Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.15G114900 Glycine max HOM05D007829 ORTHO05D009903 8.9e-145 516.9 263 100.0
Glyma.09G010400 Glycine max HOM05D007829 ORTHO05D009903 1.8e-124 449.5 262 88.9
VMungo0540G1426 Vigna mungo HOM05D007829 ORTHO05D009903 3.6e-101 372.1 264 73.5
Phvul.006G143000 Phaseolus vulgaris HOM05D007829 ORTHO05D009903 2.6e-99 365.9 266 73.7
Lj6g0010113 Lotus japonicus HOM05D007829 ORTHO05D009903 8.2e-82 307.8 269 65.1
Psat1g175960 Pisum sativum HOM05D007829 ORTHO05D009903 6.8e-68 261.5 270 58.5
Medtr2g025760 Medicago truncatula HOM05D007829 ORTHO05D009903 2.2e-66 256.5 254 61.0
arahy.Tifrunner.gnm1.ann1.G424KC Arachis hypogaea HOM05D007829 ORTHO05D009903 4.1e-65 252.3 270 54.1
Lalb_Chr15g0088001 Lupinus albus HOM05D007829 ORTHO05D009903 1.6e-61 240.4 263 52.9
TPR.G13103 Trifolium pratense HOM05D007829 ORTHO05D009903 9.5e-46 188.0 158 63.9
CiPaw.10G078200 Carya illinoinensis HOM05D007829 ORTHO05D009903 1.6e-45 187.2 243 44.0
TPR.G18790 Trifolium pratense HOM05D007829 ORTHO05D009903 6.4e-42 175.3 174 59.2
Ciclev10018278m.g Citrus clementina HOM05D007829 ORTHO05D009903 3.2e-41 172.9 156 54.5
CSS0014217 Camellia sinensis var. sinensis HOM05D007829 ORTHO05D009903 1.6e-40 170.6 265 41.1
Actinidia39272 Actinidia chinensis HOM05D007829 ORTHO05D009903 2.7e-40 169.9 254 39.4
Hma1.2p1_0657F.1_g197120 Hydrangea macrophylla HOM05D007829 ORTHO05D009903 2.7e-40 169.9 251 42.6
Rhsim02G0099400 Rhododendron simsii HOM05D007829 ORTHO05D009903 2.7e-40 169.9 244 39.8
Thecc.06G233800 Theobroma cacao HOM05D007829 ORTHO05D009903 6.0e-40 168.7 199 46.7
MD10G1332100 Malus domestica HOM05D007829 ORTHO05D009903 1.0e-39 167.9 216 44.0
Sc05g0009620 Simmondsia chinensis HOM05D007829 ORTHO05D009903 1.0e-39 167.9 185 46.5
Potri.016G013200 Populus trichocarpa HOM05D007829 ORTHO05D009903 2.3e-39 166.8 239 39.7
Prupe.4G010000 Prunus persica HOM05D007829 ORTHO05D009903 1.9e-38 163.7 202 44.1
Manes.08G071000 Manihot esculenta HOM05D007829 ORTHO05D009903 7.3e-38 161.8 253 39.1
Nn1g07397 Nelumbo nucifera HOM05D007829 ORTHO05D009903 1.6e-37 160.6 227 41.0
Dinv07407 Davidia involucrata HOM05D007829 ORTHO05D009903 8.1e-37 158.3 249 38.2
PSO675G8147 Papaver somniferum HOM05D007829 ORTHO05D009903 1.4e-36 157.5 203 41.9
Eucgr.D01411 Eucalyptus grandis HOM05D007829 ORTHO05D009903 6.8e-36 155.2 180 47.8
Aqoxy2G02687 Aquilegia oxysepala HOM05D007829 ORTHO05D009903 1.2e-35 154.5 165 44.2
TWI38G1785 Tripterygium wilfordii HOM05D007829 ORTHO05D009903 3.4e-35 152.9 265 38.1
Gorai.011G009700 Gossypium raimondii HOM05D007829 ORTHO05D009903 5.8e-35 152.1 265 38.1
PSO541G5076 Papaver somniferum HOM05D007829 ORTHO05D009903 5.8e-35 152.1 201 41.3
Gohir.A10G009200 Gossypium hirsutum HOM05D007829 ORTHO05D009903 2.9e-34 149.8 265 37.7
PGR004G1136 Punica granatum HOM05D007829 ORTHO05D009903 3.8e-34 149.4 201 40.8
COL.COLO4_31889 Corchorus olitorius HOM05D007829 ORTHO05D009903 4.9e-34 149.1 242 38.0
Gohir.D10G008900 Gossypium hirsutum HOM05D007829 ORTHO05D009903 4.9e-34 149.1 265 37.7
Cpa.g.sc75.113 Carica papaya HOM05D007829 ORTHO05D009903 1.9e-33 147.1 180 38.3
Migut.M01399 Erythranthe guttata HOM05D007829 ORTHO05D009903 6.0e-32 142.1 199 37.7
Sabra16G0002200 Salix brachista HOM05D007829 ORTHO05D009903 2.3e-31 140.2 213 38.0
FvH4_3g00940 Fragaria vesca HOM05D007829 ORTHO05D009903 1.1e-30 137.9 188 42.0
Cc00_g34400 Coffea canephora HOM05D007829 ORTHO05D009903 1.5e-30 137.5 134 50.0
CARHR229280 Cardamine hirsuta HOM05D007829 ORTHO05D009903 1.9e-30 137.1 175 38.3
Solyc11g012300.1 Solanum lycopersicum HOM05D007829 ORTHO05D009903 2.5e-30 136.7 187 38.0
SGA_v2.0_scaffold4G01872 Striga asiatica HOM05D007829 ORTHO05D009903 4.3e-30 136.0 205 36.1
TAR627G1193 Trochodendron aralioides HOM05D007829 ORTHO05D009903 4.3e-30 136.0 212 38.7
TAR627G0564 Trochodendron aralioides HOM05D007829 ORTHO05D009903 7.3e-30 135.2 252 37.3
FAN21G3309 Fragaria x ananassa HOM05D007829 ORTHO05D009903 8.1e-29 131.7 182 41.2
THA.LOC104813576 Tarenaya hassleriana HOM05D007829 ORTHO05D009903 1.4e-28 131.0 174 37.9
DCAR_004889 Daucus carota HOM05D003856 ORTHO05D004547 2.4e-28 130.2 145 43.4
Sabra16G0015800 Salix brachista HOM05D007829 ORTHO05D009903 5.2e-28 129.0 197 37.1
FAN25G0937 Fragaria x ananassa HOM05D007829 ORTHO05D009903 1.5e-27 127.5 195 40.0
PGSC0003DMG400013350 Solanum tuberosum HOM05D007829 ORTHO05D009903 4.4e-27 125.9 129 46.5
Sopen11g007080 Solanum pennellii HOM05D007829 ORTHO05D009903 7.6e-27 125.2 129 45.7
CANSAT56G1477 Cannabis sativa HOM05D007829 ORTHO05D009903 1.3e-26 124.4 214 37.4
QL05p069622 Quercus lobata HOM05D007829 ORTHO05D009903 1.7e-26 124.0 186 38.7
Duzib235G0645 Durio zibethinus HOM05D007829 ORTHO05D009903 6.4e-26 122.1 135 45.2
RcHm_v2.0_Chr5g0001461 Rosa chinensis HOM05D007829 ORTHO05D009903 1.9e-25 120.6 182 38.5
Oeu002768.1 Olea europaea HOM05D007829 ORTHO05D009903 3.2e-25 119.8 171 35.1
BolC1t01611H Brassica oleracea HOM05D007829 ORTHO05D009903 4.2e-25 119.4 171 35.7
Sp7g20500 Schrenkiella parvula HOM05D007829 ORTHO05D009903 4.2e-25 119.4 151 39.1
BcaC09g51100 Brassica carinata HOM05D007829 ORTHO05D009903 7.1e-25 118.6 171 35.7
MBI19_g06149_MAGBIO Magnolia biondii HOM05D007829 ORTHO05D009903 3.5e-24 116.3 120 44.2
BraA01t01318Z Brassica rapa HOM05D007829 ORTHO05D009903 4.6e-24 115.9 266 29.3
CDE11G1237 Ceratophyllum demersum HOM05D007829 ORTHO05D009903 6.0e-24 115.5 203 34.5
C01p16640 Brassica napus HOM05D007829 ORTHO05D009903 1.3e-23 114.4 273 29.3
A01p13730 Brassica napus HOM05D007829 ORTHO05D009903 3.0e-23 113.2 236 30.5
TAR629G0037 Trochodendron aralioides HOM05D007829 ORTHO05D009903 5.1e-23 112.5 131 42.0
Carub.0007s1893 Capsella rubella HOM05D007829 ORTHO05D009903 6.6e-23 112.1 150 36.7
AT4G22370 Arabidopsis thaliana HOM05D007829 ORTHO05D009903 8.7e-23 111.7 170 35.3
arahy.Tifrunner.gnm1.ann1.10XUBW Arachis hypogaea HOM05D007829 ORTHO05D009903 5.6e-22 109.0 145 49.7
ATR0712G049 Amborella trichopoda HOM05D007829 ORTHO05D009903 1.4e-20 104.4 137 39.4
Peaxi162Scf00352g00215 Petunia axillaris HOM05D007829 ORTHO05D009903 4.0e-20 102.8 153 35.9
Aa31LG6G4470 Aethionema arabicum HOM05D007829 ORTHO05D009903 5.8e-19 99.0 135 38.5
Thhalv10027004m.g Eutrema salsugineum HOM05D007829 ORTHO05D009903 5.8e-19 99.0 125 37.6
Sed0017863 Sechium edule HOM05D007829 ORTHO05D009903 7.6e-19 98.6 194 36.1
Cfa000096 Carpinus fangiana HOM05D007829 ORTHO05D009903 4.2e-17 92.8 134 41.0
AL7G31240 Arabidopsis lyrata HOM05D007829 ORTHO05D009903 4.6e-16 89.4 97 41.2
SalBow8G1028 Salvia bowleyana HOM05D007829 ORTHO05D009903 4.6e-16 89.4 170 34.1
unitig_5.g30996 Utricularia gibba HOM05D000093 ORTHO05D001309 4.3e-14 82.8 166 33.1
Sed0022750 Sechium edule HOM05D007829 ORTHO05D009903 5.5e-09 65.9 75 38.7
DCAR_000629 Daucus carota HOM05D002745 ORTHO05D002945 7.1e-09 65.5 140 30.7
unitig_748.g7131 Utricularia gibba HOM05D007829 ORTHO05D009903 2.3e-07 60.5 81 42.0
Sabra01G0075300 Salix brachista HOM05D002745 ORTHO05D002945 6.7e-07 58.9 130 27.7
Solyc11g012310.1 Solanum lycopersicum HOM05D007829 ORTHO05D009903 8.7e-07 58.5 86 33.7
Duzib205G0538 Durio zibethinus HOM05D002745 ORTHO05D002945 1.1e-06 58.2 148 27.7
CSS0032449 Camellia sinensis var. sinensis HOM05D002745 ORTHO05D002945 1.9e-06 57.4 128 28.9
Rhsim07G0088000 Rhododendron simsii HOM05D002745 ORTHO05D002945 3.3e-06 56.6 118 32.2


User provided reference genes

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