgr.B01312 Eucalyptus grandis HOM05D004153 ORTHO05D004678 1.3e-40 170.2 163 48.5
Lj3P819T20 Lonicera japonica HOM05D004153 ORTHO05D004678 1.7e-40 169.9 142 57.0
PGR031G1230 Punica granatum HOM05D004153 ORTHO05D004678 3.2e-39 165.6 159 50.3
Aqoxy2G02983 Aquilegia oxysepala HOM05D004153 ORTHO05D004678 5.5e-39 164.9 159 51.6
Duzib138G0244 Durio zibethinus HOM05D004153 ORTHO05D004678 2.1e-38 162.9 161 49.7
EL10Ac3g06596 Beta vulgaris HOM05D004153 ORTHO05D004678 2.7e-38 162.5 167 47.3
COL.COLO4_23373 Corchorus olitorius HOM05D004153 ORTHO05D004678 2.7e-38 162.5 161 46.6
Manes.04G056100 Manihot esculenta HOM05D004153 ORTHO05D004678 3.0e-37 159.1 161 45.3
Potri.010G025200 Populus trichocarpa HOM05D004153 ORTHO05D004678 3.0e-37 159.1 159 50.3
TWI23G0022 Tripterygium wilfordii HOM05D004153 ORTHO05D004678 2.6e-36 156.0 166 47.0
Sed0010104 Sechium edule HOM05D004153 ORTHO05D004678 5.7e-36 154.8 162 45.7
Gohir.D12G011200 Gossypium hirsutum HOM05D004153 ORTHO05D004678 7.5e-36 154.5 161 47.8
Gorai.008G011200 Gossypium raimondii HOM05D004153 ORTHO05D004678 7.5e-36 154.5 161 47.8
Potri.002G206100 Populus trichocarpa HOM05D004153 ORTHO05D004678 1.3e-35 153.7 165 44.2
Potri.014G131400 Populus trichocarpa HOM05D004153 ORTHO05D004678 1.7e-35 153.3 168 43.5
Atru.chr5.1180 Acer truncatum HOM05D004153 ORTHO05D004678 2.2e-35 152.9 159 46.5
Gohir.A12G010800 Gossypium hirsutum HOM05D004153 ORTHO05D004678 6.3e-35 151.4 161 47.8
Manes.05G063900 Manihot esculenta HOM05D004153 ORTHO05D004678 6.3e-35 151.4 161 44.7
Manes.03G195100 Manihot esculenta HOM05D004153 ORTHO05D004678 1.1e-34 150.6 146 52.7
QL12p027168 Quercus lobata HOM05D004153 ORTHO05D004678 3.1e-34 149.1 160 46.2
Sabra02G0153200 Salix brachista HOM05D004153 ORTHO05D004678 4.1e-34 148.7 165 42.4
PSO675G8366 Papaver somniferum HOM05D004153 ORTHO05D004678 7.0e-34 147.9 159 44.0
Haze_04898 Corylus avellana HOM05D004153 ORTHO05D004678 9.1e-34 147.5 155 49.0
Nitab4.5_0000619g0070 Nicotiana tabacum HOM05D004153 ORTHO05D004678 1.2e-33 147.1 158 46.2
Nitab4.5_0003901g0020 Nicotiana tabacum HOM05D004153 ORTHO05D004678 1.2e-33 147.1 158 46.2
PSO017G2667 Papaver somniferum HOM05D004153 ORTHO05D004678 1.2e-33 147.1 159 44.0
CAN.G339.31 Capsicum annuum HOM05D004153 ORTHO05D004678 1.6e-33 146.7 157 46.5
TAR365G1014 Trochodendron aralioides HOM05D004153 ORTHO05D004678 1.6e-33 146.7 141 48.9
Peaxi162Scf00067g00254 Petunia axillaris HOM05D004153 ORTHO05D004678 2.7e-33 146.0 158 47.5
Solyc09g074910.1 Solanum lycopersicum HOM05D004153 ORTHO05D004678 5.9e-33 144.8 162 44.4
Sopen09g029730 Solanum pennellii HOM05D004153 ORTHO05D004678 5.9e-33 144.8 162 44.4
Lj1C0T8 Lonicera japonica HOM05D004153 ORTHO05D004678 7.7e-33 144.4 157 46.5
Prupe.8G258500 Prunus persica HOM05D004153 ORTHO05D004678 1.0e-32 144.1 159 44.7
CiPaw.07G106600 Carya illinoinensis HOM05D004153 ORTHO05D004678 3.8e-32 142.1 154 46.8
Hma1.2p1_0209F.1_g088580 Hydrangea macrophylla HOM05D004153 ORTHO05D004678 3.8e-32 142.1 157 43.3
Sc13g0003480 Simmondsia chinensis HOM05D004153 ORTHO05D004678 3.8e-32 142.1 158 46.2
MD03G1285300 Malus domestica HOM05D004153 ORTHO05D004678 5.0e-32 141.7 159 45.9
Migut.D00197 Erythranthe guttata HOM05D004153 ORTHO05D004678 1.5e-31 140.2 156 44.9
PGSC0003DMG400035200 Solanum tuberosum HOM05D004153 ORTHO05D004678 1.5e-31 140.2 151 45.7
RcHm_v2.0_Chr6g0293581 Rosa chinensis HOM05D004153 ORTHO05D004678 2.5e-31 139.4 161 46.0
THA.LOC104802169 Tarenaya hassleriana HOM05D004153 ORTHO05D004678 2.5e-31 139.4 150 46.7
Cfa005949 Carpinus fangiana HOM05D004153 ORTHO05D004678 7.2e-31 137.9 132 49.2
Cc01_g20660 Coffea canephora HOM05D004153 ORTHO05D004678 7.2e-31 137.9 160 45.0
FAN15G0276 Fragaria x ananassa HOM05D004153 ORTHO05D004678 7.2e-31 137.9 161 42.9
Rhsim04G0221600 Rhododendron simsii HOM05D004153 ORTHO05D004678 7.2e-31 137.9 155 49.0
CANSAT01G1893 Cannabis sativa HOM05D004153 ORTHO05D004678 1.6e-30 136.7 162 43.8
SalBow3G0249 Salvia bowleyana HOM05D004153 ORTHO05D004678 3.6e-30 135.6 157 41.4
FAN15G2246 Fragaria x ananassa HOM05D000802 ORTHO05D001074 4.7e-30 135.2 159 44.0
Oeu030970.1 Olea europaea HOM05D004153 ORTHO05D004678 6.1e-30 134.8 157 42.0
Glyma.03G213300 Glycine max HOM05D004153 ORTHO05D004678 1.4e-29 133.7 155 43.9
Nn4g25841 Nelumbo nucifera HOM05D004153 ORTHO05D004678 2.3e-29 132.9 160 42.5
DCAR_002817 Daucus carota HOM05D004153 ORTHO05D004678 4.0e-29 132.1 158 42.4
Lsat_1_v5_gn_5_190540 Lactuca sativa HOM05D004153 ORTHO05D004678 4.0e-29 132.1 157 45.9
FvH4_2g25400 Fragaria vesca HOM05D004153 ORTHO05D004678 5.2e-29 131.7 161 44.1
FAN24G2766 Fragaria x ananassa HOM05D004153 ORTHO05D004678 5.2e-29 131.7 161 44.1
Lj1g0005892 Lotus japonicus HOM05D004153 ORTHO05D004678 5.2e-29 131.7 164 42.1
unitig_0.g1178 Utricularia gibba HOM05D004153 ORTHO05D004678 5.2e-29 131.7 157 41.4
Medtr7g108650 Medicago truncatula HOM05D004153 ORTHO05D004678 6.8e-29 131.3 167 43.1
Phvul.001G205900 Phaseolus vulgaris HOM05D004153 ORTHO05D004678 8.8e-29 131.0 160 42.5
Thecc.01G297300 Theobroma cacao HOM05D004153 ORTHO05D004678 8.8e-29 131.0 161 41.6
FAN27G1399 Fragaria x ananassa HOM05D004153 ORTHO05D004678 2.6e-28 129.4 156 42.9
Nn5g27910 Nelumbo nucifera HOM05D004153 ORTHO05D004678 2.6e-28 129.4 157 39.5
AUR62033157 Chenopodium quinoa HOM05D004153 ORTHO05D004678 3.4e-28 129.0 156 39.1
AUR62033169 Chenopodium quinoa HOM05D004153 ORTHO05D004678 3.4e-28 129.0 156 39.1
FAN20G2301 Fragaria x ananassa HOM05D004153 ORTHO05D004678 4.4e-28 128.6 161 43.5
Ciclev10022120m.g Citrus clementina HOM05D004153 ORTHO05D004678 5.7e-28 128.3 160 41.9
Psat3g022920 Pisum sativum HOM05D004153 ORTHO05D004678 9.8e-28 127.5 167 42.5
EL10Ac6g15659 Beta vulgaris HOM05D004153 ORTHO05D004678 2.2e-27 126.3 154 38.3
VMungo1383G3271 Vigna mungo HOM05D004153 ORTHO05D004678 2.2e-27 126.3 160 41.2
Ah.08g213200 Amaranthus hybridus HOM05D004153 ORTHO05D004678 6.3e-27 124.8 152 40.8
Lalb_Chr15g0078571 Lupinus albus HOM05D004153 ORTHO05D004678 8.3e-27 124.4 166 39.8
PGR119G1654 Punica granatum HOM05D004153 ORTHO05D004678 8.3e-27 124.4 156 41.7
PGR119G2063 Punica granatum HOM05D004153 ORTHO05D004678 8.3e-27 124.4 156 41.7
Lalb_Chr18g0047121 Lupinus albus HOM05D004153 ORTHO05D004678 1.8e-26 123.2 174 39.1
HanXRQChr01g0001291 Helianthus annuus HOM05D004153 ORTHO05D004678 2.4e-26 122.9 142 47.2
MBI18_g21824_MAGBIO Magnolia biondii HOM05D004153 ORTHO05D004678 3.1e-26 122.5 156 44.2
CSS0027100 Camellia sinensis var. sinensis HOM05D004153 ORTHO05D004678 4.1e-26 122.1 157 38.9
Carub.0004s3048 Capsella rubella HOM05D004153 ORTHO05D004678 5.4e-26 121.7 157 38.9
arahy.Tifrunner.gnm1.ann1.3INE6D Arachis hypogaea HOM05D004153 ORTHO05D004678 7.0e-26 121.3 150 42.0
HanXRQChr10g0284631 Helianthus annuus HOM05D004153 ORTHO05D004678 7.0e-26 121.3 152 39.5
SGA_v2.0_scaffold2G01404 Striga asiatica HOM05D004153 ORTHO05D004678 9.1e-26 120.9 150 39.3
Cpa.g.sc9.210 Carica papaya HOM05D004153 ORTHO05D004678 2.0e-25 119.8 157 38.2
AT2G47770 Arabidopsis thaliana HOM05D004153 ORTHO05D004678 4.5e-25 118.6 157 38.2
Aa31LG1G29110 Aethionema arabicum HOM05D004153 ORTHO05D004678 7.7e-25 117.9 160 38.8
AL4G47340 Arabidopsis lyrata HOM05D004153 ORTHO05D004678 7.7e-25 117.9 157 38.9
AUR62008617 Chenopodium quinoa HOM05D004153 ORTHO05D004678 1.3e-24 117.1 156 37.8
Lsat_1_v5_gn_9_1141 Lactuca sativa HOM05D004153 ORTHO05D004678 1.7e-24 116.7 153 39.2
CARHR143140 Cardamine hirsuta HOM05D004153 ORTHO05D004678 3.8e-24 115.5 157 37.6
Sabra10G0013900 Salix brachista HOM05D004153 ORTHO05D004678 5.0e-24 115.2 120 50.8
ClCG09G006030 Citrullus lanatus HOM05D004153 ORTHO05D004678 1.1e-23 114.0 155 38.7
BraA04t18942Z Brassica rapa HOM05D004153 ORTHO05D004678 9.4e-23 110.9 157 37.6
Sed0026977 Sechium edule HOM05D004153 ORTHO05D004678 2.1e-22 109.8 158 36.1
Thhalv10001647m.g Eutrema salsugineum HOM05D004153 ORTHO05D004678 6.1e-22 108.2 158 37.3
A04p35060 Brassica napus HOM05D004153 ORTHO05D004678 1.0e-21 107.5 157 36.3
C04p72970 Brassica napus HOM05D004153 ORTHO05D004678 1.0e-21 107.5 157 36.3
BcaC02g06991 Brassica carinata HOM05D004153 ORTHO05D004678 4.0e-21 105.5 157 35.7
BolC4t28778H Brassica oleracea HOM05D004153 ORTHO05D004678 4.0e-21 105.5 157 35.7
Sp4g29700 Schrenkiella parvula HOM05D004153 ORTHO05D004678 1.5e-20 103.6 157 36.9
ATR0796G004 Amborella trichopoda HOM05D004153 ORTHO05D004678 5.7e-20 101.7 154 34.4
C04p00110 Brassica napus HOM05D004153 ORTHO05D004678 5.7e-20 101.7 157 36.9
MD11G1304700 Malus domestica HOM05D004153 ORTHO05D004678 1.7e-19 100.1 101 46.5
BcaB06g29494 Brassica carinata HOM05D004153 ORTHO05D004678 2.8e-19 99.4 157 34.4
BcaB06g29497 Brassica carinata HOM05D004153 ORTHO05D004678 2.8e-19 99.4 157 34.4
BcaC02g12543 Brassica carinata HOM05D004153 ORTHO05D004678 2.8e-19 99.4 157 36.3
BolC4t21658H Brassica oleracea HOM05D004153 ORTHO05D004678 3.7e-19 99.0 157 38.2
BcaB06g29496 Brassica carinata HOM05D004153 ORTHO05D004678 1.6e-17 93.6 151 34.4
MELO3C016017.2 Cucumis melo HOM05D004153 ORTHO05D004678 2.7e-17 92.8 161 34.8
BraA05t19015Z Brassica rapa HOM05D004153 ORTHO05D004678 7.7e-17 91.3 157 34.4
Rhsim01G0283900 Rhododendron simsii HOM05D004153 ORTHO05D004678 6.6e-16 88.2 156 31.4
A05p00190 Brassica napus HOM05D004153 ORTHO05D004678 8.6e-16 87.8 157 33.8
CsaV3_7G029110 Cucumis sativus L. HOM05D004153 ORTHO05D004678 8.6e-16 87.8 118 39.0
SEGI_18828 Sequoiadendron giganteum HOM05D004153 ORTHO05D004678 8.6e-16 87.8 155 30.3
HPP92_016940 Vanilla planifolia HOM05D004153 ORTHO05D004678 1.1e-15 87.4 155 31.6
Actinidia24837 Actinidia chinensis HOM05D004153 ORTHO05D004678 5.6e-15 85.1 109 34.9
CDE02G0764 Ceratophyllum demersum HOM05D004153 ORTHO05D004678 1.8e-13 80.1 126 37.3
Lj1C32T8 Lonicera japonica HOM05D004153 ORTHO05D004678 3.0e-13 79.3 157 33.1
BcaB02g08747 Brassica carinata HOM05D004153 ORTHO05D004678 1.3e-11 73.9 157 31.8
ECA248G0131 Erigeron canadensis HOM05D004153 ORTHO05D004678 1.7e-11 73.6 73 54.8
AagrBONN_evm.TU.Sc2ySwM_362.296 Anthoceros agrestis HOM05D004153 ORTHO05D004678 2.2e-11 73.2 139 30.2
CBR_g30074 Chara braunii HOM05D004153 ORTHO05D004678 2.2e-11 73.2 145 28.3
Pp3c10_6760 Physcomitrium patens HOM05D004153 ORTHO05D004678 5.4e-10 68.6 146 30.8
Mapoly0050s0023 Marchantia polymorpha HOM05D004153 ORTHO05D004678 1.0e-08 64.3 151 28.5
SMO115G0169 Selaginella moellendorffii HOM05D004153 ORTHO05D004678 5.0e-08 62.0 139 29.5
Pp3c2_17540 Physcomitrium patens HOM05D004153 ORTHO05D004678 8.6e-08 61.2 146 28.8
Pp3c24_14170 Physcomitrium patens HOM05D004153 ORTHO05D004678 1.9e-07 60.1 151 28.5
Dinv19716 Davidia involucrata HOM05D004153 ORTHO05D004678 4.3e-07 58.9 159 28.9
Os05g0151200 Oryza sativa ssp. japonica HOM05D004153 ORTHO05D004678 4.3e-07 58.9 95 32.6
Actinidia21057 Actinidia chinensis HOM05D004153 ORTHO05D004678 1.2e-06 57.4 119 32.8
Zm00001eb354150 Zea mays HOM05D004153 ORTHO05D004678 3.6e-06 55.8 107 30.8


User provided reference genes

Program Settings