Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.15G107300 Glycine max HOM05D008677 ORTHO05D002434 8.3e-67 256.9 130 100.0
VMungo0540G1774 Vigna mungo HOM05D008677 ORTHO05D002434 3.5e-41 171.8 138 73.2
Ca_00651_v3 Cicer arietinum L. HOM05D008677 ORTHO05D002434 4.7e-38 161.4 137 67.2
TPR.G9935 Trifolium pratense HOM05D008677 ORTHO05D002434 1.1e-37 160.2 134 67.2
Medtr2g023010 Medicago truncatula HOM05D008677 ORTHO05D002434 1.4e-37 159.8 138 69.6
Phvul.006G150100 Phaseolus vulgaris HOM05D008677 ORTHO05D002434 2.6e-36 155.6 136 70.6
Psat1g181240 Pisum sativum HOM05D008677 ORTHO05D002434 1.7e-35 152.9 136 68.4
Glyma.13G205200 Glycine max HOM05D008677 ORTHO05D002434 3.9e-32 141.7 138 62.3
Lj6g0026915 Lotus japonicus HOM05D008677 ORTHO05D002434 3.9e-32 141.7 134 61.9
Glyma.17G014500 Glycine max HOM05D008677 ORTHO05D002434 8.6e-32 140.6 135 63.0
Glyma.17G014600 Glycine max HOM05D008677 ORTHO05D002434 9.5e-31 137.1 135 57.0
Lalb_Chr15g0087561 Lupinus albus HOM05D008677 ORTHO05D002434 2.8e-30 135.6 131 58.8
Glyma.07G259800 Glycine max HOM05D008677 ORTHO05D002434 8.1e-30 134.0 133 59.4
Glyma.17G014200 Glycine max HOM05D008677 ORTHO05D002434 1.8e-29 132.9 135 59.3
Glyma.07G259700 Glycine max HOM05D008677 ORTHO05D002434 2.0e-28 129.4 134 59.7
Glyma.17G014400 Glycine max HOM05D008677 ORTHO05D002434 2.6e-28 129.0 130 60.8
arahy.Tifrunner.gnm1.ann1.8P9XRD Arachis hypogaea HOM05D008677 ORTHO05D002434 3.4e-28 128.6 138 58.0
Lalb_Chr07g0177271 Lupinus albus HOM05D008677 ORTHO05D002434 3.4e-28 128.6 142 55.6
Ca_00640_v3 Cicer arietinum L. HOM05D008677 ORTHO05D002434 3.7e-27 125.2 110 66.4
Lj4g0005888 Lotus japonicus HOM05D008677 ORTHO05D002434 6.4e-27 124.4 137 55.5
Lalb_Chr07g0177261 Lupinus albus HOM05D008677 ORTHO05D002434 1.1e-26 123.6 149 51.7
Glyma.17G014100 Glycine max HOM05D008677 ORTHO05D002434 3.2e-26 122.1 140 55.7
Glyma.07G259900 Glycine max HOM05D008677 ORTHO05D002434 1.3e-24 116.7 133 54.1
Lalb_Chr18g0056321 Lupinus albus HOM05D008677 ORTHO05D002434 4.3e-23 111.7 130 51.5
VMungo1215G2206 Vigna mungo HOM05D008677 ORTHO05D002434 9.5e-23 110.5 130 52.3
VMungo1215G0105 Vigna mungo HOM05D008677 ORTHO05D002434 2.1e-22 109.4 130 53.8
arahy.Tifrunner.gnm1.ann1.W7920A Arachis hypogaea HOM05D008677 ORTHO05D002434 2.4e-21 105.9 127 52.8
Ca_21088_v3 Cicer arietinum L. HOM05D008677 ORTHO05D002434 8.9e-21 104.0 162 46.9
Ca_30196_v3 Cicer arietinum L. HOM05D008677 ORTHO05D002434 8.9e-21 104.0 162 46.9
Medtr4g132000 Medicago truncatula HOM05D008677 ORTHO05D002434 1.5e-20 103.2 142 49.3
VMungo1215G0276 Vigna mungo HOM05D008677 ORTHO05D002434 2.0e-20 102.8 130 52.3
arahy.Tifrunner.gnm1.ann1.PG586I Arachis hypogaea HOM05D008677 ORTHO05D002434 1.7e-19 99.8 145 46.9
Psat4g006720 Pisum sativum HOM05D008677 ORTHO05D002434 6.4e-19 97.8 144 48.6
Psat4g006760 Pisum sativum HOM05D008677 ORTHO05D002434 6.4e-19 97.8 144 48.6
Phvul.003G077900 Phaseolus vulgaris HOM05D008677 ORTHO05D002434 4.2e-18 95.1 130 48.5
Medtr4g132010 Medicago truncatula HOM05D008677 ORTHO05D002434 7.1e-18 94.4 145 47.6
TPR.G37017 Trifolium pratense HOM05D008677 ORTHO05D002434 9.2e-18 94.0 150 45.3
Phvul.003G078000 Phaseolus vulgaris HOM05D008677 ORTHO05D002434 1.2e-17 93.6 168 41.7
Lj4g0000389 Lotus japonicus HOM05D008677 ORTHO05D002434 2.1e-17 92.8 118 46.6
QL05p073377 Quercus lobata HOM05D003074 ORTHO05D002434 3.5e-17 92.0 137 45.3
TPR.G36987 Trifolium pratense HOM05D008677 ORTHO05D002434 6.0e-17 91.3 152 44.1
Psat4g006800 Pisum sativum HOM05D008677 ORTHO05D002434 1.7e-16 89.7 147 46.9
Psat4g006840 Pisum sativum HOM05D008677 ORTHO05D002434 1.9e-15 86.3 140 47.9
CiPaw.09G091000 Carya illinoinensis HOM05D003074 ORTHO05D002434 4.3e-15 85.1 149 43.6
MBI02_g07159_MAGBIO Magnolia biondii HOM05D003074 ORTHO05D002434 4.3e-15 85.1 127 42.5
ClCG03G004770 Citrullus lanatus HOM05D003074 ORTHO05D002434 9.6e-15 84.0 128 46.1
Hma1.2p1_0673F.1_g201330 Hydrangea macrophylla HOM05D003074 ORTHO05D002434 1.3e-14 83.6 137 43.8
Haze_06793 Corylus avellana HOM05D003074 ORTHO05D002434 1.6e-14 83.2 141 41.1
TAR626G1667 Trochodendron aralioides HOM05D003074 ORTHO05D002434 1.6e-14 83.2 134 41.0
Cfa000232 Carpinus fangiana HOM05D003074 ORTHO05D002434 2.1e-14 82.8 143 42.7
CiPaw.12G129500 Carya illinoinensis HOM05D003074 ORTHO05D002434 3.6e-14 82.0 142 41.5
Prupe.4G212400 Prunus persica HOM05D003074 ORTHO05D002434 3.6e-14 82.0 141 43.3
Sabra04G0008200 Salix brachista HOM05D003074 ORTHO05D002434 6.2e-14 81.3 135 40.7
Thecc.06G219600 Theobroma cacao HOM05D003074 ORTHO05D002434 6.2e-14 81.3 136 42.6
QL08p010341 Quercus lobata HOM05D003074 ORTHO05D002434 8.1e-14 80.9 135 41.5
Manes.03G129100 Manihot esculenta HOM05D003074 ORTHO05D002434 1.1e-13 80.5 132 43.9
Haze_09674 Corylus avellana HOM05D003074 ORTHO05D002434 1.4e-13 80.1 138 42.0
Psat4g007000 Pisum sativum HOM05D008677 ORTHO05D002434 1.4e-13 80.1 148 39.9
FvH4_3g22640 Fragaria vesca HOM05D003074 ORTHO05D002434 1.8e-13 79.7 149 40.3
Sed0010919 Sechium edule HOM05D003074 ORTHO05D002434 1.8e-13 79.7 130 44.6
CiPaw.11G189000 Carya illinoinensis HOM05D003074 ORTHO05D002434 3.1e-13 79.0 147 39.5
FAN11G2929 Fragaria x ananassa HOM05D003074 ORTHO05D002434 3.1e-13 79.0 149 40.3
FAN16G0504 Fragaria x ananassa HOM05D003074 ORTHO05D002434 6.9e-13 77.8 149 40.3
FAN25G2410 Fragaria x ananassa HOM05D003074 ORTHO05D002434 6.9e-13 77.8 149 40.3
Hma1.2p1_1222F.1_g268140 Hydrangea macrophylla HOM05D003074 ORTHO05D002434 6.9e-13 77.8 137 42.3
Oeu042936.1 Olea europaea HOM05D003074 ORTHO05D002434 2.0e-12 76.3 127 39.4
MSTRG.6917 Avicennia marina HOM05D003074 ORTHO05D002434 2.6e-12 75.9 131 42.7
Manes.16G007700 Manihot esculenta HOM05D003074 ORTHO05D002434 5.8e-12 74.7 139 42.4
COL.COLO4_09658 Corchorus olitorius HOM05D003074 ORTHO05D002434 7.6e-12 74.3 142 37.3
FAN21G2959 Fragaria x ananassa HOM05D003074 ORTHO05D002434 7.6e-12 74.3 150 39.3
TWI38G1886 Tripterygium wilfordii HOM05D003074 ORTHO05D002434 7.6e-12 74.3 131 39.7
Cc09_g09730 Coffea canephora HOM05D003074 ORTHO05D002434 9.9e-12 73.9 141 36.9
TAR624G1270 Trochodendron aralioides HOM05D003074 ORTHO05D002434 1.3e-11 73.6 130 38.5
Migut.M01767 Erythranthe guttata HOM05D003074 ORTHO05D002434 2.2e-11 72.8 135 38.5
Nn5g29371 Nelumbo nucifera HOM05D003074 ORTHO05D002434 2.2e-11 72.8 131 39.7
Potri.004G015900 Populus trichocarpa HOM05D003074 ORTHO05D002434 2.2e-11 72.8 135 38.5
PGR004G0474 Punica granatum HOM05D003074 ORTHO05D002434 2.2e-11 72.8 147 40.8
Thecc.07G037400 Theobroma cacao HOM05D003074 ORTHO05D002434 2.2e-11 72.8 139 38.8
Gorai.002G088300 Gossypium raimondii HOM05D003074 ORTHO05D002434 2.9e-11 72.4 127 40.9
Cfa020350 Carpinus fangiana HOM05D003074 ORTHO05D002434 3.8e-11 72.0 136 39.7
CiPaw.10G070500 Carya illinoinensis HOM05D003074 ORTHO05D002434 4.9e-11 71.6 148 41.9
MELO3C002460.2 Cucumis melo HOM05D003074 ORTHO05D002434 6.4e-11 71.2 129 41.9
Atru.chr2.3400 Acer truncatum HOM05D003074 ORTHO05D002434 8.4e-11 70.9 152 39.5
AUR62012700 Chenopodium quinoa HOM05D003074 ORTHO05D002434 8.4e-11 70.9 136 41.2
Dinv22264 Davidia involucrata HOM05D003074 ORTHO05D002434 8.4e-11 70.9 126 37.3
PSO541G1700 Papaver somniferum HOM05D003074 ORTHO05D002434 1.1e-10 70.5 135 37.0
PSO675G3145 Papaver somniferum HOM05D003074 ORTHO05D002434 1.1e-10 70.5 135 37.0
AUR62021958 Chenopodium quinoa HOM05D003074 ORTHO05D002434 1.4e-10 70.1 134 40.3
CsaV3_1G010810 Cucumis sativus L. HOM05D003074 ORTHO05D002434 1.4e-10 70.1 120 40.8
Dinv40751 Davidia involucrata HOM05D003074 ORTHO05D002434 1.4e-10 70.1 135 36.3
Gohir.A04G016900 Gossypium hirsutum HOM05D003074 ORTHO05D002434 1.4e-10 70.1 133 39.8
Potri.011G003100 Populus trichocarpa HOM05D003074 ORTHO05D002434 1.4e-10 70.1 138 39.9
Duzib192G0001 Durio zibethinus HOM05D003074 ORTHO05D002434 3.2e-10 68.9 133 44.4
Gohir.A01G079300 Gossypium hirsutum HOM05D003074 ORTHO05D002434 3.2e-10 68.9 127 39.4
Atru.chr2.3399 Acer truncatum HOM05D003074 ORTHO05D002434 4.2e-10 68.6 146 41.1
Duzib213G0915 Durio zibethinus HOM05D003074 ORTHO05D002434 7.1e-10 67.8 134 36.6
Duzib268G1655 Durio zibethinus HOM05D003074 ORTHO05D002434 9.3e-10 67.4 135 35.6
CANSAT56G1803 Cannabis sativa HOM05D003074 ORTHO05D002434 1.2e-09 67.0 162 40.1
Duzib235G0239 Durio zibethinus HOM05D003074 ORTHO05D002434 1.2e-09 67.0 132 42.4
Gohir.D05G369300 Gossypium hirsutum HOM05D003074 ORTHO05D002434 1.2e-09 67.0 133 39.1
Gorai.009G438000 Gossypium raimondii HOM05D003074 ORTHO05D002434 1.2e-09 67.0 133 39.1
Manes.17G038600 Manihot esculenta HOM05D003074 ORTHO05D002434 1.2e-09 67.0 140 37.9
Psat4g006960 Pisum sativum HOM05D008677 ORTHO05D002434 1.6e-09 66.6 88 51.1
MD11G1218800 Malus domestica HOM05D003074 ORTHO05D002434 2.1e-09 66.2 132 37.9
Cc05_g13710 Coffea canephora HOM05D003074 ORTHO05D002434 2.7e-09 65.9 145 35.2
Eucgr.E04060 Eucalyptus grandis HOM05D003074 ORTHO05D002434 3.5e-09 65.5 136 35.3
Eucgr.E04063 Eucalyptus grandis HOM05D003074 ORTHO05D002434 3.5e-09 65.5 135 38.5
THA.LOC104817856 Tarenaya hassleriana HOM05D003074 ORTHO05D002434 3.5e-09 65.5 142 37.3
Oeu007582.1 Olea europaea HOM05D003074 ORTHO05D002434 4.6e-09 65.1 127 38.6
Cc09_g01730 Coffea canephora HOM05D003074 ORTHO05D002434 6.0e-09 64.7 139 38.1
MD10G1320500 Malus domestica HOM05D003074 ORTHO05D002434 7.8e-09 64.3 147 41.5
RcHm_v2.0_Chr5g0039411 Rosa chinensis HOM05D003074 ORTHO05D002434 7.8e-09 64.3 147 35.4
Sed0007461 Sechium edule HOM05D003074 ORTHO05D002434 7.8e-09 64.3 131 35.9
Aqoxy1G02174 Aquilegia oxysepala HOM05D003074 ORTHO05D002434 1.0e-08 63.9 138 41.3
EL10Ac4g07810 Beta vulgaris HOM05D003074 ORTHO05D002434 1.0e-08 63.9 128 37.5
Eucgr.E04061 Eucalyptus grandis HOM05D003074 ORTHO05D002434 1.0e-08 63.9 135 37.8
Aa31LG6G3910 Aethionema arabicum HOM05D003074 ORTHO05D002434 1.7e-08 63.2 138 40.6
Ciclev10009680m.g Citrus clementina HOM05D003074 ORTHO05D002434 1.7e-08 63.2 136 37.5
Eucgr.E04066 Eucalyptus grandis HOM05D003074 ORTHO05D002434 1.7e-08 63.2 133 39.1
Eucgr.D01318 Eucalyptus grandis HOM05D003074 ORTHO05D002434 2.3e-08 62.8 143 37.8
Peaxi162Scf01097g00039 Petunia axillaris HOM05D003074 ORTHO05D002434 2.3e-08 62.8 128 35.9
MD05G1345200 Malus domestica HOM05D003074 ORTHO05D002434 3.0e-08 62.4 156 39.7
PGSC0003DMG400001089 Solanum tuberosum HOM05D003074 ORTHO05D002434 3.0e-08 62.4 133 35.3
Cpa.g.sc97.7 Carica papaya HOM05D003074 ORTHO05D002434 3.9e-08 62.0 129 38.0
Rhsim06G0216700 Rhododendron simsii HOM05D003074 ORTHO05D002434 3.9e-08 62.0 117 34.2
CSS0019776 Camellia sinensis var. sinensis HOM05D003074 ORTHO05D002434 5.1e-08 61.6 130 37.7
Eucgr.E04062 Eucalyptus grandis HOM05D003074 ORTHO05D002434 5.1e-08 61.6 136 34.6
Hma1.2p1_1091F.1_g255850 Hydrangea macrophylla HOM05D003074 ORTHO05D002434 5.1e-08 61.6 122 37.7
Gohir.A10G013000 Gossypium hirsutum HOM05D003074 ORTHO05D002434 6.6e-08 61.2 134 40.3
Gohir.D01G066350 Gossypium hirsutum HOM05D003074 ORTHO05D002434 6.6e-08 61.2 110 40.9
Migut.H01829 Erythranthe guttata HOM05D003074 ORTHO05D002434 8.7e-08 60.8 142 36.6
Eucgr.E04065 Eucalyptus grandis HOM05D003074 ORTHO05D002434 8.7e-08 60.8 136 34.6
MBI18_g22612_MAGBIO Magnolia biondii HOM05D003074 ORTHO05D002434 8.7e-08 60.8 128 35.9
DCAR_008152 Daucus carota HOM05D003074 ORTHO05D002434 1.1e-07 60.5 121 38.0
Sc17g0007340 Simmondsia chinensis HOM05D003074 ORTHO05D002434 1.1e-07 60.5 130 33.8
Nn1g03544 Nelumbo nucifera HOM05D003074 ORTHO05D002434 1.5e-07 60.1 128 35.9
PGR042G1468 Punica granatum HOM05D003074 ORTHO05D002434 1.5e-07 60.1 135 37.8
Gohir.D10G012900 Gossypium hirsutum HOM05D003074 ORTHO05D002434 1.9e-07 59.7 134 40.3
Gorai.011G014600 Gossypium raimondii HOM05D003074 ORTHO05D002434 1.9e-07 59.7 134 40.3
Hma1.2p1_1162F.1_g262580 Hydrangea macrophylla HOM05D003074 ORTHO05D002434 1.9e-07 59.7 124 36.3
Rhsim13G0146000 Rhododendron simsii HOM05D002761 ORTHO05D003351 2.5e-07 59.3 133 33.1
RhsimUnG0109700 Rhododendron simsii HOM05D003074 ORTHO05D002434 2.5e-07 59.3 133 33.1
THA.LOC104812967 Tarenaya hassleriana HOM05D003074 ORTHO05D002434 2.5e-07 59.3 139 36.7
TAR624G0488 Trochodendron aralioides HOM05D003074 ORTHO05D002434 2.5e-07 59.3 116 35.3
Actinidia35342 Actinidia chinensis HOM05D003074 ORTHO05D002434 3.3e-07 58.9 116 37.1
Eucgr.F03465 Eucalyptus grandis HOM05D003074 ORTHO05D002434 3.3e-07 58.9 138 37.0
FAN08G3684 Fragaria x ananassa HOM05D003074 ORTHO05D002434 3.3e-07 58.9 136 34.6
FAN25G1645 Fragaria x ananassa HOM05D003074 ORTHO05D002434 3.3e-07 58.9 136 34.6
Manes.15G072100 Manihot esculenta HOM05D003074 ORTHO05D002434 3.3e-07 58.9 134 36.6
FAN01G1682 Fragaria x ananassa HOM05D003074 ORTHO05D002434 4.3e-07 58.5 136 34.6
FAN26G1625 Fragaria x ananassa HOM05D003074 ORTHO05D002434 4.3e-07 58.5 138 34.8
PGR031G1144 Punica granatum HOM05D003074 ORTHO05D002434 4.3e-07 58.5 130 36.9
RcHm_v2.0_Chr5g0003291 Rosa chinensis HOM05D003074 ORTHO05D002434 4.3e-07 58.5 138 35.5
Lalb_Chr15g0081141 Lupinus albus HOM05D003074 ORTHO05D002434 7.3e-07 57.8 67 50.7
TAR627G0593 Trochodendron aralioides HOM05D003074 ORTHO05D002434 7.3e-07 57.8 113 39.8
Sed0026688 Sechium edule HOM05D003074 ORTHO05D002434 9.6e-07 57.4 131 36.6
Ah.04g165880 Amaranthus hybridus HOM05D003074 ORTHO05D002434 1.6e-06 56.6 128 32.8
AUR62015774 Chenopodium quinoa HOM05D003074 ORTHO05D002434 1.6e-06 56.6 127 34.6
DCAR_004216 Daucus carota HOM05D003074 ORTHO05D002434 1.6e-06 56.6 150 35.3
TWI38G1232 Tripterygium wilfordii HOM05D003074 ORTHO05D002434 1.6e-06 56.6 154 35.1
AUR62020444 Chenopodium quinoa HOM05D003074 ORTHO05D002434 2.1e-06 56.2 127 34.6
Lsat_1_v5_gn_9_93960 Lactuca sativa HOM05D003074 ORTHO05D002434 2.1e-06 56.2 128 35.2
Atru.chr10.2213 Acer truncatum HOM05D003074 ORTHO05D002434 2.8e-06 55.8 74 48.6
ClCG05G014310 Citrullus lanatus HOM05D003074 ORTHO05D002434 3.6e-06 55.5 131 33.6
CDE05G1751 Ceratophyllum demersum HOM05D003074 ORTHO05D002434 4.8e-06 55.1 132 34.1
CDE05G3459 Ceratophyllum demersum HOM05D003074 ORTHO05D002434 4.8e-06 55.1 132 34.1
AUR62020442 Chenopodium quinoa HOM05D003074 ORTHO05D002434 4.8e-06 55.1 129 31.8
Eucgr.E04064 Eucalyptus grandis HOM05D003074 ORTHO05D002434 4.8e-06 55.1 136 36.8
FvH4_3g02220 Fragaria vesca HOM05D003074 ORTHO05D002434 4.8e-06 55.1 136 33.8
RhsimUnG0250800 Rhododendron simsii HOM05D003074 ORTHO05D002434 4.8e-06 55.1 127 34.6
Duzib160G0150 Durio zibethinus HOM05D003074 ORTHO05D002434 6.2e-06 54.7 129 39.5
MBI02_g07158_MAGBIO Magnolia biondii HOM05D003074 ORTHO05D002434 6.2e-06 54.7 84 40.5
AUR62020443 Chenopodium quinoa HOM05D003074 ORTHO05D002434 8.1e-06 54.3 130 32.3


User provided reference genes

Program Settings