Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.15G077600 Glycine max HOM05D007160 ORTHO05D005331 1.6e-120 436.4 271 100.0
Glyma.13G236100 Glycine max HOM05D007160 ORTHO05D005331 2.6e-83 312.8 281 70.1
VMungo0540G2483 Vigna mungo HOM05D007160 ORTHO05D005331 5.3e-76 288.5 284 65.5
Phvul.006G182700 Phaseolus vulgaris HOM05D007160 ORTHO05D005331 5.7e-70 268.5 286 64.0
Ca_00358_v3 Cicer arietinum L. HOM05D007160 ORTHO05D005331 1.0e-55 221.1 291 59.5
Ca_30973_v3 Cicer arietinum L. HOM05D007160 ORTHO05D005331 1.0e-55 221.1 291 59.5
Lj6g0014856 Lotus japonicus HOM05D007160 ORTHO05D005331 2.8e-53 213.0 305 58.4
Psat1g203080 Pisum sativum HOM05D007160 ORTHO05D005331 3.6e-48 196.1 300 50.3
Medtr2g014400 Medicago truncatula HOM05D007160 ORTHO05D005331 6.1e-48 195.3 255 54.5
Lalb_Chr20g0121591 Lupinus albus HOM05D007160 ORTHO05D005331 1.0e-42 177.9 267 53.2
arahy.Tifrunner.gnm1.ann1.704E4A Arachis hypogaea HOM05D007160 ORTHO05D005331 9.8e-38 161.4 299 49.8
Ca_18588_v3 Cicer arietinum L. HOM05D007160 ORTHO05D005331 5.4e-36 155.6 288 49.7
arahy.Tifrunner.gnm1.ann1.AUV6LD Arachis hypogaea HOM05D007160 ORTHO05D005331 1.2e-35 154.5 324 41.7
Medtr4g088385 Medicago truncatula HOM05D007160 ORTHO05D005331 1.2e-35 154.5 361 49.0
Glyma.07G201100 Glycine max HOM05D007160 ORTHO05D005331 1.6e-35 154.1 379 44.1
VMungo0251G1795 Vigna mungo HOM05D007160 ORTHO05D005331 4.6e-35 152.5 381 42.0
Glyma.13G175300 Glycine max HOM05D007160 ORTHO05D005331 2.3e-34 150.2 380 43.9
Lj4g0028244 Lotus japonicus HOM05D007160 ORTHO05D005331 2.3e-34 150.2 314 45.9
TPR.G19911 Trifolium pratense HOM05D007160 ORTHO05D005331 3.3e-33 146.4 355 43.7
Phvul.002G232100 Phaseolus vulgaris HOM05D007160 ORTHO05D005331 3.5e-27 126.3 359 42.6
Cfa000523 Carpinus fangiana HOM05D007160 ORTHO05D005331 6.6e-26 122.1 275 42.2
Haze_06386 Corylus avellana HOM05D007160 ORTHO05D005331 8.1e-24 115.2 299 39.8
MD05G1310400 Malus domestica HOM05D007160 ORTHO05D005331 8.9e-23 111.7 320 45.0
Lalb_Chr09g0327841 Lupinus albus HOM05D007160 ORTHO05D005331 2.6e-22 110.2 391 30.7
Duzib192G1060 Durio zibethinus HOM05D007160 ORTHO05D005331 1.1e-20 104.8 306 34.0
Potri.004G048301 Populus trichocarpa HOM05D007160 ORTHO05D005331 2.1e-19 100.5 256 43.4
CiPaw.10G052400 Carya illinoinensis HOM05D007160 ORTHO05D005331 3.0e-18 96.7 267 46.8
Potri.011G057500 Populus trichocarpa HOM05D007160 ORTHO05D005331 8.7e-18 95.1 251 37.8
CiPaw.09G063200 Carya illinoinensis HOM05D007160 ORTHO05D005331 2.5e-17 93.6 278 39.2
Oeu014779.1 Olea europaea HOM05D007160 ORTHO05D005331 5.6e-17 92.4 273 37.0
Prupe.4G052200 Prunus persica HOM05D007160 ORTHO05D005331 7.3e-17 92.0 324 32.4
Duzib160G0215 Durio zibethinus HOM05D007160 ORTHO05D005331 2.8e-16 90.1 283 36.4
Duzib235G1074 Durio zibethinus HOM05D007160 ORTHO05D005331 4.7e-16 89.4 329 38.6
Gohir.D10G028200 Gossypium hirsutum HOM05D007160 ORTHO05D005331 1.8e-15 87.4 296 38.9
Gorai.009G167000 Gossypium raimondii HOM05D007160 ORTHO05D005331 1.8e-15 87.4 292 31.5
Hma1.2p1_0558F.1_g178530 Hydrangea macrophylla HOM05D007160 ORTHO05D005331 3.1e-15 86.7 301 40.9
Sabra11G0039600 Salix brachista HOM05D007160 ORTHO05D005331 5.3e-15 85.9 268 36.9
Sed0007130 Sechium edule HOM05D007160 ORTHO05D005331 5.3e-15 85.9 275 33.8
TPR.G11687 Trifolium pratense HOM05D007160 ORTHO05D005331 5.3e-15 85.9 176 46.6
Dinv17351 Davidia involucrata HOM05D007160 ORTHO05D005331 9.0e-15 85.1 123 49.6
Gohir.D05G162000 Gossypium hirsutum HOM05D007160 ORTHO05D005331 1.5e-14 84.3 296 30.7
DCAR_008006 Daucus carota HOM05D007160 ORTHO05D005331 2.6e-14 83.6 286 42.0
QL05p042103 Quercus lobata HOM05D007160 ORTHO05D005331 2.6e-14 83.6 127 46.5
QL05p042154 Quercus lobata HOM05D007160 ORTHO05D005331 2.6e-14 83.6 127 46.5
Gohir.A10G027800 Gossypium hirsutum HOM05D007160 ORTHO05D005331 1.3e-13 81.3 321 40.2
DCAR_004048 Daucus carota HOM05D007160 ORTHO05D005331 1.7e-13 80.9 124 45.2
TAR627G1090 Trochodendron aralioides HOM05D018497 ORTHO05D005331 2.2e-13 80.5 141 37.6
ClCG01G023230 Citrullus lanatus HOM05D007160 ORTHO05D005331 2.9e-13 80.1 293 31.7
FvH4_3g08671 Fragaria vesca HOM05D007160 ORTHO05D005331 2.9e-13 80.1 90 51.1
FAN11G0877 Fragaria x ananassa HOM05D007160 ORTHO05D005331 2.9e-13 80.1 90 51.1
TWI63G1823 Tripterygium wilfordii HOM05D007160 ORTHO05D005331 3.8e-13 79.7 328 41.5
CANSAT35G1941 Cannabis sativa HOM05D007160 ORTHO05D005331 6.4e-13 79.0 308 39.0
MSTRG.15854 Avicennia marina HOM05D007160 ORTHO05D005331 8.4e-13 78.6 294 28.6
Sc17g0005960 Simmondsia chinensis HOM05D028926 ORTHO05D005331 8.4e-13 78.6 287 31.4
FAN21G2372 Fragaria x ananassa HOM05D007160 ORTHO05D005331 1.1e-12 78.2 87 54.0
FAN16G2322 Fragaria x ananassa HOM05D007160 ORTHO05D005331 1.4e-12 77.8 89 50.6
Sabra04G0030300 Salix brachista HOM05D007160 ORTHO05D005331 1.4e-12 77.8 317 34.7
SalBow8G5472 Salvia bowleyana HOM05D007160 ORTHO05D005331 3.2e-12 76.6 287 34.5
Thhalv10008366m.g Eutrema salsugineum HOM05D009159 ORTHO05D005331 5.4e-12 75.9 280 28.9
SalBow8G2878 Salvia bowleyana HOM05D007160 ORTHO05D005331 5.4e-12 75.9 287 34.5
Actinidia16571 Actinidia chinensis HOM05D007160 ORTHO05D005331 7.1e-12 75.5 91 51.6
Peaxi162Scf01018g00012 Petunia axillaris HOM05D007160 ORTHO05D005331 7.1e-12 75.5 298 32.6
C03p75110 Brassica napus HOM05D009159 ORTHO05D005331 9.3e-12 75.1 290 30.3
BolC3t19771H Brassica oleracea HOM05D009159 ORTHO05D005331 1.2e-11 74.7 293 31.7
Nitab4.5_0001955g0170 Nicotiana tabacum HOM05D007160 ORTHO05D005331 1.6e-11 74.3 273 34.1
Peaxi162Scf00031g00084 Petunia axillaris HOM05D007160 ORTHO05D005331 2.1e-11 73.9 357 33.6
Sp4g16260 Schrenkiella parvula HOM05D009159 ORTHO05D005331 2.1e-11 73.9 258 29.5
BcaC01g00047 Brassica carinata HOM05D009159 ORTHO05D005331 4.6e-11 72.8 293 31.4
MD10G1289700 Malus domestica HOM05D007160 ORTHO05D005331 4.6e-11 72.8 283 42.8
TAR624G0339 Trochodendron aralioides HOM05D007160 ORTHO05D005331 6.0e-11 72.4 224 29.5
Manes.17G049000 Manihot esculenta HOM05D007160 ORTHO05D005331 1.0e-10 71.6 280 38.2
Medtr2g090660 Medicago truncatula HOM05D008876 ORTHO05D010747 1.0e-10 71.6 287 30.0
Cpa.g.sc27.8 Carica papaya HOM05D007160 ORTHO05D005331 3.9e-10 69.7 315 37.1
Ciclev10016200m.g Citrus clementina HOM05D007160 ORTHO05D005331 5.1e-10 69.3 286 33.9
Cc02_g13790 Coffea canephora HOM05D007160 ORTHO05D005331 6.6e-10 68.9 102 47.1
AT2G33850 Arabidopsis thaliana HOM05D009159 ORTHO05D005331 1.5e-09 67.8 276 33.3
A08p25580 Brassica napus HOM05D009159 ORTHO05D005331 2.5e-09 67.0 269 31.2
BraA08t34510Z Brassica rapa HOM05D009159 ORTHO05D005331 2.5e-09 67.0 269 31.2
SalBow7G0780 Salvia bowleyana HOM05D007160 ORTHO05D005331 2.5e-09 67.0 278 29.1
AL4G29650 Arabidopsis lyrata HOM05D009159 ORTHO05D005331 3.3e-09 66.6 260 35.8
Manes.16G031700 Manihot esculenta HOM05D007160 ORTHO05D005331 4.3e-09 66.2 280 36.4
Nitab4.5_0004359g0050 Nicotiana tabacum HOM05D007160 ORTHO05D005331 4.3e-09 66.2 273 26.7
MSTRG.13207 Avicennia marina HOM05D007160 ORTHO05D005331 7.3e-09 65.5 267 30.0
BcaB07g32463 Brassica carinata HOM05D009159 ORTHO05D005331 7.3e-09 65.5 307 35.8
CARHR128000 Cardamine hirsuta HOM05D009159 ORTHO05D005331 7.3e-09 65.5 285 27.4
Gorai.011G030000 Gossypium raimondii HOM05D007160 ORTHO05D005331 7.3e-09 65.5 156 34.6
Prupe.4G052000 Prunus persica HOM05D007160 ORTHO05D005331 7.3e-09 65.5 100 45.0
SalBow7G0182 Salvia bowleyana HOM05D007160 ORTHO05D005331 7.3e-09 65.5 278 28.8
ECA236G4287 Erigeron canadensis HOM05D007160 ORTHO05D005331 9.6e-09 65.1 279 29.7
MELO3C007263.2 Cucumis melo HOM05D007160 ORTHO05D005331 2.1e-08 63.9 310 34.8
CARHR027910 Cardamine hirsuta HOM05D009159 ORTHO05D005331 3.6e-08 63.2 251 34.3
Dinv40598 Davidia involucrata HOM05D007882 ORTHO05D009870 3.6e-08 63.2 110 41.8
Aqoxy4G00632 Aquilegia oxysepala HOM05D018497 ORTHO05D021348 4.8e-08 62.8 333 28.2
BcaB03g12106 Brassica carinata HOM05D009159 ORTHO05D005331 4.8e-08 62.8 294 27.6
Nitab4.5_0000516g0070 Nicotiana tabacum HOM05D007160 ORTHO05D005331 4.8e-08 62.8 130 40.8
Thecc.06G181500 Theobroma cacao HOM05D007160 ORTHO05D005331 4.8e-08 62.8 181 33.1
COL.COLO4_35512 Corchorus olitorius HOM05D008876 ORTHO05D010747 6.2e-08 62.4 294 32.3
Eucgr.E03246 Eucalyptus grandis HOM05D049980 ORTHO05D005331 1.1e-07 61.6 146 37.7
PGR042G2677 Punica granatum HOM05D007160 ORTHO05D005331 1.1e-07 61.6 321 28.7
PGSC0003DMG400022807 Solanum tuberosum HOM05D007160 ORTHO05D005331 1.1e-07 61.6 118 41.5
Nitab4.5_0006098g0020 Nicotiana tabacum HOM05D007160 ORTHO05D005331 1.4e-07 61.2 81 46.9
Sed0008189 Sechium edule HOM05D007160 ORTHO05D005331 1.4e-07 61.2 281 38.4
Thhalv10017182m.g Eutrema salsugineum HOM05D009159 ORTHO05D005331 1.8e-07 60.8 271 26.9
Psat7g116440 Pisum sativum HOM05D007160 ORTHO05D005331 1.8e-07 60.8 84 48.8
Sc23g0001700 Simmondsia chinensis HOM05D028926 ORTHO05D005331 1.8e-07 60.8 298 28.5
Carub.0001s2688 Capsella rubella HOM05D009159 ORTHO05D005331 3.1e-07 60.1 292 37.3
CsaV3_6G050380 Cucumis sativus L. HOM05D007160 ORTHO05D005331 4.0e-07 59.7 323 32.5
Dinv01518 Davidia involucrata HOM05D008876 ORTHO05D010747 4.0e-07 59.7 63 49.2
Oeu001099.1 Olea europaea HOM05D007160 ORTHO05D005331 4.0e-07 59.7 303 32.0
AL1G42030 Arabidopsis lyrata HOM05D009159 ORTHO05D005331 5.3e-07 59.3 318 28.6
Nitab4.5_0000516g0060 Nicotiana tabacum HOM05D007160 ORTHO05D005331 6.9e-07 58.9 130 40.0
Duzib132G0209 Durio zibethinus HOM05D008876 ORTHO05D010747 1.2e-06 58.2 274 35.4
Duzib132G0342 Durio zibethinus HOM05D008876 ORTHO05D010747 1.2e-06 58.2 274 35.4
Nitab4.5_0003341g0030 Nicotiana tabacum HOM05D007160 ORTHO05D005331 1.2e-06 58.2 117 37.6
TAR629G2975 Trochodendron aralioides HOM05D018497 ORTHO05D021348 2.0e-06 57.4 114 35.1
Nitab4.5_0000516g0090 Nicotiana tabacum HOM05D007160 ORTHO05D005331 2.6e-06 57.0 118 37.3
Peaxi162Scf00926g00031 Petunia axillaris HOM05D007160 ORTHO05D005331 2.6e-06 57.0 77 48.1
Solyc02g077710.1 Solanum lycopersicum HOM05D007160 ORTHO05D005331 2.6e-06 57.0 126 38.1
SalBow8G4606 Salvia bowleyana HOM05D007160 ORTHO05D005331 4.5e-06 56.2 118 36.4
EL10Ac8g20435 Beta vulgaris HOM05D007160 ORTHO05D005331 5.8e-06 55.8 105 43.8
CSS0024231 Camellia sinensis var. sinensis HOM05D007160 ORTHO05D005331 5.8e-06 55.8 228 45.2
Nitab4.5_0001375g0120 Nicotiana tabacum HOM05D007160 ORTHO05D005331 5.8e-06 55.8 130 39.2
Nitab4.5_0001375g0140 Nicotiana tabacum HOM05D007160 ORTHO05D005331 7.6e-06 55.5 118 38.1
Nitab4.5_0001375g0150 Nicotiana tabacum HOM05D007160 ORTHO05D005331 7.6e-06 55.5 118 37.3
Sp1g24680 Schrenkiella parvula HOM05D009159 ORTHO05D005331 7.6e-06 55.5 277 31.0
Sc12g0003210 Simmondsia chinensis HOM05D025247 ORTHO05D026483 7.6e-06 55.5 270 28.1


User provided reference genes

Program Settings