Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.15G071900 Glycine max HOM05D004278 ORTHO05D005544 3.8e-104 381.7 223 100.0
Glyma.13G241500 Glycine max HOM05D004278 ORTHO05D005544 2.1e-102 375.9 223 98.7
VMungo0540G2365 Vigna mungo HOM05D004278 ORTHO05D005544 6.1e-102 374.4 223 98.2
Phvul.006G187900 Phaseolus vulgaris HOM05D004278 ORTHO05D005544 6.7e-101 370.9 223 97.3
arahy.Tifrunner.gnm1.ann1.673KA0 Arachis hypogaea HOM05D004278 ORTHO05D005544 2.8e-99 365.5 223 94.6
Lalb_Chr09g0330921 Lupinus albus HOM05D004278 ORTHO05D005544 6.3e-99 364.4 223 95.5
Lalb_Chr16g0387561 Lupinus albus HOM05D004278 ORTHO05D005544 2.0e-97 359.4 223 93.3
Medtr8g010570 Medicago truncatula HOM05D004278 ORTHO05D005544 5.9e-97 357.8 223 92.8
Cpa.g.sc62.151 Carica papaya HOM05D004278 ORTHO05D005544 2.2e-96 355.9 223 94.2
TWI31G1137 Tripterygium wilfordii HOM05D004278 ORTHO05D005544 2.9e-96 355.5 223 93.7
Manes.15G163400 Manihot esculenta HOM05D004278 ORTHO05D005544 3.8e-96 355.1 223 94.2
Psat4g207360 Pisum sativum HOM05D004278 ORTHO05D005544 8.5e-96 354.0 223 91.5
TWI75G0915 Tripterygium wilfordii HOM05D004278 ORTHO05D005544 8.5e-96 354.0 223 93.7
Lj2g0008973 Lotus japonicus HOM05D004278 ORTHO05D005544 1.1e-95 353.6 229 91.3
TPR.G9766 Trifolium pratense HOM05D004278 ORTHO05D005544 1.9e-95 352.8 223 91.5
TAR628G0274 Trochodendron aralioides HOM05D004278 ORTHO05D005544 3.2e-95 352.1 223 93.3
PSO541G5084 Papaver somniferum HOM05D004278 ORTHO05D005544 4.2e-95 351.7 223 91.0
Gohir.A13G034300 Gossypium hirsutum HOM05D004278 ORTHO05D005544 5.5e-95 351.3 223 92.8
Gohir.D02G215700 Gossypium hirsutum HOM05D004278 ORTHO05D005544 5.5e-95 351.3 224 93.3
Gorai.005G243700 Gossypium raimondii HOM05D004278 ORTHO05D005544 5.5e-95 351.3 224 93.3
Gorai.013G037100 Gossypium raimondii HOM05D004278 ORTHO05D005544 7.2e-95 350.9 223 92.8
Thecc.02G085200 Theobroma cacao HOM05D004278 ORTHO05D005544 7.2e-95 350.9 223 92.4
Gohir.A03G194500 Gossypium hirsutum HOM05D004278 ORTHO05D005544 9.4e-95 350.5 224 93.3
COL.COLO4_25931 Corchorus olitorius HOM05D004278 ORTHO05D005544 1.2e-94 350.1 223 93.3
PSO675G8903 Papaver somniferum HOM05D004278 ORTHO05D005544 1.6e-94 349.7 223 90.6
Sed0011539 Sechium edule HOM05D004278 ORTHO05D005544 1.6e-94 349.7 223 93.3
Duzib132G1254 Durio zibethinus HOM05D004278 ORTHO05D005544 2.1e-94 349.4 223 93.3
Gohir.D13G032700 Gossypium hirsutum HOM05D004278 ORTHO05D005544 2.1e-94 349.4 223 92.4
CiPaw.05G064500 Carya illinoinensis HOM05D004278 ORTHO05D005544 3.6e-94 348.6 223 91.9
PGR042G2304 Punica granatum HOM05D004278 ORTHO05D005544 6.1e-94 347.8 222 92.3
Prupe.8G096900 Prunus persica HOM05D004278 ORTHO05D005544 8.0e-94 347.4 223 92.8
Ca_17260_v3 Cicer arietinum L. HOM05D004278 ORTHO05D005544 1.0e-93 347.1 228 89.5
ClCG02G005010 Citrullus lanatus HOM05D004278 ORTHO05D005544 1.0e-93 347.1 236 89.4
CsaV3_7G023570 Cucumis sativus L. HOM05D004278 ORTHO05D005544 2.3e-93 345.9 223 92.8
MELO3C012522.2 Cucumis melo HOM05D004278 ORTHO05D005544 4.0e-93 345.1 223 92.8
Manes.17G101100 Manihot esculenta HOM05D004278 ORTHO05D005544 4.0e-93 345.1 223 92.4
MD05G1066300 Malus domestica HOM05D004278 ORTHO05D005544 8.8e-93 344.0 223 91.5
MD10G1076300 Malus domestica HOM05D004278 ORTHO05D005544 8.8e-93 344.0 223 91.5
Eucgr.I00724 Eucalyptus grandis HOM05D004278 ORTHO05D005544 1.1e-92 343.6 222 91.9
Potri.009G116000 Populus trichocarpa HOM05D004278 ORTHO05D005544 1.1e-92 343.6 223 91.9
FvH4_5g29280 Fragaria vesca HOM05D004278 ORTHO05D005544 2.0e-92 342.8 225 91.6
RcHm_v2.0_Chr7g0222141 Rosa chinensis HOM05D004278 ORTHO05D005544 3.3e-92 342.0 225 91.1
QL11p043693 Quercus lobata HOM05D004278 ORTHO05D005544 7.5e-92 340.9 221 90.0
Aqoxy2G01125 Aquilegia oxysepala HOM05D004278 ORTHO05D005544 1.3e-91 340.1 222 90.5
FAN18G1232 Fragaria x ananassa HOM05D004278 ORTHO05D005544 1.3e-91 340.1 225 91.1
Nn5g29610 Nelumbo nucifera HOM05D004278 ORTHO05D005544 1.3e-91 340.1 223 90.1
FAN08G1460 Fragaria x ananassa HOM05D004278 ORTHO05D005544 1.7e-91 339.7 225 91.1
CSS0030568 Camellia sinensis var. sinensis HOM05D004278 ORTHO05D005544 2.2e-91 339.3 229 87.8
Atru.chr5.3016 Acer truncatum HOM05D004278 ORTHO05D005544 2.8e-91 339.0 226 89.4
Ciclev10029226m.g Citrus clementina HOM05D004278 ORTHO05D005544 3.7e-91 338.6 227 88.5
Actinidia27895 Actinidia chinensis HOM05D004278 ORTHO05D005544 4.1e-90 335.1 227 87.7
Hund00270 Selenicereus undatus HOM05D004278 ORTHO05D005544 1.2e-89 333.6 225 88.4
THA.LOC104804724 Tarenaya hassleriana HOM05D004278 ORTHO05D005544 1.2e-89 333.6 223 89.2
CANSAT01G0337 Cannabis sativa HOM05D004278 ORTHO05D005544 2.7e-89 332.4 223 89.2
Haze_02384 Corylus avellana HOM05D004278 ORTHO05D005544 2.7e-89 332.4 223 90.1
Dinv42064 Davidia involucrata HOM05D004278 ORTHO05D005544 2.7e-89 332.4 229 87.3
Sp1g14840 Schrenkiella parvula HOM05D004278 ORTHO05D005544 2.7e-89 332.4 223 88.3
Dinv23521 Davidia involucrata HOM05D004278 ORTHO05D005544 7.7e-89 330.9 229 86.9
GSVIVG01031966001 Vitis vinifera HOM05D004278 ORTHO05D005544 7.7e-89 330.9 222 87.8
Oeu055570.1 Olea europaea HOM05D004278 ORTHO05D005544 1.0e-88 330.5 229 87.8
SalBow6G3946 Salvia bowleyana HOM05D004278 ORTHO05D005544 1.3e-88 330.1 229 86.9
SalBow6G5126 Salvia bowleyana HOM05D004278 ORTHO05D005544 1.3e-88 330.1 229 86.9
CDE10G0378 Ceratophyllum demersum HOM05D004278 ORTHO05D005544 1.7e-88 329.7 223 88.3
HanXRQChr05g0152721 Helianthus annuus HOM05D004278 ORTHO05D005544 1.7e-88 329.7 229 88.6
Nitab4.5_0005152g0090 Nicotiana tabacum HOM05D004278 ORTHO05D005544 1.7e-88 329.7 230 86.5
THA.LOC104815454 Tarenaya hassleriana HOM05D004278 ORTHO05D005544 1.7e-88 329.7 220 89.1
AL1G28860 Arabidopsis lyrata HOM05D004278 ORTHO05D005544 2.2e-88 329.3 223 87.4
AT1G16700 Arabidopsis thaliana HOM05D004278 ORTHO05D005544 2.2e-88 329.3 223 87.4
HanXRQChr16g0505671 Helianthus annuus HOM05D004278 ORTHO05D005544 2.2e-88 329.3 228 88.2
Thhalv10008714m.g Eutrema salsugineum HOM05D004278 ORTHO05D005544 5.0e-88 328.2 223 87.4
Sopen10g023040 Solanum pennellii HOM05D004278 ORTHO05D005544 5.0e-88 328.2 230 85.7
PGSC0003DMG400033912 Solanum tuberosum HOM05D004278 ORTHO05D005544 5.0e-88 328.2 230 85.7
Peaxi162Scf00016g00727 Petunia axillaris HOM05D004278 ORTHO05D005544 6.5e-88 327.8 230 86.1
Lsat_1_v5_gn_7_89240 Lactuca sativa HOM05D004278 ORTHO05D005544 8.5e-88 327.4 227 87.2
Nitab4.5_0004172g0100 Nicotiana tabacum HOM05D004278 ORTHO05D005544 1.1e-87 327.0 230 87.4
DCAR_022973 Daucus carota HOM05D004278 ORTHO05D005544 1.5e-87 326.6 228 85.5
A07p27370 Brassica napus HOM05D004278 ORTHO05D005544 1.9e-87 326.2 223 86.1
BraA07t30378Z Brassica rapa HOM05D004278 ORTHO05D005544 1.9e-87 326.2 223 86.1
MSTRG.5398 Avicennia marina HOM05D004278 ORTHO05D005544 2.5e-87 325.9 229 85.2
EL10Ac9g21724 Beta vulgaris HOM05D004278 ORTHO05D005544 2.5e-87 325.9 225 86.7
Hma1.2p1_0066F.1_g036410 Hydrangea macrophylla HOM05D004278 ORTHO05D005544 2.5e-87 325.9 232 87.1
Ah.01g019390 Amaranthus hybridus HOM05D004278 ORTHO05D005544 3.2e-87 325.5 225 86.7
Solyc01g109620.3 Solanum lycopersicum HOM05D004278 ORTHO05D005544 3.2e-87 325.5 230 86.5
Solyc10g051350.2 Solanum lycopersicum HOM05D004278 ORTHO05D005544 3.2e-87 325.5 230 85.2
Sopen01g051810 Solanum pennellii HOM05D004278 ORTHO05D005544 3.2e-87 325.5 230 86.5
PGSC0003DMG400000726 Solanum tuberosum HOM05D004278 ORTHO05D005544 3.2e-87 325.5 230 86.5
BcaC08g45392 Brassica carinata HOM05D004278 ORTHO05D005544 4.2e-87 325.1 223 86.1
Carub.0001s1643 Capsella rubella HOM05D004278 ORTHO05D005544 4.2e-87 325.1 223 86.5
Cc02_g25830 Coffea canephora HOM05D004278 ORTHO05D005544 4.2e-87 325.1 229 85.6
Rhsim11G0177100 Rhododendron simsii HOM05D004278 ORTHO05D005544 4.2e-87 325.1 223 87.9
Sp5g34060 Schrenkiella parvula HOM05D004278 ORTHO05D005544 4.2e-87 325.1 223 86.1
CAN.G1.42 Capsicum annuum HOM05D004278 ORTHO05D005544 7.2e-87 324.3 233 85.8
AUR62011323 Chenopodium quinoa HOM05D004278 ORTHO05D005544 9.4e-87 323.9 224 87.1
AUR62016737 Chenopodium quinoa HOM05D004278 ORTHO05D005544 9.4e-87 323.9 224 87.1
Migut.N01239 Erythranthe guttata HOM05D004278 ORTHO05D005544 9.4e-87 323.9 229 85.2
Thhalv10019110m.g Eutrema salsugineum HOM05D004278 ORTHO05D005544 9.4e-87 323.9 223 86.1
C06p30230 Brassica napus HOM05D004278 ORTHO05D005544 1.2e-86 323.6 223 85.7
BolC6t38186H Brassica oleracea HOM05D004278 ORTHO05D005544 1.2e-86 323.6 223 85.7
CARHR017160 Cardamine hirsuta HOM05D004278 ORTHO05D005544 1.2e-86 323.6 223 86.5
BcaC08g47465 Brassica carinata HOM05D004278 ORTHO05D005544 1.6e-86 323.2 223 86.1
C05p14970 Brassica napus HOM05D004278 ORTHO05D005544 1.6e-86 323.2 223 87.0
C06p52880 Brassica napus HOM05D004278 ORTHO05D005544 1.6e-86 323.2 223 86.1
BolC6t40306H Brassica oleracea HOM05D004278 ORTHO05D005544 1.6e-86 323.2 223 86.1
A07p44150 Brassica napus HOM05D004278 ORTHO05D005544 2.7e-86 322.4 223 85.7
BraA07t31923Z Brassica rapa HOM05D004278 ORTHO05D005544 2.7e-86 322.4 223 85.7
Lsat_1_v5_gn_9_108541 Lactuca sativa HOM05D004278 ORTHO05D005544 6.1e-86 321.2 229 86.5
AL2G39470 Arabidopsis lyrata HOM05D004278 ORTHO05D005544 8.0e-86 320.9 223 85.7
AT1G79010 Arabidopsis thaliana HOM05D004278 ORTHO05D005544 8.0e-86 320.9 223 85.7
Ah.01g006270 Amaranthus hybridus HOM05D004278 ORTHO05D005544 1.0e-85 320.5 225 85.8
BcaB02g07191 Brassica carinata HOM05D004278 ORTHO05D005544 1.4e-85 320.1 224 84.8
A06p12670 Brassica napus HOM05D004278 ORTHO05D005544 1.8e-85 319.7 223 85.2
Carub.0002s2588 Capsella rubella HOM05D004278 ORTHO05D005544 2.3e-85 319.3 223 84.8
ECA240G2473 Erigeron canadensis HOM05D004278 ORTHO05D005544 4.0e-85 318.5 226 85.4
unitig_22.g5173 Utricularia gibba HOM05D004278 ORTHO05D005544 5.7e-84 314.7 228 81.6
HPP92_001858 Vanilla planifolia HOM05D004278 ORTHO05D005544 2.8e-83 312.4 227 84.6
Duzib052G0763 Durio zibethinus HOM05D004278 ORTHO05D005544 6.3e-83 311.2 229 84.3
vmacro02107 Vaccinium macrocarpon HOM05D004278 ORTHO05D005544 6.3e-83 311.2 269 74.3
Aa31LG4G1970 Aethionema arabicum HOM05D003886 ORTHO05D004587 1.4e-82 310.1 204 88.2
CAN.G1412.6 Capsicum annuum HOM05D004278 ORTHO05D005544 2.4e-82 309.3 186 96.2
Aa31LG7G1160 Aethionema arabicum HOM05D002153 ORTHO05D002137 7.0e-82 307.8 205 88.3
SGA_v2.0_scaffold58G20535 Striga asiatica HOM05D004278 ORTHO05D005544 2.0e-81 306.2 186 95.7
arahy.Tifrunner.gnm1.ann1.Z91YIY Arachis hypogaea HOM05D004278 ORTHO05D005544 4.5e-81 305.1 191 94.2
BraA06t24427Z Brassica rapa HOM05D002153 ORTHO05D002137 5.9e-81 304.7 203 89.2
Os03g0774200 Oryza sativa ssp. japonica HOM05D004278 ORTHO05D005544 5.9e-81 304.7 224 83.0
CARHR072680 Cardamine hirsuta HOM05D004278 ORTHO05D005544 7.7e-81 304.3 206 88.3
Nitab4.5_0001361g0250 Nicotiana tabacum HOM05D004278 ORTHO05D005544 1.0e-80 303.9 207 88.4
Zm00001eb059090 Zea mays HOM05D004278 ORTHO05D005544 2.9e-80 302.4 225 83.6
MBI16_g28725_MAGBIO Magnolia biondii HOM05D004278 ORTHO05D005544 8.5e-80 300.8 209 87.6
Nitab4.5_0000308g0130 Nicotiana tabacum HOM05D004278 ORTHO05D005544 1.9e-79 299.7 203 88.7
Hund06234 Selenicereus undatus HOM05D004278 ORTHO05D005544 2.5e-79 299.3 279 61.3
ATR0733G183 Amborella trichopoda HOM05D004278 ORTHO05D005544 2.1e-78 296.2 179 96.6
BcaC05g25531 Brassica carinata HOM05D002153 ORTHO05D002137 2.4e-74 282.7 201 85.6
Lj5A197T63 Lonicera japonica HOM05D004278 ORTHO05D005544 3.1e-74 282.3 168 98.2
SEGI_37571 Sequoiadendron giganteum HOM05D004278 ORTHO05D005544 2.7e-73 279.3 185 88.1
BolC5t30212H Brassica oleracea HOM05D004278 ORTHO05D005544 1.3e-72 276.9 223 75.8
Gorai.008G028900 Gossypium raimondii HOM05D004278 ORTHO05D005544 3.6e-70 268.9 220 70.0
Pp3c9_8460 Physcomitrium patens HOM05D004278 ORTHO05D005544 1.0e-69 267.3 187 85.0
Sc18g0004460 Simmondsia chinensis HOM05D004278 ORTHO05D005544 1.8e-69 266.5 193 86.0
SGA_v2.0_scaffold32G13166 Striga asiatica HOM05D004278 ORTHO05D005544 1.8e-69 266.5 197 83.2
Pp3c15_4330 Physcomitrium patens HOM05D004278 ORTHO05D005544 2.3e-69 266.2 186 84.9
CBR_g34677 Chara braunii HOM05D004278 ORTHO05D005544 8.3e-67 257.7 169 89.3
Mapoly0008s0062 Marchantia polymorpha HOM05D004278 ORTHO05D005544 5.4e-66 255.0 166 88.6
SMO228G0074 Selaginella moellendorffii HOM05D004278 ORTHO05D005544 5.4e-66 255.0 164 90.9
Gohir.A12G028800 Gossypium hirsutum HOM05D004278 ORTHO05D005544 2.3e-64 249.6 181 82.3
Actinidia17816 Actinidia chinensis HOM05D004278 ORTHO05D005544 2.1e-62 243.0 148 98.0
Glyma.05G236100 Glycine max HOM05D004278 ORTHO05D005544 2.8e-62 242.7 148 93.9
MCO04G399 Micromonas commoda HOM05D004278 ORTHO05D005544 3.1e-61 239.2 206 72.8
Gohir.D12G028300 Gossypium hirsutum HOM05D004278 ORTHO05D005544 1.4e-58 230.3 238 61.3
CSS0043835 Camellia sinensis var. sinensis HOM05D004278 ORTHO05D005544 3.5e-57 225.7 178 71.3
Cre12.g496750 Chlamydomonas reinhardtii HOM05D004278 ORTHO05D005544 4.6e-57 225.3 178 78.7
PRCOL_00001402 Prasinoderma coloniale HOM05D004278 ORTHO05D005544 6.0e-57 224.9 166 79.5
CDE10G0028 Ceratophyllum demersum HOM05D004278 ORTHO05D005544 1.0e-56 224.2 137 97.8
Ca_17266_v3 Cicer arietinum L. HOM05D004278 ORTHO05D005544 1.0e-56 224.2 137 83.2
Zm00001eb213750 Zea mays HOM05D004278 ORTHO05D005544 7.3e-55 218.0 155 74.8
Haze_27004 Corylus avellana HOM05D004278 ORTHO05D005544 1.4e-53 213.8 185 70.8
AagrBONN_evm.TU.Sc2ySwM_117.1035 Anthoceros agrestis HOM05D004278 ORTHO05D005544 2.2e-51 206.5 152 83.6
Potri.004G154900 Populus trichocarpa HOM05D004278 ORTHO05D005544 3.7e-51 205.7 134 94.8
TAR376G0025 Trochodendron aralioides HOM05D002092 ORTHO05D005410 1.9e-50 203.4 114 86.0
Cfa025738 Carpinus fangiana HOM05D004278 ORTHO05D005544 1.2e-49 200.7 162 75.9
Lj2g0023328 Lotus japonicus HOM05D004278 ORTHO05D005544 2.7e-49 199.5 161 70.2
HPP92_001874 Vanilla planifolia HOM05D004278 ORTHO05D431721 2.2e-35 153.3 123 68.3
TAR625G0183 Trochodendron aralioides HOM05D004278 ORTHO05D416112 3.5e-33 146.0 127 62.2
Sc08g0000500 Simmondsia chinensis HOM05D004278 ORTHO05D021139 4.5e-28 129.0 225 42.2
Thhalv10017872m.g Eutrema salsugineum HOM05D004278 ORTHO05D005544 2.9e-27 126.3 203 43.3
Lsat_1_v5_gn_5_118541 Lactuca sativa HOM05D004278 ORTHO05D021139 8.4e-19 98.2 109 50.5
TAR376G0081 Trochodendron aralioides HOM05D004278 ORTHO05D021139 1.4e-18 97.4 47 100.0
HanXRQChr15g0486481 Helianthus annuus HOM05D004278 ORTHO05D021139 3.5e-17 92.8 78 65.4
Ca_28908_v3 Cicer arietinum L. HOM05D004278 ORTHO05D004593 1.8e-08 63.9 109 45.0
Lsat_1_v5_gn_3_134741 Lactuca sativa HOM05D004278 ORTHO05D021139 1.5e-07 60.8 60 53.3


User provided reference genes

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