Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.15G083100 Glycine max HOM05D005280 ORTHO05D006253 5.1e-78 295.4 143 100.0
Phvul.006G175800 Phaseolus vulgaris HOM05D005280 ORTHO05D006253 6.3e-76 288.5 143 96.5
Glyma.13G229400 Glycine max HOM05D005280 ORTHO05D006253 2.4e-75 286.6 143 95.8
VMungo0540G1202 Vigna mungo HOM05D005280 ORTHO05D006253 6.9e-75 285.0 143 95.8
Ca_00439_v3 Cicer arietinum L. HOM05D005280 ORTHO05D006253 2.2e-73 280.0 143 91.6
Psat1g197880 Pisum sativum HOM05D005280 ORTHO05D006253 6.5e-73 278.5 143 90.9
Medtr2g016160 Medicago truncatula HOM05D005280 ORTHO05D006253 7.2e-72 275.0 143 89.5
Lalb_Chr20g0117481 Lupinus albus HOM05D005280 ORTHO05D006253 4.7e-71 272.3 144 88.9
Lj6g0027668 Lotus japonicus HOM05D005280 ORTHO05D006253 1.4e-70 270.8 142 88.0
CANSAT80G2107 Cannabis sativa HOM05D005280 ORTHO05D006253 4.4e-69 265.8 143 85.3
arahy.Tifrunner.gnm1.ann1.8U8ZZM Arachis hypogaea HOM05D005280 ORTHO05D006253 7.4e-69 265.0 143 86.0
arahy.Tifrunner.gnm1.ann1.IM81E3 Arachis hypogaea HOM05D005280 ORTHO05D006253 7.4e-69 265.0 143 86.0
Hma1.2p1_1912F.1_g307320 Hydrangea macrophylla HOM05D005280 ORTHO05D006253 6.3e-68 261.9 143 85.3
ClCG01G023770 Citrullus lanatus HOM05D005280 ORTHO05D006253 1.1e-67 261.2 143 86.7
CsaV3_6G050930 Cucumis sativus L. HOM05D005280 ORTHO05D006253 1.1e-67 261.2 143 86.7
Cfa000612 Carpinus fangiana HOM05D005280 ORTHO05D006253 1.8e-67 260.4 143 82.5
MELO3C007211.2 Cucumis melo HOM05D005280 ORTHO05D006253 1.8e-67 260.4 143 86.7
Sed0011601 Sechium edule HOM05D005280 ORTHO05D006253 1.8e-67 260.4 143 86.0
Dinv40681 Davidia involucrata HOM05D005280 ORTHO05D006253 2.4e-67 260.0 143 85.3
Dinv16775 Davidia involucrata HOM05D005280 ORTHO05D006253 7.0e-67 258.5 143 84.6
vmacro16064 Vaccinium macrocarpon HOM05D005280 ORTHO05D006253 9.1e-67 258.1 143 84.6
CiPaw.10G059400 Carya illinoinensis HOM05D005280 ORTHO05D006253 1.2e-66 257.7 143 82.5
Haze_06226 Corylus avellana HOM05D005280 ORTHO05D006253 1.6e-66 257.3 143 81.8
Lsat_1_v5_gn_7_24160 Lactuca sativa HOM05D005280 ORTHO05D006253 2.0e-66 256.9 143 83.2
ECA236G4327 Erigeron canadensis HOM05D005280 ORTHO05D006253 3.5e-66 256.1 143 83.9
Manes.16G040400 Manihot esculenta HOM05D005280 ORTHO05D006253 4.5e-66 255.8 143 79.7
Manes.17G056200 Manihot esculenta HOM05D005280 ORTHO05D006253 5.9e-66 255.4 143 79.0
QL05p047377 Quercus lobata HOM05D005280 ORTHO05D006253 7.7e-66 255.0 143 80.4
Rhsim02G0143200 Rhododendron simsii HOM05D005280 ORTHO05D006253 7.7e-66 255.0 143 83.2
Potri.004G057600 Populus trichocarpa HOM05D005280 ORTHO05D006253 1.0e-65 254.6 143 81.8
HanXRQChr05g0139841 Helianthus annuus HOM05D005280 ORTHO05D006253 1.3e-65 254.2 143 83.2
DCAR_007943 Daucus carota HOM05D005280 ORTHO05D006253 3.8e-65 252.7 143 81.8
Actinidia39510 Actinidia chinensis HOM05D005280 ORTHO05D006253 5.0e-65 252.3 143 81.1
Ciclev10015974m.g Citrus clementina HOM05D005280 ORTHO05D006253 8.5e-65 251.5 144 82.6
Prupe.4G062000 Prunus persica HOM05D005280 ORTHO05D006253 1.5e-64 250.8 149 79.2
CSS0022801 Camellia sinensis var. sinensis HOM05D005280 ORTHO05D006253 3.2e-64 249.6 143 79.0
Cc02_g15040 Coffea canephora HOM05D005280 ORTHO05D006253 3.2e-64 249.6 146 80.8
RcHm_v2.0_Chr5g0010881 Rosa chinensis HOM05D005280 ORTHO05D006253 3.2e-64 249.6 145 80.7
TWI38G0304 Tripterygium wilfordii HOM05D005280 ORTHO05D006253 3.2e-64 249.6 144 79.2
FvH4_3g07730 Fragaria vesca HOM05D005280 ORTHO05D006253 4.2e-64 249.2 144 79.2
FAN11G1284 Fragaria x ananassa HOM05D005280 ORTHO05D006253 5.5e-64 248.8 144 79.2
FAN16G3700 Fragaria x ananassa HOM05D005280 ORTHO05D006253 5.5e-64 248.8 144 79.2
Atru.chr10.1658 Acer truncatum HOM05D005280 ORTHO05D006253 7.2e-64 248.4 144 79.2
FAN21G3704 Fragaria x ananassa HOM05D005280 ORTHO05D006253 7.2e-64 248.4 144 78.5
FAN25G0161 Fragaria x ananassa HOM05D005280 ORTHO05D006253 7.2e-64 248.4 144 79.2
PGR042G3394 Punica granatum HOM05D005280 ORTHO05D006253 7.2e-64 248.4 143 77.6
Sabra04G0037300 Salix brachista HOM05D005280 ORTHO05D006253 7.2e-64 248.4 143 79.0
Lj1A206T60 Lonicera japonica HOM05D005280 ORTHO05D006253 9.4e-64 248.1 143 78.3
MD10G1279400 Malus domestica HOM05D005280 ORTHO05D006253 2.1e-63 246.9 149 77.9
AUR62017603 Chenopodium quinoa HOM05D005280 ORTHO05D006253 2.7e-63 246.5 144 79.2
Sc05g0007070 Simmondsia chinensis HOM05D005280 ORTHO05D006253 2.7e-63 246.5 143 75.5
COL.COLO4_31288 Corchorus olitorius HOM05D005280 ORTHO05D006253 4.7e-63 245.7 144 78.5
AUR62015144 Chenopodium quinoa HOM05D005280 ORTHO05D006253 6.1e-63 245.4 144 79.2
PGSC0003DMG400009000 Solanum tuberosum HOM05D005280 ORTHO05D006253 6.1e-63 245.4 142 81.0
THA.LOC104812639 Tarenaya hassleriana HOM05D005280 ORTHO05D006253 6.1e-63 245.4 143 79.0
Ah.01g013480 Amaranthus hybridus HOM05D005280 ORTHO05D006253 8.0e-63 245.0 144 77.8
Duzib192G0183 Durio zibethinus HOM05D005280 ORTHO05D006253 8.0e-63 245.0 144 79.2
MD05G1300300 Malus domestica HOM05D005280 ORTHO05D006253 8.0e-63 245.0 151 76.2
PGSC0003DMG400008719 Solanum tuberosum HOM05D005280 ORTHO05D006253 1.0e-62 244.6 142 80.3
Solyc03g062940.3 Solanum lycopersicum HOM05D005280 ORTHO05D006253 3.0e-62 243.0 142 79.6
Sopen03g015240 Solanum pennellii HOM05D005280 ORTHO05D006253 3.0e-62 243.0 142 79.6
Gohir.A10G036800 Gossypium hirsutum HOM05D005280 ORTHO05D006253 4.0e-62 242.7 144 78.5
Peaxi162Scf00871g00047 Petunia axillaris HOM05D005280 ORTHO05D006253 4.0e-62 242.7 142 80.3
Thecc.06G170100 Theobroma cacao HOM05D005280 ORTHO05D006253 5.2e-62 242.3 144 78.5
EL10Ac9g22853 Beta vulgaris HOM05D005280 ORTHO05D006253 8.8e-62 241.5 143 76.2
Nitab4.5_0000294g0080 Nicotiana tabacum HOM05D005280 ORTHO05D006253 8.8e-62 241.5 142 78.2
Nitab4.5_0001235g0070 Nicotiana tabacum HOM05D005280 ORTHO05D006253 1.1e-61 241.1 142 78.2
Gohir.D10G037400 Gossypium hirsutum HOM05D005280 ORTHO05D006253 1.5e-61 240.7 144 77.8
Duzib160G0285 Durio zibethinus HOM05D005280 ORTHO05D006253 2.0e-61 240.4 144 77.1
Nn1g04427 Nelumbo nucifera HOM05D005280 ORTHO05D006253 2.6e-61 240.0 143 76.9
Gorai.011G039400 Gossypium raimondii HOM05D005280 ORTHO05D006253 3.3e-61 239.6 144 77.1
MBI05_g10770_MAGBIO Magnolia biondii HOM05D005280 ORTHO05D006253 3.3e-61 239.6 143 76.9
THA.LOC104804949 Tarenaya hassleriana HOM05D005280 ORTHO05D006253 4.4e-61 239.2 143 76.9
Aqoxy170s003 Aquilegia oxysepala HOM05D005280 ORTHO05D006253 5.7e-61 238.8 143 76.2
Aqoxy7G03216 Aquilegia oxysepala HOM05D005280 ORTHO05D006253 5.7e-61 238.8 143 76.2
Aa31LG6G6330 Aethionema arabicum HOM05D005280 ORTHO05D006253 7.5e-61 238.4 144 76.4
CAN.G206.30 Capsicum annuum HOM05D005280 ORTHO05D006253 7.5e-61 238.4 142 78.9
BcaC01g00082 Brassica carinata HOM05D005280 ORTHO05D006253 9.7e-61 238.0 143 76.2
C03p75590 Brassica napus HOM05D005280 ORTHO05D006253 9.7e-61 238.0 143 76.2
BolC3t19816H Brassica oleracea HOM05D005280 ORTHO05D006253 9.7e-61 238.0 143 76.2
Sp1g25120 Schrenkiella parvula HOM05D005280 ORTHO05D006253 1.3e-60 237.7 144 76.4
HPP92_008751 Vanilla planifolia HOM05D005280 ORTHO05D006253 1.3e-60 237.7 143 76.2
Carub.0001s2739 Capsella rubella HOM05D005280 ORTHO05D006253 1.7e-60 237.3 144 76.4
MBI07_g43934_MAGBIO Magnolia biondii HOM05D005280 ORTHO05D006253 1.7e-60 237.3 143 76.2
PSO229G0003 Papaver somniferum HOM05D005280 ORTHO05D006253 1.7e-60 237.3 143 73.4
TAR629G2088 Trochodendron aralioides HOM05D005280 ORTHO05D006253 1.7e-60 237.3 143 74.1
BraA08t34477Z Brassica rapa HOM05D005280 ORTHO05D006253 2.2e-60 236.9 143 75.5
CARHR028510 Cardamine hirsuta HOM05D005280 ORTHO05D006253 2.2e-60 236.9 144 75.7
Thhalv10008237m.g Eutrema salsugineum HOM05D005280 ORTHO05D006253 2.2e-60 236.9 144 76.4
AL1G42940 Arabidopsis lyrata HOM05D005280 ORTHO05D006253 2.8e-60 236.5 144 77.8
BcaB03g12145 Brassica carinata HOM05D005280 ORTHO05D006253 2.8e-60 236.5 143 75.5
BcaB07g32507 Brassica carinata HOM05D005280 ORTHO05D006253 3.7e-60 236.1 143 75.5
SHI28515 Sapria himalayana HOM05D005280 ORTHO05D006253 3.7e-60 236.1 143 75.5
AT1G29260 Arabidopsis thaliana HOM05D005280 ORTHO05D006253 4.8e-60 235.7 144 77.1
PSO675G8759 Papaver somniferum HOM05D005280 ORTHO05D006253 8.2e-60 235.0 143 72.7
BcaC05g26943 Brassica carinata HOM05D005280 ORTHO05D006253 1.4e-59 234.2 144 75.7
A09p37140 Brassica napus HOM05D005280 ORTHO05D006253 1.4e-59 234.2 144 75.7
C05p27910 Brassica napus HOM05D005280 ORTHO05D006253 1.4e-59 234.2 144 75.7
BolC5t31517H Brassica oleracea HOM05D005280 ORTHO05D006253 1.4e-59 234.2 144 75.7
BraA09t39230Z Brassica rapa HOM05D005280 ORTHO05D006253 1.4e-59 234.2 144 75.7
unitig_699.g19366 Utricularia gibba HOM05D005280 ORTHO05D006253 5.3e-59 232.3 143 74.8
MSTRG.7412 Avicennia marina HOM05D005280 ORTHO05D006253 9.1e-59 231.5 143 75.5
Migut.M01035 Erythranthe guttata HOM05D005280 ORTHO05D006253 7.7e-58 228.4 143 72.7
SGA_v2.0_scaffold1G00053 Striga asiatica HOM05D005280 ORTHO05D006253 7.7e-58 228.4 143 73.4
CDE10G0374 Ceratophyllum demersum HOM05D005280 ORTHO05D006253 2.9e-57 226.5 143 71.3
Mapoly0030s0014 Marchantia polymorpha HOM05D005280 ORTHO05D006253 3.2e-48 196.4 143 61.5
Pp3c17_8040 Physcomitrium patens HOM05D005280 ORTHO05D006253 1.8e-46 190.7 143 59.4
SMO119G0322 Selaginella moellendorffii HOM05D005280 ORTHO05D006253 5.7e-45 185.7 143 61.5
PSO782G3364 Papaver somniferum HOM05D005280 ORTHO05D006253 1.3e-44 184.5 115 69.6
Zm00001eb238680 Zea mays HOM05D005280 ORTHO05D006253 3.7e-44 183.0 144 56.9
Cre17.g730200 Chlamydomonas reinhardtii HOM05D005280 ORTHO05D006253 3.1e-43 179.9 139 57.6
A08p25250 Brassica napus HOM05D005280 ORTHO05D006253 4.1e-43 179.5 143 60.1
Cpa.g.sc7.74 Carica papaya HOM05D005280 ORTHO05D006253 4.3e-40 169.5 143 61.5
Aqoxy1G02047 Aquilegia oxysepala HOM05D005280 ORTHO05D006253 1.0e-38 164.9 106 71.7
AagrBONN_evm.TU.Sc2ySwM_117.3414 Anthoceros agrestis HOM05D005280 ORTHO05D006253 1.8e-38 164.1 143 55.2
Sabra11G0048200 Salix brachista HOM05D005280 ORTHO05D006253 3.0e-38 163.3 100 74.0
SEGI_31924 Sequoiadendron giganteum HOM05D005280 ORTHO05D006253 1.2e-34 151.4 111 64.0
CBR_g23503 Chara braunii HOM05D005280 ORTHO05D006253 2.7e-34 150.2 141 54.6
PRCOL_00004365 Prasinoderma coloniale HOM05D005280 ORTHO05D006253 4.6e-34 149.4 110 63.6
MCO15G120 Micromonas commoda HOM05D005280 ORTHO05D006253 4.0e-30 136.3 109 54.1
Pp3c15_2410 Physcomitrium patens HOM05D005280 ORTHO05D006253 5.8e-29 132.5 131 48.1
ATR0706G060 Amborella trichopoda HOM05D005280 ORTHO05D006253 1.4e-27 127.9 115 56.5
AUR62034161 Chenopodium quinoa HOM05D005280 ORTHO05D006253 1.8e-22 110.9 143 42.7
MBI16_g15539_MAGBIO Magnolia biondii HOM05D005280 ORTHO05D006253 1.5e-16 91.3 143 37.1
Dinv41375 Davidia involucrata HOM05D000140 ORTHO05D000087 6.8e-14 82.4 134 41.0
FAN14G0286 Fragaria x ananassa HOM05D005280 ORTHO05D019446 3.7e-12 76.6 124 38.7
VMungo1383G1864 Vigna mungo HOM05D005280 ORTHO05D006253 1.6e-10 71.2 35 91.4
VMungo0331G0944 Vigna mungo HOM05D005280 ORTHO05D006253 3.9e-09 66.6 35 85.7
Potri.011G066600 Populus trichocarpa HOM05D005280 ORTHO05D006253 4.3e-08 63.2 32 78.1
Cfa022092 Carpinus fangiana HOM05D000164 ORTHO05D121826 4.0e-06 56.6 76 40.8


User provided reference genes

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