Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.15G094000 Glycine max HOM05D007839 ORTHO05D009924 1.6e-124 449.5 247 100.0
Phvul.006G164900 Phaseolus vulgaris HOM05D007839 ORTHO05D009924 4.4e-53 212.2 244 52.0
Glyma.13G218176 Glycine max HOM05D007839 ORTHO05D009924 1.3e-33 147.5 134 64.2
Medtr2g019410 Medicago truncatula HOM05D007839 ORTHO05D009924 1.7e-28 130.6 237 38.4
VMungo0540G1711 Vigna mungo HOM05D007839 ORTHO05D009924 1.4e-27 127.5 179 47.5
arahy.Tifrunner.gnm1.ann1.EDFF2E Arachis hypogaea HOM05D007839 ORTHO05D009924 4.2e-27 125.9 179 44.7
TWI73G0350 Tripterygium wilfordii HOM05D007839 ORTHO05D009924 3.5e-26 122.9 189 42.9
CiPaw.09G123500 Carya illinoinensis HOM05D007839 ORTHO05D009924 2.5e-24 116.7 150 49.3
Manes.17G069900 Manihot esculenta HOM05D007839 ORTHO05D009924 2.1e-23 113.6 155 49.0
TWI73G0663 Tripterygium wilfordii HOM05D007839 ORTHO05D009924 2.4e-22 110.2 190 39.5
Cfa000944 Carpinus fangiana HOM05D007839 ORTHO05D009924 1.5e-21 107.5 144 48.6
Ciclev10017838m.g Citrus clementina HOM05D007839 ORTHO05D009924 1.5e-21 107.5 144 47.9
Atru.chr10.1228 Acer truncatum HOM05D007839 ORTHO05D009924 1.3e-20 104.4 153 42.5
CSS0048482 Camellia sinensis var. sinensis HOM05D007839 ORTHO05D009924 2.2e-20 103.6 197 40.6
MBI07_g43266_MAGBIO Magnolia biondii HOM05D007839 ORTHO05D009924 4.9e-20 102.4 182 39.6
Potri.004G064800 Populus trichocarpa HOM05D007839 ORTHO05D009924 4.9e-20 102.4 149 47.0
Peaxi162Scf00008g02916 Petunia axillaris HOM05D007839 ORTHO05D009924 1.1e-19 101.3 187 42.8
QL05p058124 Quercus lobata HOM05D007839 ORTHO05D009924 1.4e-19 100.9 201 40.3
Aa31LG10G6870 Aethionema arabicum HOM05D007839 ORTHO05D009924 1.9e-19 100.5 188 37.2
Cpa.g.sc166.6 Carica papaya HOM05D007839 ORTHO05D009924 1.9e-19 100.5 155 44.5
Sabra04G0043100 Salix brachista HOM05D007839 ORTHO05D009924 1.9e-19 100.5 149 45.0
MD10G1262200 Malus domestica HOM05D007839 ORTHO05D009924 2.5e-19 100.1 171 42.1
Duzib235G0881 Durio zibethinus HOM05D007839 ORTHO05D009924 3.2e-19 99.8 181 40.3
AL4G30500 Arabidopsis lyrata HOM05D007839 ORTHO05D009924 4.2e-19 99.4 188 37.8
AT2G34530 Arabidopsis thaliana HOM05D007839 ORTHO05D009924 7.1e-19 98.6 186 37.6
BcaB02g09533 Brassica carinata HOM05D007839 ORTHO05D009924 9.3e-19 98.2 188 36.7
TWI09G0569 Tripterygium wilfordii HOM05D007839 ORTHO05D009924 9.3e-19 98.2 203 35.0
TPR.G11372 Trifolium pratense HOM05D007839 ORTHO05D009924 1.2e-18 97.8 132 50.0
BcaC02g11515 Brassica carinata HOM05D007839 ORTHO05D009924 2.1e-18 97.1 186 37.1
COL.COLO4_31073 Corchorus olitorius HOM05D007839 ORTHO05D009924 2.7e-18 96.7 149 41.6
MD05G1283900 Malus domestica HOM05D007839 ORTHO05D009924 2.7e-18 96.7 156 44.9
C04p63860 Brassica napus HOM05D007839 ORTHO05D009924 3.5e-18 96.3 193 36.8
BraA04t18149Z Brassica rapa HOM05D007839 ORTHO05D009924 3.5e-18 96.3 193 36.8
CARHR128620 Cardamine hirsuta HOM05D007839 ORTHO05D009924 4.6e-18 95.9 188 37.2
Gohir.A06G137400 Gossypium hirsutum HOM05D007839 ORTHO05D009924 1.0e-17 94.7 178 38.8
Sp4g16790 Schrenkiella parvula HOM05D007839 ORTHO05D009924 1.0e-17 94.7 188 36.7
THA.LOC104814297 Tarenaya hassleriana HOM05D007839 ORTHO05D009924 1.8e-17 94.0 205 36.1
Gorai.010G166400 Gossypium raimondii HOM05D007839 ORTHO05D009924 2.3e-17 93.6 178 38.8
CANSAT35G0562 Cannabis sativa HOM05D007839 ORTHO05D009924 3.0e-17 93.2 192 37.0
Prupe.4G080500 Prunus persica HOM05D007839 ORTHO05D009924 3.0e-17 93.2 150 42.0
BolC4t27853H Brassica oleracea HOM05D007839 ORTHO05D009924 3.9e-17 92.8 133 44.4
Gohir.D06G142600 Gossypium hirsutum HOM05D007839 ORTHO05D009924 3.9e-17 92.8 178 38.8
RcHm_v2.0_Chr5g0014141 Rosa chinensis HOM05D007839 ORTHO05D009924 5.1e-17 92.4 167 40.7
Sopen02g019500 Solanum pennellii HOM05D007839 ORTHO05D009924 8.7e-17 91.7 150 41.3
BcaB06g28780 Brassica carinata HOM05D007839 ORTHO05D009924 1.1e-16 91.3 146 40.4
QL05p058196 Quercus lobata HOM05D007839 ORTHO05D009924 1.1e-16 91.3 187 37.4
Thecc.06G150800 Theobroma cacao HOM05D007839 ORTHO05D009924 1.5e-16 90.9 179 39.1
BolC4t23033H Brassica oleracea HOM05D007839 ORTHO05D009924 5.7e-16 89.0 185 35.7
C04p14500 Brassica napus HOM05D007839 ORTHO05D009924 7.4e-16 88.6 133 43.6
FAN16G2540 Fragaria x ananassa HOM05D000499 ORTHO05D006980 7.4e-16 88.6 158 45.6
FAN25G1788 Fragaria x ananassa HOM05D007839 ORTHO05D009924 7.4e-16 88.6 158 44.9
Haze_05595 Corylus avellana HOM05D007839 ORTHO05D009924 1.3e-15 87.8 160 38.8
BraA05t20061Z Brassica rapa HOM05D007839 ORTHO05D009924 2.1e-15 87.0 182 36.3
A05p11150 Brassica napus HOM05D007839 ORTHO05D009924 2.8e-15 86.7 133 42.9
Nitab4.5_0009201g0030 Nicotiana tabacum HOM05D007839 ORTHO05D009924 2.8e-15 86.7 101 53.5
GSVIVG01021451001 Vitis vinifera HOM05D007839 ORTHO05D009924 3.7e-15 86.3 189 33.9
FAN11G2724 Fragaria x ananassa HOM05D000499 ORTHO05D006980 4.8e-15 85.9 156 43.6
Nitab4.5_0000869g0080 Nicotiana tabacum HOM05D007839 ORTHO05D009924 4.8e-15 85.9 110 48.2
FvH4_3g05560 Fragaria vesca HOM05D007839 ORTHO05D009924 6.3e-15 85.5 156 43.6
Sabra11G0067200 Salix brachista HOM05D007839 ORTHO05D009924 1.8e-14 84.0 136 44.9
PGSC0003DMG400021096 Solanum tuberosum HOM05D007839 ORTHO05D009924 1.8e-14 84.0 136 41.2
ClCG01G024620 Citrullus lanatus HOM05D007839 ORTHO05D009924 3.1e-14 83.2 187 33.7
MBI07_g37165_MAGBIO Magnolia biondii HOM05D007839 ORTHO05D009924 6.9e-14 82.0 126 40.5
A04p26450 Brassica napus HOM05D007839 ORTHO05D009924 2.6e-13 80.1 131 40.5
Sed0023114 Sechium edule HOM05D007839 ORTHO05D009924 2.6e-13 80.1 185 35.7
GSVIVG01021458001 Vitis vinifera HOM05D007839 ORTHO05D009924 4.5e-13 79.3 128 46.1
CiPaw.09G123700 Carya illinoinensis HOM05D007839 ORTHO05D009924 1.0e-12 78.2 129 41.1
HPP92_020033 Vanilla planifolia HOM05D007839 ORTHO05D009924 1.3e-12 77.8 189 33.9
RcHm_v2.0_Chr5g0014111 Rosa chinensis HOM05D007839 ORTHO05D009924 1.7e-12 77.4 131 45.0
Thhalv10017730m.g Eutrema salsugineum HOM05D007839 ORTHO05D009924 8.4e-12 75.1 123 41.5
CsaV3_6G051740 Cucumis sativus L. HOM05D007839 ORTHO05D009924 1.9e-11 73.9 191 34.6
MELO3C007133.2 Cucumis melo HOM05D007839 ORTHO05D009924 9.3e-11 71.6 181 33.7
ATR1091G096 Amborella trichopoda HOM05D000884 ORTHO05D002127 1.2e-10 71.2 92 43.5
QL05p058141 Quercus lobata HOM05D008587 ORTHO05D010485 1.6e-10 70.9 104 42.3
Ciclev10016244m.g Citrus clementina HOM05D008587 ORTHO05D010485 2.7e-10 70.1 88 44.3
MBI07_g35861_MAGBIO Magnolia biondii HOM05D007839 ORTHO05D009924 3.0e-09 66.6 94 41.5
arahy.Tifrunner.gnm1.ann1.9V8GBM Arachis hypogaea HOM05D007839 ORTHO05D009924 5.1e-09 65.9 190 30.0
Atru.chr10.1227 Acer truncatum HOM05D008587 ORTHO05D010485 3.3e-08 63.2 88 40.9
Manes.17G070000 Manihot esculenta HOM05D008587 ORTHO05D010485 3.3e-08 63.2 126 34.9
Sabra04G0043200 Salix brachista HOM05D008587 ORTHO05D010485 1.6e-07 60.8 137 33.6
Carub.0004s1620 Capsella rubella HOM05D007839 ORTHO05D009924 2.2e-07 60.5 102 42.2
Potri.004G064900 Populus trichocarpa HOM05D008587 ORTHO05D010485 2.2e-07 60.5 82 43.9
QL05p058149 Quercus lobata HOM05D008587 ORTHO05D010485 3.7e-07 59.7 104 38.5
BcaB02g09532 Brassica carinata HOM05D008587 ORTHO05D010485 4.8e-07 59.3 91 40.7
BcaC02g11516 Brassica carinata HOM05D008587 ORTHO05D010485 1.1e-06 58.2 135 34.1
A05p11130 Brassica napus HOM05D008587 ORTHO05D010485 1.1e-06 58.2 91 39.6
C04p14490 Brassica napus HOM05D008587 ORTHO05D010485 1.1e-06 58.2 135 34.1
BolC4t23032H Brassica oleracea HOM05D008587 ORTHO05D010485 1.1e-06 58.2 135 34.1
BraA05t20060Z Brassica rapa HOM05D008587 ORTHO05D010485 1.1e-06 58.2 91 39.6
Cfa000946 Carpinus fangiana HOM05D008587 ORTHO05D010485 1.8e-06 57.4 137 32.1
CiPaw.09G123400 Carya illinoinensis HOM05D008587 ORTHO05D010485 1.8e-06 57.4 110 35.5
AT2G34540 Arabidopsis thaliana HOM05D008587 ORTHO05D010485 2.4e-06 57.0 91 40.7
Sp4g16800 Schrenkiella parvula HOM05D008587 ORTHO05D010485 2.4e-06 57.0 91 40.7
Prupe.4G080600 Prunus persica HOM05D008587 ORTHO05D010485 3.1e-06 56.6 110 39.1
QL05p058191 Quercus lobata HOM05D008587 ORTHO05D010485 3.1e-06 56.6 116 39.7
THA.LOC104814298 Tarenaya hassleriana HOM05D008587 ORTHO05D010485 3.1e-06 56.6 101 37.6
Cpa.g.sc166.5 Carica papaya HOM05D008587 ORTHO05D010485 4.1e-06 56.2 104 34.6
Thhalv10017034m.g Eutrema salsugineum HOM05D008587 ORTHO05D010485 5.3e-06 55.8 135 34.1


User provided reference genes

Program Settings