Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.15G131700 Glycine max HOM05D004109 ORTHO05D005867 1.1e-267 926.0 472 100.0
Glyma.09G025600 Glycine max HOM05D004109 ORTHO05D005867 4.7e-261 904.0 472 97.7
Phvul.006G126900 Phaseolus vulgaris HOM05D004109 ORTHO05D005867 3.2e-254 881.3 472 93.9
VMungo0540G0358 Vigna mungo HOM05D004109 ORTHO05D005867 8.8e-244 846.7 481 90.0
Lj6g0008240 Lotus japonicus HOM05D004109 ORTHO05D005867 2.0e-240 835.5 474 90.5
Lalb_Chr20g0120131 Lupinus albus HOM05D004109 ORTHO05D005867 3.6e-237 824.7 481 87.7
Psat1g166680 Pisum sativum HOM05D004109 ORTHO05D005867 2.2e-234 815.5 483 86.7
Ca_00854_v3 Cicer arietinum L. HOM05D004109 ORTHO05D005867 1.1e-233 813.1 481 88.1
Medtr2g030520 Medicago truncatula HOM05D004109 ORTHO05D005867 3.0e-231 805.1 480 86.5
arahy.Tifrunner.gnm1.ann1.E4EMQ7 Arachis hypogaea HOM05D004109 ORTHO05D005867 6.2e-229 797.3 490 85.5
arahy.Tifrunner.gnm1.ann1.X3TBAN Arachis hypogaea HOM05D004109 ORTHO05D005867 4.6e-224 781.2 515 81.2
FvH4_3g10270 Fragaria vesca HOM05D004109 ORTHO05D005867 9.5e-222 773.5 438 88.1
arahy.Tifrunner.gnm1.ann1.S2DTMZ Arachis hypogaea HOM05D004109 ORTHO05D005867 1.5e-219 766.1 436 87.4
arahy.Tifrunner.gnm1.ann1.NJCF43 Arachis hypogaea HOM05D004256 ORTHO05D005224 7.5e-219 763.8 436 87.2
Prupe.4G091700 Prunus persica HOM05D004109 ORTHO05D005867 1.3e-218 763.1 436 86.9
Ciclev10015058m.g Citrus clementina HOM05D004109 ORTHO05D005867 4.9e-218 761.1 439 86.3
Potri.001G465300 Populus trichocarpa HOM05D004109 ORTHO05D005867 4.9e-218 761.1 437 86.0
RcHm_v2.0_Chr5g0016531 Rosa chinensis HOM05D004109 ORTHO05D005867 1.9e-217 759.2 434 87.1
MD05G1271100 Malus domestica HOM05D004109 ORTHO05D005867 2.4e-217 758.8 434 87.3
Cfa002071 Carpinus fangiana HOM05D004109 ORTHO05D005867 3.2e-217 758.4 439 86.3
MD10G1251700 Malus domestica HOM05D004109 ORTHO05D005867 1.2e-216 756.5 438 86.1
Lj4g0018356 Lotus japonicus HOM05D004109 ORTHO05D005867 2.1e-216 755.7 435 86.0
PGR083G1643 Punica granatum HOM05D004109 ORTHO05D005867 2.7e-216 755.4 446 83.9
Hma1.2p1_0892F.1_g233350 Hydrangea macrophylla HOM05D004109 ORTHO05D005867 3.5e-216 755.0 461 83.1
GSVIVG01001692001 Vitis vinifera HOM05D004109 ORTHO05D005867 1.0e-215 753.4 439 85.6
Potri.011G163400 Populus trichocarpa HOM05D004109 ORTHO05D005867 1.3e-215 753.1 483 78.9
Sabra11G0141200 Salix brachista HOM05D004109 ORTHO05D005867 1.7e-215 752.7 437 84.9
Glyma.08G081500 Glycine max HOM05D004109 ORTHO05D005867 3.0e-215 751.9 435 85.3
MSTRG.20474 Avicennia marina HOM05D004109 ORTHO05D005867 3.9e-215 751.5 463 81.4
EL10Ac1g00099 Beta vulgaris HOM05D004109 ORTHO05D005867 3.9e-215 751.5 450 83.1
Duzib160G0240 Durio zibethinus HOM05D004109 ORTHO05D005867 3.9e-215 751.5 439 85.0
COL.COLO4_13719 Corchorus olitorius HOM05D004109 ORTHO05D005867 5.1e-215 751.1 439 85.2
FAN11G0285 Fragaria x ananassa HOM05D001785 ORTHO05D001933 5.1e-215 751.1 449 84.9
CANSAT01G0468 Cannabis sativa HOM05D004109 ORTHO05D005867 6.6e-215 750.7 439 84.3
Eucgr.D00111 Eucalyptus grandis HOM05D004109 ORTHO05D005867 6.6e-215 750.7 439 84.5
Gohir.A13G125500 Gossypium hirsutum HOM05D004109 ORTHO05D005867 1.1e-214 750.0 451 84.3
Gohir.D13G129300 Gossypium hirsutum HOM05D004109 ORTHO05D005867 1.1e-214 750.0 439 85.9
THA.LOC104810828 Tarenaya hassleriana HOM05D004109 ORTHO05D005867 1.9e-214 749.2 455 81.1
CSS0030683 Camellia sinensis var. sinensis HOM05D004109 ORTHO05D005867 2.5e-214 748.8 432 86.6
Solyc02g071890.3 Solanum lycopersicum HOM05D004109 ORTHO05D005867 2.5e-214 748.8 440 85.5
Atru.chr12.891 Acer truncatum HOM05D004109 ORTHO05D005867 3.3e-214 748.4 435 85.1
AUR62000071 Chenopodium quinoa HOM05D004109 ORTHO05D005867 3.3e-214 748.4 447 82.8
Gorai.013G145300 Gossypium raimondii HOM05D004109 ORTHO05D005867 3.3e-214 748.4 439 85.6
TAR369G0339 Trochodendron aralioides HOM05D004109 ORTHO05D005867 5.6e-214 747.7 436 85.8
Phvul.002G198300 Phaseolus vulgaris HOM05D004109 ORTHO05D005867 1.2e-213 746.5 435 84.1
Migut.B01142 Erythranthe guttata HOM05D004109 ORTHO05D005867 1.6e-213 746.1 437 84.4
BcaNung04636 Brassica carinata HOM05D004109 ORTHO05D005867 2.1e-213 745.7 446 83.0
CSS0039858 Camellia sinensis var. sinensis HOM05D004109 ORTHO05D005867 4.7e-213 744.6 435 85.7
ClCG03G008220 Citrullus lanatus HOM05D004109 ORTHO05D005867 8.1e-213 743.8 439 84.3
Nitab4.5_0001778g0190 Nicotiana tabacum HOM05D004109 ORTHO05D005867 8.1e-213 743.8 440 84.5
Cpa.g.sc139.36 Carica papaya HOM05D004109 ORTHO05D005867 1.1e-212 743.4 439 83.6
MBI02_g14218_MAGBIO Magnolia biondii HOM05D004109 ORTHO05D005867 1.1e-212 743.4 435 85.7
Manes.06G058300 Manihot esculenta HOM05D004109 ORTHO05D005867 1.1e-212 743.4 436 84.6
CiPaw.09G142500 Carya illinoinensis HOM05D004109 ORTHO05D005867 1.4e-212 743.0 480 79.4
Lj7A233T12 Lonicera japonica HOM05D004109 ORTHO05D005867 1.4e-212 743.0 445 83.4
Cc02_g32120 Coffea canephora HOM05D004109 ORTHO05D005867 1.8e-212 742.7 459 80.8
MELO3C002828.2 Cucumis melo HOM05D004109 ORTHO05D005867 1.8e-212 742.7 439 84.1
CARHR277790 Cardamine hirsuta HOM05D004109 ORTHO05D005867 2.4e-212 742.3 446 82.1
Thhalv10004035m.g Eutrema salsugineum HOM05D004109 ORTHO05D005867 3.1e-212 741.9 446 81.8
BraA09t36495Z Brassica rapa HOM05D004109 ORTHO05D005867 4.0e-212 741.5 458 80.1
AL8G41120 Arabidopsis lyrata HOM05D004109 ORTHO05D005867 5.2e-212 741.1 438 83.1
A09p08450 Brassica napus HOM05D004109 ORTHO05D005867 5.2e-212 741.1 458 80.1
CsaV3_1G037190 Cucumis sativus L. HOM05D004109 ORTHO05D005867 8.9e-212 740.3 439 83.4
Sopen02g020880 Solanum pennellii HOM05D004109 ORTHO05D005867 8.9e-212 740.3 435 85.5
CAN.G411.27 Capsicum annuum HOM05D004109 ORTHO05D005867 1.2e-211 740.0 440 84.3
THA.LOC104799477 Tarenaya hassleriana HOM05D004109 ORTHO05D005867 1.2e-211 740.0 441 82.5
DCAR_003019 Daucus carota HOM05D004109 ORTHO05D005867 1.5e-211 739.6 481 77.1
Rhsim07G0074000 Rhododendron simsii HOM05D004109 ORTHO05D005867 2.0e-211 739.2 447 82.8
Aa31LG1G12300 Aethionema arabicum HOM05D004109 ORTHO05D005867 2.6e-211 738.8 438 83.1
Ah.05g178270 Amaranthus hybridus HOM05D004109 ORTHO05D005867 2.6e-211 738.8 452 81.9
A06p30510 Brassica napus HOM05D004109 ORTHO05D005867 3.4e-211 738.4 443 82.2
BraA06t26000Z Brassica rapa HOM05D004109 ORTHO05D005867 3.4e-211 738.4 443 82.2
Nitab4.5_0001793g0060 Nicotiana tabacum HOM05D004109 ORTHO05D005867 4.4e-211 738.0 440 83.9
Sed0019466 Sechium edule HOM05D004109 ORTHO05D005867 5.8e-211 737.6 439 83.4
AT5G63890 Arabidopsis thaliana HOM05D004109 ORTHO05D005867 7.6e-211 737.3 445 82.0
C03p62550 Brassica napus HOM05D004109 ORTHO05D005867 9.9e-211 736.9 443 81.9
BolC3t18512H Brassica oleracea HOM05D004109 ORTHO05D005867 9.9e-211 736.9 443 81.9
Carub.0008s2466 Capsella rubella HOM05D004109 ORTHO05D005867 1.3e-210 736.5 440 83.0
SGA_v2.0_scaffold114G32023 Striga asiatica HOM05D004109 ORTHO05D005867 1.3e-210 736.5 434 83.2
BcaB02g09768 Brassica carinata HOM05D004109 ORTHO05D005867 1.7e-210 736.1 443 81.9
BcaC01g02640 Brassica carinata HOM05D004109 ORTHO05D005867 1.7e-210 736.1 443 81.9
Nn7g37134 Nelumbo nucifera HOM05D004109 ORTHO05D005867 2.2e-210 735.7 446 82.3
Sed0002561 Sechium edule HOM05D004109 ORTHO05D005867 3.8e-210 734.9 438 83.3
HanXRQChr07g0201181 Helianthus annuus HOM05D004109 ORTHO05D005867 4.9e-210 734.6 437 83.1
Sp2g26950 Schrenkiella parvula HOM05D004109 ORTHO05D005867 6.4e-210 734.2 442 82.4
Hund27096 Selenicereus undatus HOM05D004109 ORTHO05D005867 8.4e-210 733.8 439 82.9
BcaC04g23349 Brassica carinata HOM05D004109 ORTHO05D005867 1.1e-209 733.4 446 81.2
BolC9t53868H Brassica oleracea HOM05D004109 ORTHO05D005867 1.1e-209 733.4 446 81.2
Lsat_1_v5_gn_2_116541 Lactuca sativa HOM05D004109 ORTHO05D005867 1.1e-209 733.4 459 80.2
ECA238G2995 Erigeron canadensis HOM05D004109 ORTHO05D005867 1.9e-209 732.6 436 82.6
Thecc.10G182100 Theobroma cacao HOM05D004109 ORTHO05D005867 2.4e-209 732.3 439 83.1
PSO675G4088 Papaver somniferum HOM05D004109 ORTHO05D005867 5.4e-209 731.1 436 82.1
Sabra16G0315800 Salix brachista HOM05D004109 ORTHO05D005867 1.6e-208 729.6 449 81.5
CSS0036381 Camellia sinensis var. sinensis HOM05D004109 ORTHO05D005867 2.1e-208 729.2 435 84.6
QL08p023474 Quercus lobata HOM05D004109 ORTHO05D005867 2.1e-208 729.2 439 83.6
C09p09570 Brassica napus HOM05D004109 ORTHO05D005867 2.7e-208 728.8 446 80.7
Duzib192G0069 Durio zibethinus HOM05D004109 ORTHO05D005867 1.0e-207 726.9 435 83.2
FAN21G0038 Fragaria x ananassa HOM05D001785 ORTHO05D001933 8.7e-207 723.8 449 82.2
PSO675G5109 Papaver somniferum HOM05D004109 ORTHO05D005867 1.9e-206 722.6 451 79.4
HPP92_000958 Vanilla planifolia HOM05D004109 ORTHO05D005867 5.6e-206 721.1 441 81.2
Nitab4.5_0008572g0030 Nicotiana tabacum HOM05D004109 ORTHO05D005867 7.3e-206 720.7 427 84.1
Os01g0232700 Oryza sativa ssp. japonica HOM05D004109 ORTHO05D005867 9.6e-206 720.3 447 81.2
Aqoxy7G00406 Aquilegia oxysepala HOM05D004109 ORTHO05D005867 2.1e-205 719.2 441 81.0
FAN25G1737 Fragaria x ananassa HOM05D001785 ORTHO05D001933 2.8e-205 718.8 438 83.1
RcHm_v2.0_Chr7g0241131 Rosa chinensis HOM05D004109 ORTHO05D005867 2.8e-205 718.8 436 83.5
Cfa005415 Carpinus fangiana HOM05D004109 ORTHO05D005867 4.7e-205 718.0 447 81.4
ATR0810G187 Amborella trichopoda HOM05D004109 ORTHO05D005867 3.1e-204 715.3 431 82.4
CDE06G2252 Ceratophyllum demersum HOM05D004109 ORTHO05D005867 4.0e-204 714.9 452 78.8
FAN16G0137 Fragaria x ananassa HOM05D001785 ORTHO05D001933 9.0e-204 713.8 449 81.3
unitig_0.g2208 Utricularia gibba HOM05D004109 ORTHO05D005867 1.1e-201 706.8 431 80.3
vmacro13807 Vaccinium macrocarpon HOM05D004109 ORTHO05D005867 7.1e-201 704.1 430 81.6
TWI63G1440 Tripterygium wilfordii HOM05D004109 ORTHO05D005867 1.0e-199 700.3 461 78.1
CDE03G0162 Ceratophyllum demersum HOM05D004109 ORTHO05D005867 1.1e-198 696.8 437 78.9
SEGI_09299 Sequoiadendron giganteum HOM05D004109 ORTHO05D005867 1.3e-197 693.3 433 79.2
Sc26g0000620 Simmondsia chinensis HOM05D004109 ORTHO05D005867 1.2e-195 686.8 409 83.4
Nitab4.5_0003703g0080 Nicotiana tabacum HOM05D004109 ORTHO05D005867 3.3e-190 668.7 386 86.3
BcaNung04631 Brassica carinata HOM05D004109 ORTHO05D005867 5.8e-187 657.9 436 77.1
Pp3c25_2460 Physcomitrium patens HOM05D004109 ORTHO05D005867 1.9e-185 652.9 442 72.4
AagrBONN_evm.TU.Sc2ySwM_228.1565 Anthoceros agrestis HOM05D004109 ORTHO05D005867 1.8e-180 636.3 469 69.9
Mapoly0060s0093 Marchantia polymorpha HOM05D004109 ORTHO05D005867 2.0e-179 632.9 438 71.9
Pp3c16_4820 Physcomitrium patens HOM05D004109 ORTHO05D005867 2.6e-179 632.5 442 71.3
SMO137G0061 Selaginella moellendorffii HOM05D004109 ORTHO05D005867 6.7e-175 617.8 427 73.5
CBR_g8928 Chara braunii HOM05D004109 ORTHO05D005867 4.2e-169 598.6 430 69.8
Cre02.g077350 Chlamydomonas reinhardtii HOM05D004109 ORTHO05D005867 1.4e-167 593.6 427 69.8
PRCOL_00002586 Prasinoderma coloniale HOM05D004109 ORTHO05D005867 1.5e-166 590.1 441 68.9
AUR62019245 Chenopodium quinoa HOM05D004109 ORTHO05D005867 3.7e-165 585.5 350 82.6
vmacro23219 Vaccinium macrocarpon HOM05D004109 ORTHO05D005867 9.4e-161 570.9 477 66.0
MCO06G190 Micromonas commoda HOM05D004109 ORTHO05D005867 1.4e-159 567.0 428 68.7
CSS0014434 Camellia sinensis var. sinensis HOM05D004109 ORTHO05D005867 2.2e-149 533.1 318 84.3
Dinv23908 Davidia involucrata HOM05D004109 ORTHO05D005867 2.9e-146 522.7 315 82.9
TPR.G26361 Trifolium pratense HOM05D004109 ORTHO05D005867 1.5e-129 467.2 305 80.7
Haze_16420 Corylus avellana HOM05D004109 ORTHO05D005867 3.0e-119 433.0 310 74.2
VMungo0251G1323 Vigna mungo HOM05D004256 ORTHO05D005224 5.8e-118 428.7 258 81.8
SMO170G0053 Selaginella moellendorffii HOM05D004109 ORTHO05D005867 1.9e-116 423.7 330 68.8
Cfa023091 Carpinus fangiana HOM05D004109 ORTHO05D005867 7.8e-115 418.3 436 50.9
Zm00001eb059830 Zea mays HOM05D004109 ORTHO05D005867 1.3e-114 417.5 258 81.8
Peaxi162Scf00112g01722 Petunia axillaris HOM05D004109 ORTHO05D005867 1.6e-112 410.6 233 87.1
Migut.B01141 Erythranthe guttata HOM05D004109 ORTHO05D005867 1.4e-92 344.4 401 53.1
Peaxi162Scf00112g01719 Petunia axillaris HOM05D004109 ORTHO05D005867 9.6e-89 331.6 209 78.9
VMungo0251G3018 Vigna mungo HOM05D004109 ORTHO05D005867 1.8e-87 327.4 180 87.2
Haze_01914 Corylus avellana HOM05D004109 ORTHO05D005867 1.5e-86 324.3 178 89.3
Actinidia34688 Actinidia chinensis HOM05D004109 ORTHO05D005867 2.9e-85 320.1 201 80.1
Haze_01911 Corylus avellana HOM05D004109 ORTHO05D001172 4.3e-73 279.6 222 67.1
PSO675G6350 Papaver somniferum HOM05D004109 ORTHO05D005867 9.6e-73 278.5 185 75.1
Haze_27135 Corylus avellana HOM05D004109 ORTHO05D005867 2.3e-66 257.3 401 41.9
BolC8t51924H Brassica oleracea HOM05D004109 ORTHO05D005867 6.7e-66 255.8 217 63.1
C01p45280 Brassica napus HOM05D004109 ORTHO05D005867 3.3e-65 253.4 220 62.7
C03p60030 Brassica napus HOM05D004109 ORTHO05D005867 8.2e-64 248.8 217 61.8
Lsat_1_v5_gn_0_46200 Lactuca sativa HOM05D004109 ORTHO05D005867 1.4e-63 248.1 296 46.3
BolC3t15408H Brassica oleracea HOM05D004109 ORTHO05D005867 2.0e-62 244.2 242 57.0
TPR.G39866 Trifolium pratense HOM05D004109 ORTHO05D005867 6.5e-61 239.2 126 92.9
BcaC01g02810 Brassica carinata HOM05D004109 ORTHO05D005867 1.3e-58 231.5 215 58.6
CSS0037475 Camellia sinensis var. sinensis HOM05D004109 ORTHO05D005867 2.7e-51 207.2 116 86.2
SMO137G0105 Selaginella moellendorffii HOM05D004109 ORTHO05D019780 7.9e-43 179.1 188 56.4
CSS0025757 Camellia sinensis var. sinensis HOM05D004109 ORTHO05D005867 1.4e-39 168.3 92 88.0
PGSC0003DMG400028409 Solanum tuberosum HOM05D004109 ORTHO05D005867 5.9e-38 162.9 87 90.8
vmacro20533 Vaccinium macrocarpon HOM05D004109 ORTHO05D000800 4.8e-32 143.3 159 52.8
Lsat_1_v5_gn_0_43980 Lactuca sativa HOM05D004109 ORTHO05D005867 2.3e-26 124.4 133 45.1
vmacro20532 Vaccinium macrocarpon HOM05D004109 ORTHO05D426529 5.2e-26 123.2 141 53.9
vmacro21824 Vaccinium macrocarpon HOM05D004614 ORTHO05D005339 3.5e-22 110.5 125 51.2
BcaC09g48845 Brassica carinata HOM05D004109 ORTHO05D009034 1.0e-21 109.0 209 39.2
HanXRQChr17g0545961 Helianthus annuus HOM05D004109 ORTHO05D225632 1.7e-21 108.2 76 67.1
Lsat_1_v5_gn_2_130860 Lactuca sativa HOM05D004109 ORTHO05D019780 6.5e-21 106.3 67 77.6
Hma1.2p1_0258F.1_g104030 Hydrangea macrophylla HOM05D004109 ORTHO05D005867 5.5e-20 103.2 59 86.4
vmacro20529 Vaccinium macrocarpon HOM05D004109 ORTHO05D427059 5.7e-17 93.2 74 63.5
AagrBONN_evm.TU.Sc2ySwM_117.3019 Anthoceros agrestis HOM05D000719 ORTHO05D000569 8.3e-16 89.4 66 69.7
PSO063G0645 Papaver somniferum HOM05D004109 ORTHO05D019780 1.4e-15 88.6 57 77.2
arahy.Tifrunner.gnm1.ann1.P7LCDJ Arachis hypogaea HOM05D004109 ORTHO05D019780 7.7e-14 82.8 48 87.5
BolC3t18268H Brassica oleracea HOM05D004109 ORTHO05D005867 3.8e-13 80.5 45 86.7
arahy.Tifrunner.gnm1.ann1.V2D64V Arachis hypogaea HOM05D004109 ORTHO05D019780 5.0e-13 80.1 69 66.7
Glyma.20G022700 Glycine max HOM05D004109 ORTHO05D019780 4.7e-11 73.6 37 100.0
vmacro09568 Vaccinium macrocarpon HOM05D004109 ORTHO05D003511 1.0e-10 72.4 68 61.8
BolC3t18267H Brassica oleracea HOM05D004109 ORTHO05D019780 6.8e-10 69.7 46 73.9
Actinidia02690 Actinidia chinensis HOM05D004109 ORTHO05D054316 8.9e-10 69.3 49 71.4
arahy.Tifrunner.gnm1.ann1.G95B1D Arachis hypogaea HOM05D004109 ORTHO05D084004 1.7e-08 65.1 38 76.3
arahy.Tifrunner.gnm1.ann1.E8SK3Y Arachis hypogaea HOM05D004109 ORTHO05D084058 9.2e-07 59.3 34 79.4
SMO137G0306 Selaginella moellendorffii HOM05D004109 ORTHO05D377039 5.9e-06 56.6 31 77.4
vmacro07499 Vaccinium macrocarpon HOM05D004109 ORTHO05D426741 5.9e-06 56.6 51 62.7


User provided reference genes

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