Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.15G143900 Glycine max HOM05D002444 ORTHO05D004748 4.7e-99 364.8 217 100.0
Glyma.09G038800 Glycine max HOM05D002444 ORTHO05D004748 3.4e-81 305.4 218 87.2
Phvul.009G254100 Phaseolus vulgaris HOM05D002444 ORTHO05D004748 1.8e-66 256.5 254 66.9
Lalb_Chr20g0120971 Lupinus albus HOM05D002444 ORTHO05D004748 2.9e-64 249.2 210 69.5
Lj6g0008376 Lotus japonicus HOM05D002444 ORTHO05D004748 8.4e-64 247.7 218 72.9
Lalb_Chr18g0058901 Lupinus albus HOM05D002444 ORTHO05D004748 1.4e-63 246.9 211 68.2
VMungo1309G0802 Vigna mungo HOM05D002444 ORTHO05D004748 1.6e-62 243.4 241 68.5
Psat1g159880 Pisum sativum HOM05D002444 ORTHO05D004748 8.6e-61 237.7 193 69.4
Medtr2g034760 Medicago truncatula HOM05D002444 ORTHO05D004748 9.6e-60 234.2 226 67.7
QL06p011459 Quercus lobata HOM05D002444 ORTHO05D004748 1.3e-48 197.2 212 47.2
Haze_01081 Corylus avellana HOM05D002444 ORTHO05D004748 3.8e-48 195.7 206 48.5
GSVIVG01035038001 Vitis vinifera HOM05D002444 ORTHO05D004748 3.5e-46 189.1 208 51.0
TWI09G1526 Tripterygium wilfordii HOM05D002444 ORTHO05D004748 2.3e-45 186.4 208 44.7
QL02p088728 Quercus lobata HOM05D002444 ORTHO05D004748 3.9e-45 185.7 212 44.8
CiPaw.01G141700 Carya illinoinensis HOM05D002444 ORTHO05D004748 6.7e-45 184.9 130 64.6
Prupe.1G123300 Prunus persica HOM05D002444 ORTHO05D004748 6.7e-45 184.9 130 63.1
Potri.008G108400 Populus trichocarpa HOM05D002444 ORTHO05D004748 1.9e-44 183.3 212 56.1
TWI73G0575 Tripterygium wilfordii HOM05D002444 ORTHO05D004748 1.9e-44 183.3 205 45.4
COL.COLO4_34661 Corchorus olitorius HOM05D001121 ORTHO05D009235 1.3e-43 180.6 130 61.5
MD13G1157600 Malus domestica HOM05D002444 ORTHO05D004748 1.3e-43 180.6 130 61.5
MD16G1158500 Malus domestica HOM05D002444 ORTHO05D004748 1.3e-43 180.6 129 60.5
Thecc.04G296000 Theobroma cacao HOM05D002444 ORTHO05D004748 1.3e-43 180.6 129 62.8
ClCG06G004730 Citrullus lanatus HOM05D002444 ORTHO05D004748 2.8e-43 179.5 125 60.8
arahy.Tifrunner.gnm1.ann1.TF3LVT Arachis hypogaea HOM05D002444 ORTHO05D004748 4.8e-43 178.7 132 65.9
DCAR_023333 Daucus carota HOM05D002444 ORTHO05D004748 8.1e-43 177.9 131 61.1
Gohir.A10G167900 Gossypium hirsutum HOM05D002444 ORTHO05D004748 1.8e-42 176.8 125 61.6
Gorai.011G194700 Gossypium raimondii HOM05D002444 ORTHO05D004748 6.9e-42 174.9 125 61.6
CSS0013068 Camellia sinensis var. sinensis HOM05D002444 ORTHO05D004748 9.0e-42 174.5 211 45.0
Sed0022311 Sechium edule HOM05D002444 ORTHO05D004748 9.0e-42 174.5 124 59.7
Actinidia40354 Actinidia chinensis HOM05D002444 ORTHO05D004748 2.0e-41 173.3 206 43.7
Gohir.D10G174000 Gossypium hirsutum HOM05D002444 ORTHO05D004748 2.0e-41 173.3 125 60.8
FAN07G2635 Fragaria x ananassa HOM05D002444 ORTHO05D004748 4.5e-41 172.2 130 60.8
Hma1.2p1_0013F.1_g008880 Hydrangea macrophylla HOM05D002444 ORTHO05D004748 5.8e-41 171.8 208 42.3
Duzib151G1201 Durio zibethinus HOM05D002444 ORTHO05D004748 7.6e-41 171.4 157 54.1
TAR362G0953 Trochodendron aralioides HOM05D002444 ORTHO05D004748 7.6e-41 171.4 124 60.5
CsaV3_6G022510 Cucumis sativus L. HOM05D002444 ORTHO05D004748 9.9e-41 171.0 131 58.8
FAN12G3242 Fragaria x ananassa HOM05D002444 ORTHO05D004748 9.9e-41 171.0 129 58.1
FvH4_4g19330 Fragaria vesca HOM05D002444 ORTHO05D004748 6.4e-40 168.3 129 56.6
DCAR_027017 Daucus carota HOM05D002444 ORTHO05D004748 1.1e-39 167.5 124 58.1
PGR004G0577 Punica granatum HOM05D002444 ORTHO05D004748 1.1e-39 167.5 128 58.6
Manes.03G202000 Manihot esculenta HOM05D002444 ORTHO05D004748 2.4e-39 166.4 211 49.8
Atru.chr4.2965 Acer truncatum HOM05D002444 ORTHO05D004748 9.3e-39 164.5 128 57.0
FAN12G1068 Fragaria x ananassa HOM05D002444 ORTHO05D004748 9.3e-39 164.5 122 58.2
Dinv44314 Davidia involucrata HOM05D002444 ORTHO05D004748 3.5e-38 162.5 211 53.6
DCAR_001718 Daucus carota HOM05D002444 ORTHO05D004748 1.0e-37 161.0 125 57.6
Rhsim04G0232700 Rhododendron simsii HOM05D002444 ORTHO05D004748 3.9e-37 159.1 130 56.2
Sabra08G0082100 Salix brachista HOM05D002444 ORTHO05D009235 6.7e-37 158.3 129 52.7
Hma1.2p1_0078F.1_g040160 Hydrangea macrophylla HOM05D002444 ORTHO05D004748 8.7e-37 157.9 129 52.7
vmacro08072 Vaccinium macrocarpon HOM05D002444 ORTHO05D009235 1.1e-36 157.5 124 54.8
Dinv02080 Davidia involucrata HOM05D000043 ORTHO05D000600 2.5e-36 156.4 175 45.7
Aqoxy2G02793 Aquilegia oxysepala HOM05D002444 ORTHO05D004748 7.4e-36 154.8 123 56.9
ECA233G1761 Erigeron canadensis HOM05D002444 ORTHO05D004748 1.3e-35 154.1 117 55.6
Cc03_g01110 Coffea canephora HOM05D002444 ORTHO05D004748 2.8e-35 152.9 130 54.6
VMungo0720G0625 Vigna mungo HOM05D002444 ORTHO05D004748 1.4e-34 150.6 109 59.6
MBI18_g28459_MAGBIO Magnolia biondii HOM05D002444 ORTHO05D004748 2.4e-34 149.8 128 53.1
ATR0706G131 Amborella trichopoda HOM05D002444 ORTHO05D004748 4.0e-34 149.1 116 56.9
arahy.Tifrunner.gnm1.ann1.84BLH7 Arachis hypogaea HOM05D002444 ORTHO05D004748 5.3e-34 148.7 199 44.7
Carub.0008s0925 Capsella rubella HOM05D002444 ORTHO05D004748 6.9e-34 148.3 105 60.0
EL10Ac3g04919 Beta vulgaris HOM05D002444 ORTHO05D009235 9.0e-34 147.9 134 50.0
Gorai.007G304800 Gossypium raimondii HOM05D002444 ORTHO05D004748 9.0e-34 147.9 115 55.7
AL8G23000 Arabidopsis lyrata HOM05D002444 ORTHO05D004748 1.2e-33 147.5 129 53.5
PSO210G2776 Papaver somniferum HOM05D002444 ORTHO05D004748 1.2e-33 147.5 113 59.3
PSO761G0121 Papaver somniferum HOM05D002444 ORTHO05D004748 1.2e-33 147.5 113 59.3
Gohir.D11G282100 Gossypium hirsutum HOM05D002444 ORTHO05D004748 1.5e-33 147.1 115 54.8
AT5G49350 Arabidopsis thaliana HOM05D002444 ORTHO05D004748 5.8e-33 145.2 108 56.5
Gohir.A11G272000 Gossypium hirsutum HOM05D002444 ORTHO05D004748 5.8e-33 145.2 115 54.8
MSTRG.3869 Avicennia marina HOM05D002444 ORTHO05D004748 7.6e-33 144.8 125 49.6
Duzib177G0976 Durio zibethinus HOM05D002444 ORTHO05D004748 7.6e-33 144.8 123 53.7
Glyma.10G147900 Glycine max HOM05D002444 ORTHO05D004748 7.6e-33 144.8 118 55.9
BcaC06g30700 Brassica carinata HOM05D000446 ORTHO05D000321 1.0e-32 144.4 105 58.1
Peaxi162Scf00065g00322 Petunia axillaris HOM05D002444 ORTHO05D004748 1.0e-32 144.4 123 54.5
A06p38390 Brassica napus HOM05D002444 ORTHO05D004748 1.3e-32 144.1 131 49.6
BraA06t26753Z Brassica rapa HOM05D002444 ORTHO05D004748 1.3e-32 144.1 131 49.6
AUR62016142 Chenopodium quinoa HOM05D002444 ORTHO05D004748 2.9e-32 142.9 132 48.5
BolC7t44514H Brassica oleracea HOM05D002444 ORTHO05D004748 3.8e-32 142.5 131 48.1
RcHm_v2.0_Chr4g0424351 Rosa chinensis HOM05D002444 ORTHO05D004748 3.8e-32 142.5 115 51.3
Sp2g19700 Schrenkiella parvula HOM05D002444 ORTHO05D004748 3.8e-32 142.5 129 50.4
Ah.04g154860 Amaranthus hybridus HOM05D002444 ORTHO05D009235 4.9e-32 142.1 134 49.3
Ciclev10006963m.g Citrus clementina HOM05D002444 ORTHO05D004748 4.9e-32 142.1 93 64.5
SGA_v2.0_scaffold18G08390 Striga asiatica HOM05D002444 ORTHO05D009235 4.9e-32 142.1 129 49.6
BcaNung02598 Brassica carinata HOM05D002444 ORTHO05D004748 6.5e-32 141.7 131 48.1
C07p39870 Brassica napus HOM05D000446 ORTHO05D000321 6.5e-32 141.7 131 48.1
Sc19g0003190 Simmondsia chinensis HOM05D002444 ORTHO05D004748 6.5e-32 141.7 132 52.3
THA.LOC109116877 Tarenaya hassleriana HOM05D002444 ORTHO05D004748 8.4e-32 141.4 130 50.8
Thhalv10004800m.g Eutrema salsugineum HOM05D002444 ORTHO05D004748 1.1e-31 141.0 129 51.2
AUR62042953 Chenopodium quinoa HOM05D002444 ORTHO05D009235 1.4e-31 140.6 135 46.7
Nn3g21645 Nelumbo nucifera HOM05D002444 ORTHO05D004748 1.4e-31 140.6 106 55.7
Phvul.007G200600 Phaseolus vulgaris HOM05D002444 ORTHO05D004748 2.5e-31 139.8 107 57.9
Thecc.05G321400 Theobroma cacao HOM05D002444 ORTHO05D004748 2.5e-31 139.8 108 56.5
Sopen01g026460 Solanum pennellii HOM05D002444 ORTHO05D004748 3.2e-31 139.4 127 52.8
HanXRQChr05g0148181 Helianthus annuus HOM05D002444 ORTHO05D004748 4.2e-31 139.0 114 57.0
QL03p018315 Quercus lobata HOM05D002444 ORTHO05D004748 4.2e-31 139.0 115 53.0
Eucgr.H04030 Eucalyptus grandis HOM05D002444 ORTHO05D004748 5.5e-31 138.7 112 58.0
Lj6A687G30 Lonicera japonica HOM05D002444 ORTHO05D004748 7.1e-31 138.3 114 58.8
PGSC0003DMG403007553 Solanum tuberosum HOM05D002444 ORTHO05D004748 7.1e-31 138.3 127 52.8
Solyc01g060260.4 Solanum lycopersicum HOM05D002444 ORTHO05D004748 9.3e-31 137.9 127 52.8
arahy.Tifrunner.gnm1.ann1.JXUF4U Arachis hypogaea HOM05D002444 ORTHO05D004748 1.6e-30 137.1 107 51.4
Hund03099 Selenicereus undatus HOM05D002444 ORTHO05D004748 1.6e-30 137.1 133 47.4
Hund07137 Selenicereus undatus HOM05D002444 ORTHO05D004748 2.1e-30 136.7 133 48.9
CAN.G197.18 Capsicum annuum HOM05D002444 ORTHO05D004748 2.7e-30 136.3 123 51.2
CARHR182180 Cardamine hirsuta HOM05D002444 ORTHO05D004748 3.5e-30 136.0 117 52.1
PSO170G5203 Papaver somniferum HOM05D002444 ORTHO05D004748 3.5e-30 136.0 99 55.6
arahy.Tifrunner.gnm1.ann1.1Z9C7T Arachis hypogaea HOM05D002444 ORTHO05D004748 4.6e-30 135.6 107 50.5
Migut.N00054 Erythranthe guttata HOM05D002444 ORTHO05D004748 6.0e-30 135.2 100 58.0
Migut.G00098 Erythranthe guttata HOM05D002444 ORTHO05D004748 1.3e-29 134.0 129 48.8
Lj5g0002521 Lotus japonicus HOM05D002444 ORTHO05D004748 1.8e-29 133.7 130 47.7
Manes.09G176000 Manihot esculenta HOM05D002444 ORTHO05D004748 1.8e-29 133.7 109 55.0
Prupe.6G314800 Prunus persica HOM05D002444 ORTHO05D004748 1.8e-29 133.7 136 49.3
Cfa006686 Carpinus fangiana HOM05D002444 ORTHO05D004748 2.3e-29 133.3 98 57.1
Hund11954 Selenicereus undatus HOM05D002444 ORTHO05D004748 2.3e-29 133.3 107 51.4
CiPaw.07G028300 Carya illinoinensis HOM05D002444 ORTHO05D004748 3.0e-29 132.9 115 51.3
SalBow5G4491 Salvia bowleyana HOM05D000356 ORTHO05D000265 3.0e-29 132.9 124 48.4
Atru.chr2.152 Acer truncatum HOM05D002444 ORTHO05D004748 3.9e-29 132.5 101 56.4
Medtr1g083900 Medicago truncatula HOM05D002444 ORTHO05D004748 3.9e-29 132.5 108 54.6
AUR62000681 Chenopodium quinoa HOM05D002444 ORTHO05D004748 5.1e-29 132.1 102 54.9
AUR62005275 Chenopodium quinoa HOM05D002444 ORTHO05D004748 5.1e-29 132.1 103 54.4
Aa31LG11G7920 Aethionema arabicum HOM05D002444 ORTHO05D004748 6.7e-29 131.7 132 50.0
Lalb_Chr18g0046061 Lupinus albus HOM05D002444 ORTHO05D004748 1.1e-28 131.0 118 48.3
Lsat_1_v5_gn_6_114241 Lactuca sativa HOM05D002444 ORTHO05D004748 2.5e-28 129.8 186 47.8
Nn4g25640 Nelumbo nucifera HOM05D002444 ORTHO05D004748 2.5e-28 129.8 105 56.2
Lsat_1_v5_gn_2_45680 Lactuca sativa HOM05D002444 ORTHO05D004748 4.3e-28 129.0 178 48.9
Nitab4.5_0000169g0080 Nicotiana tabacum HOM05D002444 ORTHO05D004748 4.3e-28 129.0 92 62.0
Nitab4.5_0005333g0030 Nicotiana tabacum HOM05D002444 ORTHO05D004748 4.3e-28 129.0 91 63.7
SalBow8G4791 Salvia bowleyana HOM05D002444 ORTHO05D004748 7.4e-28 128.3 130 49.2
BcaC09g49563 Brassica carinata HOM05D002444 ORTHO05D004748 2.1e-27 126.7 130 46.2
A01p27390 Brassica napus HOM05D002444 ORTHO05D004748 2.1e-27 126.7 130 46.2
BolC1t03479H Brassica oleracea HOM05D001136 ORTHO05D004748 2.1e-27 126.7 130 46.2
BraA01t02879Z Brassica rapa HOM05D002444 ORTHO05D004748 2.1e-27 126.7 130 46.2
TPR.G2633 Trifolium pratense HOM05D002444 ORTHO05D004748 2.1e-27 126.7 105 53.3
Sc16g0008950 Simmondsia chinensis HOM05D002444 ORTHO05D004748 3.7e-27 125.9 96 57.3
BcaB04g20158 Brassica carinata HOM05D002444 ORTHO05D004748 8.2e-27 124.8 130 45.4
SalBow8G0484 Salvia bowleyana HOM05D002444 ORTHO05D004748 8.2e-27 124.8 130 47.7
ECA246G3411 Erigeron canadensis HOM05D002444 ORTHO05D004748 1.1e-26 124.4 209 48.3
Sp2g06560 Schrenkiella parvula HOM05D002444 ORTHO05D004748 1.1e-26 124.4 130 44.6
CsaV3_1G038300 Cucumis sativus L. HOM05D002444 ORTHO05D004748 1.4e-26 124.0 104 52.9
CARHR289860 Cardamine hirsuta HOM05D002444 ORTHO05D004748 2.4e-26 123.2 126 45.2
Thhalv10023988m.g Eutrema salsugineum HOM05D002444 ORTHO05D004748 2.4e-26 123.2 126 45.2
unitig_748.g8711 Utricularia gibba HOM05D002444 ORTHO05D004748 3.1e-26 122.9 136 40.4
Potri.005G019200 Populus trichocarpa HOM05D002444 ORTHO05D004748 5.3e-26 122.1 93 55.9
AL1G65930 Arabidopsis lyrata HOM05D002444 ORTHO05D004748 9.0e-26 121.3 123 46.3
arahy.Tifrunner.gnm1.ann1.YQC48T Arachis hypogaea HOM05D002444 ORTHO05D004748 1.5e-25 120.6 132 50.8
TAR633G0381 Trochodendron aralioides HOM05D002444 ORTHO05D004748 2.0e-25 120.2 97 55.7
FAN09G2263 Fragaria x ananassa HOM05D002444 ORTHO05D004748 2.6e-25 119.8 128 48.4
Actinidia16853 Actinidia chinensis HOM05D002444 ORTHO05D004748 3.4e-25 119.4 106 49.1
THA.LOC104816880 Tarenaya hassleriana HOM05D002444 ORTHO05D004748 3.4e-25 119.4 128 42.2
Carub.0002s0784 Capsella rubella HOM05D002444 ORTHO05D004748 4.5e-25 119.0 103 50.5
MD04G1195000 Malus domestica HOM05D002444 ORTHO05D004748 5.9e-25 118.6 135 45.2
AT1G56320 Arabidopsis thaliana HOM05D002444 ORTHO05D004748 1.0e-24 117.9 103 48.5
COL.COLO4_04145 Corchorus olitorius HOM05D001136 ORTHO05D001144 1.0e-24 117.9 97 53.6
RcHm_v2.0_Chr3g0456891 Rosa chinensis HOM05D002444 ORTHO05D004748 1.0e-24 117.9 127 47.2
FvH4_6g07260 Fragaria vesca HOM05D002444 ORTHO05D004748 2.9e-24 116.3 128 47.7
Sabra05G0025700 Salix brachista HOM05D002444 ORTHO05D004748 3.8e-24 115.9 90 56.7
Sed0020654 Sechium edule HOM05D002444 ORTHO05D004748 3.8e-24 115.9 107 50.5
FAN14G2258 Fragaria x ananassa HOM05D002444 ORTHO05D004748 5.0e-24 115.5 134 46.3
FAN05G3647 Fragaria x ananassa HOM05D002444 ORTHO05D004748 6.5e-24 115.2 132 45.5
Psat0s3089g0080 Pisum sativum HOM05D002444 ORTHO05D004748 1.9e-23 113.6 90 54.4
Aa31LG2G11540 Aethionema arabicum HOM05D002444 ORTHO05D004748 3.2e-23 112.8 130 41.5
MELO3C029286.2 Cucumis melo HOM05D002444 ORTHO05D004748 4.2e-23 112.5 90 53.3
Ciclev10003857m.g Citrus clementina HOM05D002444 ORTHO05D004748 7.2e-23 111.7 94 50.0
C01p35210 Brassica napus HOM05D002444 ORTHO05D004748 1.2e-22 110.9 94 51.1
EL10Ac4g09827 Beta vulgaris HOM05D002444 ORTHO05D004748 2.3e-21 106.7 85 52.9
SHI00165 Sapria himalayana HOM05D002444 ORTHO05D004748 3.9e-21 105.9 114 45.6
HPP92_021761 Vanilla planifolia HOM05D002444 ORTHO05D004748 3.9e-21 105.9 95 45.3
HPP92_026765 Vanilla planifolia HOM05D002444 ORTHO05D004748 5.1e-21 105.5 99 43.4
SEGI_31666 Sequoiadendron giganteum HOM05D002444 ORTHO05D004748 6.7e-21 105.1 101 47.5
TPR.G32167 Trifolium pratense HOM05D002444 ORTHO05D004748 1.5e-20 104.0 129 67.4
FAN02G4223 Fragaria x ananassa HOM05D002444 ORTHO05D004748 1.9e-20 103.6 93 52.7
Lj6A687G28 Lonicera japonica HOM05D002444 ORTHO05D004748 2.8e-19 99.8 116 48.3
Os01g0253800 Oryza sativa ssp. japonica HOM05D002444 ORTHO05D004748 2.4e-18 96.7 97 42.3
Haze_04077 Corylus avellana HOM05D002444 ORTHO05D004748 1.5e-17 94.0 66 60.6
Zm00001eb127660 Zea mays HOM05D002444 ORTHO05D004748 5.9e-17 92.0 98 46.9
Zm00001eb014450 Zea mays HOM05D002444 ORTHO05D004748 5.0e-16 89.0 93 40.9
Zm00001eb285980 Zea mays HOM05D002444 ORTHO05D004748 1.9e-15 87.0 97 40.2
Os03g0304100 Oryza sativa ssp. japonica HOM05D002444 ORTHO05D004748 1.2e-14 84.3 93 39.8
Os05g0355900 Oryza sativa ssp. japonica HOM05D002444 ORTHO05D004748 1.6e-14 84.0 100 37.0
Cfa015454 Carpinus fangiana HOM05D002444 ORTHO05D004748 2.2e-11 73.6 52 63.5
Oeu056372.1 Olea europaea HOM05D002444 ORTHO05D004748 4.8e-11 72.4 64 53.1
HPP92_002049 Vanilla planifolia HOM05D040614 ORTHO05D036980 1.4e-10 70.9 88 36.4
Sabra05G0012900 Salix brachista HOM05D002444 ORTHO05D004748 1.5e-09 67.4 130 36.9
Lsat_1_v5_gn_9_13661 Lactuca sativa HOM05D008739 ORTHO05D010871 3.8e-08 62.8 108 30.6
Ciclev10003751m.g Citrus clementina HOM05D002444 ORTHO05D004748 1.9e-07 60.5 71 39.4
SMO361G0424 Selaginella moellendorffii HOM05D007017 ORTHO05D008784 1.9e-07 60.5 118 33.1
SMO361G0689 Selaginella moellendorffii HOM05D007017 ORTHO05D008784 2.5e-07 60.1 97 38.1
Thecc.10G185700 Theobroma cacao HOM05D008739 ORTHO05D010871 3.2e-07 59.7 89 38.2
Actinidia31640 Actinidia chinensis HOM05D008739 ORTHO05D010871 4.2e-07 59.3 73 38.4
HanXRQChr08g0230271 Helianthus annuus HOM05D008739 ORTHO05D010871 2.7e-06 56.6 105 33.3


User provided reference genes

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