Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.15G139100 Glycine max HOM05D004325 ORTHO05D005470 4.4e-96 354.8 196 100.0
Glyma.09G034400 Glycine max HOM05D004325 ORTHO05D005470 1.3e-92 343.2 196 94.4
VMungo0540G0568 Vigna mungo HOM05D004325 ORTHO05D005470 2.1e-90 335.9 196 92.9
Phvul.006G119000 Phaseolus vulgaris HOM05D004325 ORTHO05D005470 8.9e-89 330.5 182 94.5
Medtr2g033830 Medicago truncatula HOM05D004325 ORTHO05D005470 1.6e-85 319.7 192 89.6
arahy.Tifrunner.gnm1.ann1.NK7FC1 Arachis hypogaea HOM05D004325 ORTHO05D005470 2.0e-85 319.3 196 86.7
arahy.Tifrunner.gnm1.ann1.H88EK8 Arachis hypogaea HOM05D004325 ORTHO05D005470 2.7e-85 318.9 196 86.7
arahy.Tifrunner.gnm1.ann1.RG9184 Arachis hypogaea HOM05D004325 ORTHO05D005470 2.7e-85 318.9 196 86.7
Lj6g0013793 Lotus japonicus HOM05D004325 ORTHO05D005470 6.6e-84 314.3 196 85.2
Lalb_Chr12g0200831 Lupinus albus HOM05D004325 ORTHO05D005470 1.1e-83 313.5 196 85.2
TPR.G30807 Trifolium pratense HOM05D004325 ORTHO05D005470 1.1e-83 313.5 192 87.5
CANSAT78G0850 Cannabis sativa HOM05D004325 ORTHO05D005470 1.5e-83 313.2 196 85.2
Psat1g162400 Pisum sativum HOM05D004325 ORTHO05D005470 2.5e-83 312.4 191 88.0
Ca_00969_v3 Cicer arietinum L. HOM05D004325 ORTHO05D005470 5.6e-83 311.2 191 86.9
PSO421G0271 Papaver somniferum HOM05D004325 ORTHO05D005470 2.8e-82 308.9 195 83.6
PSO832G3679 Papaver somniferum HOM05D004325 ORTHO05D005470 2.8e-82 308.9 195 84.6
Haze_01324 Corylus avellana HOM05D004325 ORTHO05D005470 3.6e-82 308.5 192 85.4
Thecc.04G303800 Theobroma cacao HOM05D004325 ORTHO05D005470 3.6e-82 308.5 175 90.9
Cfa015290 Carpinus fangiana HOM05D004325 ORTHO05D005470 4.7e-82 308.1 192 85.4
MD16G1151300 Malus domestica HOM05D004325 ORTHO05D005470 4.7e-82 308.1 187 87.7
COL.COLO4_34588 Corchorus olitorius HOM05D004325 ORTHO05D005470 1.0e-81 307.0 192 84.4
Duzib151G0878 Durio zibethinus HOM05D004325 ORTHO05D005470 1.0e-81 307.0 190 85.8
PSO063G1209 Papaver somniferum HOM05D004325 ORTHO05D005470 2.3e-81 305.8 195 83.6
MD13G1150800 Malus domestica HOM05D004325 ORTHO05D005470 6.8e-81 304.3 176 88.6
Gohir.A01G034900 Gossypium hirsutum HOM05D004325 ORTHO05D005470 8.9e-81 303.9 195 83.1
TAR362G0217 Trochodendron aralioides HOM05D004325 ORTHO05D005470 8.9e-81 303.9 195 81.5
Duzib052G1161 Durio zibethinus HOM05D004325 ORTHO05D005470 1.2e-80 303.5 192 84.4
Eucgr.E02007 Eucalyptus grandis HOM05D004325 ORTHO05D005470 1.2e-80 303.5 190 84.2
Potri.008G103400 Populus trichocarpa HOM05D004325 ORTHO05D005470 1.2e-80 303.5 195 81.5
Prupe.1G115000 Prunus persica HOM05D004325 ORTHO05D005470 1.2e-80 303.5 187 85.6
Sabra08G0078100 Salix brachista HOM05D004325 ORTHO05D005470 1.5e-80 303.1 196 82.1
Cc03_g00680 Coffea canephora HOM05D004325 ORTHO05D005470 2.6e-80 302.4 192 82.8
Actinidia13352 Actinidia chinensis HOM05D004325 ORTHO05D005470 4.4e-80 301.6 191 84.3
Atru.chr4.3046 Acer truncatum HOM05D004325 ORTHO05D005470 5.8e-80 301.2 190 85.3
PGR004G2019 Punica granatum HOM05D004325 ORTHO05D005470 5.8e-80 301.2 195 83.1
Cpa.g.sc9.38 Carica papaya HOM05D004325 ORTHO05D005470 9.8e-80 300.4 188 84.0
Potri.010G147600 Populus trichocarpa HOM05D004325 ORTHO05D005470 1.3e-79 300.1 195 82.1
TAR633G1272 Trochodendron aralioides HOM05D004325 ORTHO05D005470 1.3e-79 300.1 182 84.1
Manes.03G206300 Manihot esculenta HOM05D004325 ORTHO05D005470 1.7e-79 299.7 196 81.6
CSS0027180 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D005470 2.2e-79 299.3 194 80.9
Ciclev10005911m.g Citrus clementina HOM05D004325 ORTHO05D005470 2.2e-79 299.3 194 81.4
Gohir.D01G023556 Gossypium hirsutum HOM05D004325 ORTHO05D005470 2.2e-79 299.3 195 82.6
Gorai.002G030800 Gossypium raimondii HOM05D004325 ORTHO05D005470 2.2e-79 299.3 195 82.6
Sc25g0003210 Simmondsia chinensis HOM05D004325 ORTHO05D005470 2.2e-79 299.3 194 80.9
PSO724G0368 Papaver somniferum HOM05D004325 ORTHO05D005470 3.7e-79 298.5 195 81.5
Peaxi162Scf00228g00059 Petunia axillaris HOM05D004325 ORTHO05D005470 3.7e-79 298.5 183 83.1
RcHm_v2.0_Chr4g0425791 Rosa chinensis HOM05D004325 ORTHO05D005470 6.4e-79 297.7 188 83.5
Dinv44270 Davidia involucrata HOM05D004325 ORTHO05D005470 1.4e-78 296.6 190 84.2
CARHR287830 Cardamine hirsuta HOM05D004325 ORTHO05D005470 2.4e-78 295.8 178 83.7
Migut.N00036 Erythranthe guttata HOM05D004325 ORTHO05D005470 5.4e-78 294.7 181 82.9
FvH4_4g20250 Fragaria vesca HOM05D004325 ORTHO05D005470 7.0e-78 294.3 188 82.4
MBI19_g03261_MAGBIO Magnolia biondii HOM05D004325 ORTHO05D005470 7.0e-78 294.3 177 84.7
Sed0024233 Sechium edule HOM05D004325 ORTHO05D005470 7.0e-78 294.3 197 81.2
TWI73G0086 Tripterygium wilfordii HOM05D004325 ORTHO05D005470 2.0e-77 292.7 193 79.8
ECA233G2476 Erigeron canadensis HOM05D004325 ORTHO05D005470 2.7e-77 292.4 194 78.9
THA.LOC104827099 Tarenaya hassleriana HOM05D004325 ORTHO05D005470 2.7e-77 292.4 180 82.8
ClCG05G006650 Citrullus lanatus HOM05D004325 ORTHO05D005470 4.6e-77 291.6 197 79.7
Hma1.2p1_0013F.1_g008360 Hydrangea macrophylla HOM05D004325 ORTHO05D005470 6.0e-77 291.2 178 83.1
Eucgr.D01575 Eucalyptus grandis HOM05D004325 ORTHO05D005470 1.0e-76 290.4 190 81.1
CSS0047955 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D005470 1.7e-76 289.7 177 83.6
AT5G49510 Arabidopsis thaliana HOM05D004325 ORTHO05D005470 3.0e-76 288.9 187 79.1
Sed0016650 Sechium edule HOM05D004325 ORTHO05D005470 3.0e-76 288.9 196 76.5
Thhalv10004957m.g Eutrema salsugineum HOM05D004325 ORTHO05D005470 5.0e-76 288.1 176 81.8
AL8G23260 Arabidopsis lyrata HOM05D004325 ORTHO05D005470 6.6e-76 287.7 187 78.6
CDE01G0033 Ceratophyllum demersum HOM05D004325 ORTHO05D005470 6.6e-76 287.7 176 82.4
CsaV3_3G015280 Cucumis sativus L. HOM05D004325 ORTHO05D005470 6.6e-76 287.7 193 80.3
Carub.0008s0936 Capsella rubella HOM05D004325 ORTHO05D005470 1.1e-75 287.0 176 81.8
Nitab4.5_0004165g0020 Nicotiana tabacum HOM05D004325 ORTHO05D005470 1.1e-75 287.0 176 82.4
Rhsim02G0002800 Rhododendron simsii HOM05D004325 ORTHO05D005470 1.1e-75 287.0 189 81.5
MSTRG.24825 Avicennia marina HOM05D004325 ORTHO05D005470 1.5e-75 286.6 185 81.6
Solyc05g053390.4 Solanum lycopersicum HOM05D004325 ORTHO05D005470 1.9e-75 286.2 173 83.2
Sopen05g031900 Solanum pennellii HOM05D004325 ORTHO05D005470 1.9e-75 286.2 173 83.2
Aa31LG11G8140 Aethionema arabicum HOM05D004325 ORTHO05D005470 2.5e-75 285.8 197 77.7
Os12g0562900 Oryza sativa ssp. japonica HOM05D004325 ORTHO05D005470 4.3e-75 285.0 177 81.4
Sp2g19810 Schrenkiella parvula HOM05D004325 ORTHO05D005470 4.3e-75 285.0 182 80.2
SpUn0021_0040 Schrenkiella parvula HOM05D004325 ORTHO05D005470 4.3e-75 285.0 182 80.2
Nitab4.5_0000647g0250 Nicotiana tabacum HOM05D004325 ORTHO05D005470 5.6e-75 284.6 176 81.8
Hund03133 Selenicereus undatus HOM05D004325 ORTHO05D005470 5.6e-75 284.6 180 81.1
PGSC0003DMG400027209 Solanum tuberosum HOM05D004325 ORTHO05D005470 7.3e-75 284.3 175 82.3
BcaB04g19615 Brassica carinata HOM05D004325 ORTHO05D005470 1.2e-74 283.5 190 76.3
AUR62039261 Chenopodium quinoa HOM05D004325 ORTHO05D005470 1.6e-74 283.1 195 76.9
SGA_v2.0_scaffold528G52737 Striga asiatica HOM05D004325 ORTHO05D005470 1.6e-74 283.1 207 74.4
BcaC04g23736 Brassica carinata HOM05D004325 ORTHO05D005470 2.8e-74 282.3 188 76.6
C09p05230 Brassica napus HOM05D004325 ORTHO05D005470 2.8e-74 282.3 188 76.6
BraA09t36122Z Brassica rapa HOM05D004325 ORTHO05D005470 2.8e-74 282.3 188 76.6
A09p04850 Brassica napus HOM05D004325 ORTHO05D005470 4.7e-74 281.6 188 76.6
Nitab4.5_0000177g0050 Nicotiana tabacum HOM05D004325 ORTHO05D005470 4.7e-74 281.6 192 77.6
AUR62016229 Chenopodium quinoa HOM05D004325 ORTHO05D005470 6.2e-74 281.2 181 80.1
unitig_0.g2580 Utricularia gibba HOM05D004325 ORTHO05D005470 6.2e-74 281.2 184 77.7
ATR0693G272 Amborella trichopoda HOM05D004325 ORTHO05D005470 8.0e-74 280.8 176 81.8
Lsat_1_v5_gn_1_117981 Lactuca sativa HOM05D004325 ORTHO05D005470 8.0e-74 280.8 185 80.0
THA.LOC104802708 Tarenaya hassleriana HOM05D004325 ORTHO05D005470 1.1e-73 280.4 196 76.0
Nitab4.5_0000891g0010 Nicotiana tabacum HOM05D004325 ORTHO05D005470 3.1e-73 278.9 192 77.1
Ah.13g071390 Amaranthus hybridus HOM05D004325 ORTHO05D005470 4.0e-73 278.5 183 78.7
Hund11985 Selenicereus undatus HOM05D004325 ORTHO05D005470 5.2e-73 278.1 181 77.3
FAN12G3971 Fragaria x ananassa HOM05D004325 ORTHO05D005470 6.8e-73 277.7 221 70.1
HanXRQChr17g0569361 Helianthus annuus HOM05D004325 ORTHO05D005470 6.8e-73 277.7 183 78.7
Zm00001eb136920 Zea mays HOM05D004325 ORTHO05D005470 6.8e-73 277.7 177 80.2
vmacro15176 Vaccinium macrocarpon HOM05D004325 ORTHO05D005470 1.2e-72 276.9 232 69.0
A06p38330 Brassica napus HOM05D004325 ORTHO05D005470 1.5e-72 276.6 182 78.0
C07p39920 Brassica napus HOM05D004325 ORTHO05D005470 1.5e-72 276.6 182 78.0
BolC7t44524H Brassica oleracea HOM05D004325 ORTHO05D005470 1.5e-72 276.6 182 78.0
BraA06t26747Z Brassica rapa HOM05D004325 ORTHO05D005470 1.5e-72 276.6 182 78.0
Zm00001eb028520 Zea mays HOM05D004325 ORTHO05D005470 1.5e-72 276.6 174 81.0
HPP92_027563 Vanilla planifolia HOM05D004325 ORTHO05D005470 3.4e-72 275.4 181 80.1
Sabra10G0113800 Salix brachista HOM05D004325 ORTHO05D005470 4.4e-72 275.0 239 66.1
FAN07G0536 Fragaria x ananassa HOM05D004325 ORTHO05D005470 3.7e-71 271.9 230 67.0
Aqoxy3G01635 Aquilegia oxysepala HOM05D004325 ORTHO05D005470 1.6e-69 266.5 180 77.2
Lj3A833G34 Lonicera japonica HOM05D004325 ORTHO05D005470 6.6e-68 261.2 154 88.3
TWI09G1034 Tripterygium wilfordii HOM05D004325 ORTHO05D005470 4.3e-67 258.5 195 72.3
SalBow5G2618 Salvia bowleyana HOM05D004325 ORTHO05D005470 7.3e-67 257.7 157 84.7
BolC9t53449H Brassica oleracea HOM05D004325 ORTHO05D005470 4.7e-66 255.0 248 58.1
Nn3g21742 Nelumbo nucifera HOM05D004325 ORTHO05D005470 1.2e-64 250.4 195 71.8
EL10Ac3g05527 Beta vulgaris HOM05D004325 ORTHO05D005470 3.4e-64 248.8 169 78.1
TPR.G28959 Trifolium pratense HOM05D004325 ORTHO05D005470 8.3e-63 244.2 141 91.5
Eucgr.E01999 Eucalyptus grandis HOM05D004325 ORTHO05D005470 1.2e-61 240.4 190 71.1
SEGI_09014 Sequoiadendron giganteum HOM05D004325 ORTHO05D005470 2.1e-61 239.6 179 67.6
Mapoly0057s0039 Marchantia polymorpha HOM05D004325 ORTHO05D005470 7.8e-61 237.7 171 69.6
SMO116G0307 Selaginella moellendorffii HOM05D004325 ORTHO05D005470 8.6e-60 234.2 168 69.6
GSVIVG01034969001 Vitis vinifera HOM05D004325 ORTHO05D005470 4.3e-59 231.9 135 89.6
Oeu001162.1 Olea europaea HOM05D004325 ORTHO05D005470 1.2e-58 230.3 136 86.0
CAN.G945.3 Capsicum annuum HOM05D004325 ORTHO05D005470 8.1e-58 227.6 137 82.5
CiPaw.01G136700 Carya illinoinensis HOM05D004325 ORTHO05D005470 3.4e-56 222.2 130 87.7
Pp3c8_18130 Physcomitrium patens HOM05D004325 ORTHO05D005470 5.8e-56 221.5 177 64.4
Lalb_Chr13g0298551 Lupinus albus HOM05D004325 ORTHO05D005470 9.9e-56 220.7 136 84.6
AagrBONN_evm.TU.Sc2ySwM_344.4436 Anthoceros agrestis HOM05D004325 ORTHO05D005470 2.2e-55 219.5 172 61.6
Eucgr.E01982 Eucalyptus grandis HOM05D004325 ORTHO05D005470 7.3e-51 204.5 123 85.4
MELO3C006723.2 Cucumis melo HOM05D004325 ORTHO05D005470 1.6e-50 203.4 145 75.2
CiPaw.02G073600 Carya illinoinensis HOM05D004325 ORTHO05D005470 4.7e-50 201.8 200 61.0
CDE12G0495 Ceratophyllum demersum HOM05D004325 ORTHO05D005470 4.7e-50 201.8 124 81.5
HPP92_017247 Vanilla planifolia HOM05D004325 ORTHO05D005470 7.6e-48 194.5 118 85.6
Sopen01g024490 Solanum pennellii HOM05D004325 ORTHO05D005470 9.3e-46 187.6 110 87.3
MSTRG.3849 Avicennia marina HOM05D004325 ORTHO05D005470 1.2e-45 187.2 130 73.8
Eucgr.D01598 Eucalyptus grandis HOM05D004325 ORTHO05D005470 1.5e-40 170.2 109 80.7
Actinidia18462 Actinidia chinensis HOM05D004325 ORTHO05D005470 1.3e-39 167.2 117 76.1
Eucgr.D01586 Eucalyptus grandis HOM05D004325 ORTHO05D005470 8.4e-39 164.5 102 79.4
QL06p012738 Quercus lobata HOM05D004325 ORTHO05D005470 2.4e-38 162.9 95 84.2
PRCOL_00000812 Prasinoderma coloniale HOM05D004325 ORTHO05D005470 5.6e-35 151.8 166 47.6
HPP92_017255 Vanilla planifolia HOM05D004325 ORTHO05D005470 4.8e-34 148.7 88 87.5
Eucgr.D01580 Eucalyptus grandis HOM05D004325 ORTHO05D005470 1.8e-33 146.7 93 78.5
MCO08G322 Micromonas commoda HOM05D004325 ORTHO05D005470 2.0e-32 143.3 162 45.7
QL06p012730 Quercus lobata HOM05D004325 ORTHO05D005470 2.0e-32 143.3 98 80.6
Dinv15146 Davidia involucrata HOM05D004325 ORTHO05D005470 3.8e-31 139.0 102 72.5
DCAR_026989 Daucus carota HOM05D004325 ORTHO05D005470 2.5e-30 136.3 95 78.9
Haze_26161 Corylus avellana HOM05D004325 ORTHO05D005470 3.2e-30 136.0 170 42.4
Eucgr.D01581 Eucalyptus grandis HOM05D004325 ORTHO05D005470 5.5e-30 135.2 81 84.0
Glyma.07G238200 Glycine max HOM05D004325 ORTHO05D005470 1.0e-28 131.0 75 89.3
Glyma.17G035301 Glycine max HOM05D004325 ORTHO05D005470 1.9e-27 126.7 101 70.3
Cre06.g261650 Chlamydomonas reinhardtii HOM05D004325 ORTHO05D005470 4.3e-27 125.6 184 35.9
Eucgr.D01577 Eucalyptus grandis HOM05D004325 ORTHO05D005470 4.3e-27 125.6 93 71.0
CBR_g12436 Chara braunii HOM05D004325 ORTHO05D005470 2.1e-26 123.2 93 63.4
MBI14_g36884_MAGBIO Magnolia biondii HOM05D004325 ORTHO05D005470 6.2e-26 121.7 104 64.4
Actinidia31558 Actinidia chinensis HOM05D004325 ORTHO05D005470 5.7e-19 98.6 63 77.8
Eucgr.E01978 Eucalyptus grandis HOM05D004325 ORTHO05D005470 1.7e-15 87.0 56 75.0
CSS0004484 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D022134 2.7e-13 79.7 111 46.8
Solyc01g058597.1 Solanum lycopersicum HOM05D004325 ORTHO05D005470 2.7e-13 79.7 46 82.6
CSS0039135 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D022134 7.9e-13 78.2 111 45.9
CSS0044452 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D022134 7.9e-13 78.2 111 45.9
CSS0031168 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D022134 3.0e-12 76.3 111 45.0
CSS0013046 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D022134 3.9e-12 75.9 111 45.0
TPR.G26018 Trifolium pratense HOM05D004325 ORTHO05D049290 3.3e-11 72.8 70 62.9
TPR.G25439 Trifolium pratense HOM05D004325 ORTHO05D005470 2.2e-10 70.1 114 44.7
Actinidia14254 Actinidia chinensis HOM05D004325 ORTHO05D005470 2.2e-07 60.1 36 80.6


User provided reference genes

Program Settings