Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.15G144700 Glycine max HOM05D005143 ORTHO05D006404 4.9e-143 511.1 263 100.0
Glyma.09G039500 Glycine max HOM05D005143 ORTHO05D006404 1.8e-137 492.7 262 95.8
Phvul.009G253600 Phaseolus vulgaris HOM05D005143 ORTHO05D006404 2.7e-125 452.2 258 88.4
VMungo1309G2864 Vigna mungo HOM05D005143 ORTHO05D006404 2.3e-124 449.1 257 87.9
Medtr2g034880 Medicago truncatula HOM05D005143 ORTHO05D006404 9.6e-115 417.2 260 83.1
TPR.G27704 Trifolium pratense HOM05D005143 ORTHO05D006404 1.6e-114 416.4 259 81.9
Lj6g0005650 Lotus japonicus HOM05D005143 ORTHO05D006404 5.3e-113 411.4 260 81.5
Ca_01881_v3 Cicer arietinum L. HOM05D005143 ORTHO05D006404 8.5e-111 404.1 264 78.8
Ca_01895_v3 Cicer arietinum L. HOM05D005143 ORTHO05D006404 8.5e-111 404.1 264 78.8
Psat1g158200 Pisum sativum HOM05D005143 ORTHO05D006404 5.5e-110 401.4 260 79.6
Lalb_Chr20g0121021 Lupinus albus HOM05D005143 ORTHO05D006404 1.9e-107 392.9 262 76.7
arahy.Tifrunner.gnm1.ann1.UTG064 Arachis hypogaea HOM05D005143 ORTHO05D006404 3.1e-105 385.6 267 73.4
Lalb_Chr18g0058921 Lupinus albus HOM05D005143 ORTHO05D006404 3.8e-103 378.6 263 74.5
Cfa015478 Carpinus fangiana HOM05D005143 ORTHO05D006404 3.9e-100 368.6 261 73.6
Phvul.003G110600 Phaseolus vulgaris HOM05D005143 ORTHO05D006404 6.9e-97 357.8 258 72.5
QL06p011304 Quercus lobata HOM05D005143 ORTHO05D006404 3.4e-96 355.5 262 70.2
Glyma.17G031200 Glycine max HOM05D005143 ORTHO05D006404 1.1e-94 350.5 258 70.5
VMungo1215G3234 Vigna mungo HOM05D005143 ORTHO05D006404 1.4e-94 350.1 258 70.9
Haze_01089 Corylus avellana HOM05D005143 ORTHO05D006404 2.5e-94 349.4 260 71.9
Potri.010G140400 Populus trichocarpa HOM05D005143 ORTHO05D006404 1.3e-90 337.0 262 65.3
CiPaw.01G142400 Carya illinoinensis HOM05D005143 ORTHO05D006404 1.4e-89 333.6 259 67.2
Sabra10G0108500 Salix brachista HOM05D005143 ORTHO05D006404 9.1e-89 330.9 262 63.7
Dinv44320 Davidia involucrata HOM05D005143 ORTHO05D006404 2.0e-88 329.7 246 69.1
TPR.G27702 Trifolium pratense HOM05D005143 ORTHO05D006404 1.0e-87 327.4 259 70.7
Manes.15G007000 Manihot esculenta HOM05D005143 ORTHO05D006404 1.3e-87 327.0 264 65.9
Ciclev10007083m.g Citrus clementina HOM05D005143 ORTHO05D006404 2.2e-87 326.2 250 68.4
Medtr2g034890 Medicago truncatula HOM05D005143 ORTHO05D006404 2.9e-87 325.9 245 72.2
Dinv02072 Davidia involucrata HOM05D005143 ORTHO05D006404 3.8e-87 325.5 258 66.3
FvH4_4g19280 Fragaria vesca HOM05D005143 ORTHO05D006404 2.5e-86 322.8 253 68.0
TWI09G1317 Tripterygium wilfordii HOM05D005143 ORTHO05D006404 5.5e-86 321.6 251 67.7
Sabra08G0082500 Salix brachista HOM05D005143 ORTHO05D006404 7.2e-86 321.2 248 66.1
FAN12G3988 Fragaria x ananassa HOM05D005143 ORTHO05D006404 9.4e-86 320.9 253 67.6
Thecc.04G294800 Theobroma cacao HOM05D005143 ORTHO05D006404 1.6e-85 320.1 250 68.0
COL.COLO4_34676 Corchorus olitorius HOM05D005143 ORTHO05D006404 6.1e-85 318.2 252 65.9
Duzib151G0017 Durio zibethinus HOM05D005143 ORTHO05D006404 1.0e-84 317.4 262 63.4
Hma1.2p1_0013F.1_g008930 Hydrangea macrophylla HOM05D005143 ORTHO05D006404 1.0e-84 317.4 257 65.4
CiPaw.02G077100 Carya illinoinensis HOM05D005143 ORTHO05D006404 2.3e-84 316.2 256 67.6
Atru.chr4.2951 Acer truncatum HOM05D005143 ORTHO05D006404 4.0e-84 315.5 258 64.7
Potri.008G108900 Populus trichocarpa HOM05D005143 ORTHO05D006404 4.0e-84 315.5 242 66.9
Potri.T170901 Populus trichocarpa HOM05D005143 ORTHO05D006404 4.0e-84 315.5 242 66.9
RcHm_v2.0_Chr4g0424271 Rosa chinensis HOM05D005143 ORTHO05D006404 6.7e-84 314.7 253 66.0
Prupe.1G125800 Prunus persica HOM05D005143 ORTHO05D006404 2.6e-83 312.8 251 67.7
GSVIVG01035046001 Vitis vinifera HOM05D005143 ORTHO05D006404 3.7e-82 308.9 258 62.4
Actinidia40351 Actinidia chinensis HOM05D005143 ORTHO05D006404 4.8e-82 308.5 259 61.8
Lj6A685T16 Lonicera japonica HOM05D005143 ORTHO05D006404 1.6e-80 303.5 259 62.9
Gohir.A10G168900 Gossypium hirsutum HOM05D005143 ORTHO05D006404 2.0e-80 303.1 260 60.8
Gohir.D10G175100 Gossypium hirsutum HOM05D005143 ORTHO05D006404 2.0e-80 303.1 260 60.8
CSS0004405 Camellia sinensis var. sinensis HOM05D005143 ORTHO05D006404 2.7e-80 302.8 260 63.1
MD16G1159000 Malus domestica HOM05D005143 ORTHO05D006404 4.5e-80 302.0 251 65.3
Gorai.011G195900 Gossypium raimondii HOM05D005143 ORTHO05D006404 7.7e-80 301.2 260 60.8
Duzib052G1152 Durio zibethinus HOM05D005143 ORTHO05D006404 1.3e-79 300.4 242 64.5
PGR031G1222 Punica granatum HOM05D005143 ORTHO05D006404 1.3e-79 300.4 252 63.1
MD13G1158800 Malus domestica HOM05D005143 ORTHO05D006404 1.7e-79 300.1 248 63.3
Actinidia15583 Actinidia chinensis HOM05D005143 ORTHO05D006404 5.0e-79 298.5 259 59.8
TAR362G0369 Trochodendron aralioides HOM05D005143 ORTHO05D006404 1.2e-77 293.9 244 62.3
BcaC03g17714 Brassica carinata HOM05D005143 ORTHO05D006404 1.6e-77 293.5 259 62.5
BolC2t11792H Brassica oleracea HOM05D005143 ORTHO05D006404 1.6e-77 293.5 259 62.5
vmacro08077 Vaccinium macrocarpon HOM05D005143 ORTHO05D006404 1.6e-77 293.5 261 58.2
A02p38010 Brassica napus HOM05D005143 ORTHO05D006404 2.7e-77 292.7 259 62.5
C02p57210 Brassica napus HOM05D005143 ORTHO05D006404 4.7e-77 292.0 259 62.2
BraA02t08785Z Brassica rapa HOM05D005143 ORTHO05D006404 4.7e-77 292.0 239 65.7
BcaB07g34148 Brassica carinata HOM05D005143 ORTHO05D006404 1.0e-76 290.8 259 62.2
arahy.Tifrunner.gnm1.ann1.PXPP98 Arachis hypogaea HOM05D005143 ORTHO05D006404 1.4e-76 290.4 201 72.6
Sed0010751 Sechium edule HOM05D005143 ORTHO05D006404 1.2e-75 287.3 248 59.3
AL8G22960 Arabidopsis lyrata HOM05D005143 ORTHO05D006404 2.0e-75 286.6 253 62.5
Cc03_g01170 Coffea canephora HOM05D005143 ORTHO05D006404 2.6e-75 286.2 258 60.5
PSO210G3751 Papaver somniferum HOM05D005143 ORTHO05D006404 2.6e-75 286.2 242 63.2
PSO761G0512 Papaver somniferum HOM05D005143 ORTHO05D006404 5.7e-75 285.0 261 59.4
ClCG05G006400 Citrullus lanatus HOM05D005143 ORTHO05D006404 7.5e-75 284.6 257 60.3
CARHR182240 Cardamine hirsuta HOM05D005143 ORTHO05D006404 9.8e-75 284.3 243 62.1
Sp2g19670 Schrenkiella parvula HOM05D005143 ORTHO05D006404 1.3e-74 283.9 259 60.2
Thhalv10005363m.g Eutrema salsugineum HOM05D005143 ORTHO05D006404 1.7e-74 283.5 239 63.6
BolC7t44512H Brassica oleracea HOM05D005143 ORTHO05D006404 2.2e-74 283.1 238 63.0
AT5G49320 Arabidopsis thaliana HOM05D005143 ORTHO05D006404 1.1e-73 280.8 254 61.8
C07p39840 Brassica napus HOM05D005143 ORTHO05D006404 1.1e-73 280.8 238 62.6
Carub.0008s0919 Capsella rubella HOM05D005143 ORTHO05D006404 1.1e-73 280.8 259 60.2
Sopen01g026590 Solanum pennellii HOM05D005143 ORTHO05D006404 1.1e-73 280.8 247 61.1
CsaV3_3G015020 Cucumis sativus L. HOM05D005143 ORTHO05D006404 1.8e-73 280.0 250 60.0
FAN07G0192 Fragaria x ananassa HOM05D005143 ORTHO05D006404 1.8e-73 280.0 210 70.0
Aa31LG11G7840 Aethionema arabicum HOM05D005143 ORTHO05D006404 3.1e-73 279.3 262 58.8
EL10Ac3g04926 Beta vulgaris HOM05D005143 ORTHO05D006404 3.1e-73 279.3 248 60.1
Cpa.g.sc9.99 Carica papaya HOM05D005143 ORTHO05D006404 5.4e-73 278.5 253 58.5
PGSC0003DMG400014988 Solanum tuberosum HOM05D005143 ORTHO05D006404 5.4e-73 278.5 247 60.7
THA.LOC104818896 Tarenaya hassleriana HOM05D005143 ORTHO05D006404 9.1e-73 277.7 237 59.1
CANSAT78G1129 Cannabis sativa HOM05D005143 ORTHO05D006404 1.6e-72 276.9 242 62.0
BcaNung02596 Brassica carinata HOM05D005143 ORTHO05D006404 7.7e-72 274.6 238 62.2
CAN.G1016.6 Capsicum annuum HOM05D005143 ORTHO05D006404 1.0e-71 274.2 246 60.2
MELO3C006698.2 Cucumis melo HOM05D005143 ORTHO05D006404 1.0e-71 274.2 249 59.0
Aqoxy2G02819 Aquilegia oxysepala HOM05D005143 ORTHO05D006404 6.5e-71 271.6 247 57.9
Solyc01g060450.3 Solanum lycopersicum HOM05D005143 ORTHO05D006404 1.5e-70 270.4 247 59.1
MSTRG.21781 Avicennia marina HOM05D005143 ORTHO05D006404 1.9e-70 270.0 242 58.7
DCAR_030483 Daucus carota HOM05D005143 ORTHO05D006404 4.2e-70 268.9 248 56.9
Nitab4.5_0000169g0050 Nicotiana tabacum HOM05D005143 ORTHO05D006404 4.2e-70 268.9 245 59.2
DCAR_002501 Daucus carota HOM05D005143 ORTHO05D006404 5.5e-70 268.5 257 57.6
Nitab4.5_0001695g0020 Nicotiana tabacum HOM05D005143 ORTHO05D006404 5.5e-70 268.5 245 59.2
Eucgr.A00195 Eucalyptus grandis HOM05D005143 ORTHO05D006404 7.2e-70 268.1 246 61.4
SalBow5G4838 Salvia bowleyana HOM05D005143 ORTHO05D006404 1.2e-69 267.3 225 61.3
ECA246G2788 Erigeron canadensis HOM05D005143 ORTHO05D006404 2.1e-69 266.5 250 58.8
Oeu016479.2 Olea europaea HOM05D005143 ORTHO05D006404 2.1e-69 266.5 241 60.2
Lsat_1_v5_gn_6_115260 Lactuca sativa HOM05D005143 ORTHO05D006404 8.0e-69 264.6 245 57.6
Lalb_Chr12g0200981 Lupinus albus HOM05D005143 ORTHO05D006404 1.0e-68 264.2 247 60.3
SGA_v2.0_scaffold119G32680 Striga asiatica HOM05D005143 ORTHO05D006404 3.0e-68 262.7 225 59.6
AUR62035066 Chenopodium quinoa HOM05D005143 ORTHO05D006404 8.9e-68 261.2 241 58.1
Migut.N00060 Erythranthe guttata HOM05D005143 ORTHO05D006404 8.9e-68 261.2 248 56.9
arahy.Tifrunner.gnm1.ann1.W9GTE1 Arachis hypogaea HOM05D005143 ORTHO05D006404 2.0e-67 260.0 241 61.0
Ah.04g154920 Amaranthus hybridus HOM05D005143 ORTHO05D006404 9.8e-67 257.7 243 57.6
arahy.Tifrunner.gnm1.ann1.RF9CFS Arachis hypogaea HOM05D005143 ORTHO05D006404 9.8e-67 257.7 241 60.6
Sc25g0003440 Simmondsia chinensis HOM05D005143 ORTHO05D006404 4.1e-65 252.3 229 58.5
Sabra08G0082600 Salix brachista HOM05D005143 ORTHO05D006404 1.2e-64 250.8 241 56.0
Nn3g21616 Nelumbo nucifera HOM05D005143 ORTHO05D006404 5.9e-64 248.4 227 60.8
Hund02954 Selenicereus undatus HOM05D005143 ORTHO05D006404 2.5e-62 243.0 270 52.2
MBI19_g29991_MAGBIO Magnolia biondii HOM05D005143 ORTHO05D006404 4.0e-60 235.7 245 53.9
Peaxi162Scf00065g00033 Petunia axillaris HOM05D005143 ORTHO05D006404 4.0e-60 235.7 245 53.9
FAN12G2949 Fragaria x ananassa HOM05D005143 ORTHO05D006404 3.5e-56 222.6 202 61.4
HanXRQChr03g0093441 Helianthus annuus HOM05D005143 ORTHO05D006404 3.0e-55 219.5 243 51.9
SGA_v2.0_scaffold91G28048 Striga asiatica HOM05D005143 ORTHO05D006404 6.8e-52 208.4 242 51.2
Rhsim04G0232200 Rhododendron simsii HOM05D005143 ORTHO05D006404 8.9e-52 208.0 261 48.3
CDE11G0634 Ceratophyllum demersum HOM05D005143 ORTHO05D006404 7.5e-51 204.9 233 48.5
TAR633G2465 Trochodendron aralioides HOM05D005143 ORTHO05D006404 1.7e-47 193.7 155 63.9
Carub.0008s0727 Capsella rubella HOM05D005143 ORTHO05D006404 2.5e-46 189.9 239 50.2
HPP92_001064 Vanilla planifolia HOM05D005143 ORTHO05D006404 3.3e-46 189.5 232 47.0
Oeu006437.1 Olea europaea HOM05D005143 ORTHO05D006404 4.1e-41 172.6 134 64.2
Nitab4.5_0008735g0010 Nicotiana tabacum HOM05D005143 ORTHO05D006404 6.2e-37 158.7 185 51.9
Zm00001eb127640 Zea mays HOM05D005143 ORTHO05D006404 1.4e-36 157.5 210 43.8
Nitab4.5_0000531g0070 Nicotiana tabacum HOM05D005143 ORTHO05D006404 8.9e-36 154.8 267 40.8
SEGI_27691 Sequoiadendron giganteum HOM05D005143 ORTHO05D006404 9.9e-35 151.4 230 38.7
AUR62016151 Chenopodium quinoa HOM05D005143 ORTHO05D006404 2.2e-34 150.2 140 57.9
CDE05G0725 Ceratophyllum demersum HOM05D005143 ORTHO05D006404 2.4e-33 146.7 177 46.9
Os01g0253400 Oryza sativa ssp. japonica HOM05D005143 ORTHO05D006404 2.7e-32 143.3 216 40.7
AUR62043573 Chenopodium quinoa HOM05D005143 ORTHO05D006404 6.0e-32 142.1 116 59.5
SEGI_03781 Sequoiadendron giganteum HOM05D005143 ORTHO05D006404 6.0e-32 142.1 230 37.4
SEGI_36016 Sequoiadendron giganteum HOM05D005143 ORTHO05D006404 3.0e-31 139.8 236 36.4
Hund11951 Selenicereus undatus HOM05D005143 ORTHO05D006404 5.1e-31 139.0 160 47.5
AagrBONN_evm.TU.Sc2ySwM_368.1032 Anthoceros agrestis HOM05D005143 ORTHO05D006404 7.3e-30 135.2 235 37.9
ATR0706G251 Amborella trichopoda HOM05D005143 ORTHO05D006404 5.2e-28 129.0 236 36.9
Nitab4.5_0005463g0090 Nicotiana tabacum HOM05D005143 ORTHO05D006404 2.1e-24 117.1 157 45.9
arahy.Tifrunner.gnm1.ann1.T63ME6 Arachis hypogaea HOM05D005143 ORTHO05D006404 1.6e-16 90.9 77 64.9
Lj3C827T17 Lonicera japonica HOM05D005143 ORTHO05D006404 1.0e-15 88.2 83 55.4
A06p38430 Brassica napus HOM05D005143 ORTHO05D006404 2.8e-13 80.1 74 62.2
BraA06t26757Z Brassica rapa HOM05D005143 ORTHO05D006404 2.8e-13 80.1 74 62.2
CDE05G1990 Ceratophyllum demersum HOM05D005143 ORTHO05D006404 3.7e-13 79.7 186 31.7
arahy.Tifrunner.gnm1.ann1.A1K99E Arachis hypogaea HOM05D005143 ORTHO05D019760 3.5e-08 63.2 50 68.0
arahy.Tifrunner.gnm1.ann1.I4LEPW Arachis hypogaea HOM05D005143 ORTHO05D019760 6.0e-08 62.4 51 68.6
MBI09_g03808_MAGBIO Magnolia biondii HOM05D005143 ORTHO05D000022 6.0e-08 62.4 92 40.2
SMO118G0365 Selaginella moellendorffii HOM05D005143 ORTHO05D006404 1.3e-07 61.2 146 28.8


User provided reference genes

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