Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.15G063700 Glycine max HOM05D003613 ORTHO05D004055 9.7e-53 209.9 109 100.0
VMungo0540G1949 Vigna mungo HOM05D003613 ORTHO05D004055 2.9e-49 198.4 107 96.3
Glyma.13G250700 Glycine max HOM05D003613 ORTHO05D004055 8.2e-44 180.3 95 98.9
Phvul.006G195900 Phaseolus vulgaris HOM05D003613 ORTHO05D004055 5.9e-42 174.1 95 95.8
Glyma.01G154800 Glycine max HOM05D003613 ORTHO05D004055 1.0e-41 173.3 95 92.6
Glyma.15G176700 Glycine max HOM05D003613 ORTHO05D004055 1.1e-40 169.9 95 92.6
Ca_00210_v3 Cicer arietinum L. HOM05D003613 ORTHO05D004055 6.7e-38 160.6 96 86.5
Lj6g0025627 Lotus japonicus HOM05D003613 ORTHO05D004055 1.7e-36 156.0 95 81.1
TPR.G32634 Trifolium pratense HOM05D003613 ORTHO05D004055 2.0e-34 149.1 94 81.9
Medtr2g010880 Medicago truncatula HOM05D003613 ORTHO05D004055 5.9e-34 147.5 96 81.2
Cfa004173 Carpinus fangiana HOM05D003613 ORTHO05D004055 8.5e-33 143.7 95 76.8
Psat1g210880 Pisum sativum HOM05D003613 ORTHO05D004055 1.1e-32 143.3 97 80.4
Potri.003G186400 Populus trichocarpa HOM05D003613 ORTHO05D004055 5.5e-32 141.0 95 72.6
Prupe.3G105500 Prunus persica HOM05D003613 ORTHO05D004055 9.4e-32 140.2 95 77.9
Lalb_Chr20g0122601 Lupinus albus HOM05D003613 ORTHO05D004055 2.1e-31 139.0 95 74.7
CsaV3_7G031790 Cucumis sativus L. HOM05D003613 ORTHO05D004055 2.7e-31 138.7 95 74.7
Haze_15237 Corylus avellana HOM05D003613 ORTHO05D004055 4.7e-31 137.9 95 74.7
Haze_16413 Corylus avellana HOM05D003613 ORTHO05D004055 6.1e-31 137.5 95 74.7
Haze_16416 Corylus avellana HOM05D003613 ORTHO05D004055 6.1e-31 137.5 95 74.7
CiPaw.01G052100 Carya illinoinensis HOM05D003613 ORTHO05D004055 8.0e-31 137.1 95 74.7
Manes.11G070600 Manihot esculenta HOM05D003613 ORTHO05D004055 8.0e-31 137.1 95 72.6
MELO3C029246.2 Cucumis melo HOM05D003613 ORTHO05D004055 1.0e-30 136.7 95 73.7
Atru.chr1.2819 Acer truncatum HOM05D003613 ORTHO05D004055 1.4e-30 136.3 96 71.9
MD09G1229400 Malus domestica HOM05D003613 ORTHO05D004055 1.8e-30 136.0 104 71.2
Ciclev10026842m.g Citrus clementina HOM05D003613 ORTHO05D004055 2.3e-30 135.6 95 71.6
TWI31G1088 Tripterygium wilfordii HOM05D003613 ORTHO05D004055 3.0e-30 135.2 92 70.7
TWI75G1756 Tripterygium wilfordii HOM05D003613 ORTHO05D004055 6.8e-30 134.0 95 68.4
RcHm_v2.0_Chr2g0131951 Rosa chinensis HOM05D003613 ORTHO05D004055 8.8e-30 133.7 95 69.5
Sabra03G0136400 Salix brachista HOM05D003613 ORTHO05D004055 8.8e-30 133.7 86 73.3
Potri.001G038750 Populus trichocarpa HOM05D003613 ORTHO05D004055 1.5e-29 132.9 95 68.4
ClCG09G003430 Citrullus lanatus HOM05D003613 ORTHO05D004055 3.4e-29 131.7 95 71.6
ClCG10G012830 Citrullus lanatus HOM05D003613 ORTHO05D004055 3.4e-29 131.7 96 70.8
Potri.001G038200 Populus trichocarpa HOM05D003613 ORTHO05D004055 4.4e-29 131.3 95 67.4
Potri.001G040300 Populus trichocarpa HOM05D003613 ORTHO05D004055 4.4e-29 131.3 95 68.4
Sed0021976 Sechium edule HOM05D003613 ORTHO05D004055 7.5e-29 130.6 95 68.4
CsaV3_3G032670 Cucumis sativus L. HOM05D003613 ORTHO05D004055 9.8e-29 130.2 96 69.8
MD17G1228300 Malus domestica HOM05D003613 ORTHO05D004055 9.8e-29 130.2 95 70.5
arahy.Tifrunner.gnm1.ann1.T22GZM Arachis hypogaea HOM05D003613 ORTHO05D004055 2.2e-28 129.0 84 78.6
Sabra03G0136500 Salix brachista HOM05D003613 ORTHO05D004055 2.2e-28 129.0 85 70.6
MELO3C024884.2 Cucumis melo HOM05D003613 ORTHO05D004055 3.7e-28 128.3 96 68.8
Sed0006875 Sechium edule HOM05D003613 ORTHO05D004055 3.7e-28 128.3 95 70.5
Phvul.002G218400 Phaseolus vulgaris HOM05D003613 ORTHO05D004055 8.3e-28 127.1 95 67.4
Manes.04G099000 Manihot esculenta HOM05D003613 ORTHO05D004055 1.8e-27 125.9 97 69.1
Sed0012530 Sechium edule HOM05D003613 ORTHO05D004055 4.1e-27 124.8 97 69.1
Glyma.07G187000 Glycine max HOM05D003613 ORTHO05D004055 5.4e-27 124.4 92 72.8
FAN02G4453 Fragaria x ananassa HOM05D003613 ORTHO05D004055 9.1e-27 123.6 91 68.1
Glyma.08G062200 Glycine max HOM05D003613 ORTHO05D004055 1.2e-26 123.2 93 71.0
Duzib235G1294 Durio zibethinus HOM05D003613 ORTHO05D004055 2.0e-26 122.5 95 63.2
arahy.Tifrunner.gnm1.ann1.XPM13Z Arachis hypogaea HOM05D003613 ORTHO05D004055 2.7e-26 122.1 77 79.2
Gohir.A06G141700 Gossypium hirsutum HOM05D003613 ORTHO05D004055 2.7e-26 122.1 95 63.2
Lalb_Chr16g0383261 Lupinus albus HOM05D003613 ORTHO05D004055 2.7e-26 122.1 97 71.1
QL12p003368 Quercus lobata HOM05D003613 ORTHO05D004055 3.5e-26 121.7 94 71.3
COL.COLO4_30901 Corchorus olitorius HOM05D003613 ORTHO05D004055 5.9e-26 120.9 96 64.6
ECA232G3259 Erigeron canadensis HOM05D003613 ORTHO05D004055 7.7e-26 120.6 100 63.0
Gohir.D06G146000 Gossypium hirsutum HOM05D003613 ORTHO05D004055 7.7e-26 120.6 95 62.1
Gorai.010G170200 Gossypium raimondii HOM05D003613 ORTHO05D004055 7.7e-26 120.6 95 62.1
Dinv21437 Davidia involucrata HOM05D003613 ORTHO05D004055 1.0e-25 120.2 102 65.7
arahy.Tifrunner.gnm1.ann1.DB50AT Arachis hypogaea HOM05D003613 ORTHO05D004055 1.3e-25 119.8 102 64.7
Eucgr.F03989 Eucalyptus grandis HOM05D003613 ORTHO05D004055 1.3e-25 119.8 97 66.0
Thecc.06G133700 Theobroma cacao HOM05D003613 ORTHO05D004055 1.3e-25 119.8 96 64.6
Gohir.A10G049000 Gossypium hirsutum HOM05D003613 ORTHO05D004055 2.3e-25 119.0 95 63.2
Lalb_Chr19g0125611 Lupinus albus HOM05D003613 ORTHO05D004055 2.3e-25 119.0 95 65.3
Cpa.g.sc68.45 Carica papaya HOM05D003613 ORTHO05D004055 2.9e-25 118.6 92 66.3
Duzib192G0866 Durio zibethinus HOM05D003613 ORTHO05D004055 2.9e-25 118.6 95 63.2
Duzib160G0323 Durio zibethinus HOM05D003613 ORTHO05D004055 3.8e-25 118.2 95 62.1
Gohir.D10G049600 Gossypium hirsutum HOM05D003613 ORTHO05D004055 5.0e-25 117.9 95 62.1
Gorai.011G053100 Gossypium raimondii HOM05D003613 ORTHO05D004055 5.0e-25 117.9 95 62.1
TAR383G0763 Trochodendron aralioides HOM05D003613 ORTHO05D004055 5.0e-25 117.9 102 64.7
Oeu051549.1 Olea europaea HOM05D003613 ORTHO05D004055 8.6e-25 117.1 104 63.5
arahy.Tifrunner.gnm1.ann1.M9YY7V Arachis hypogaea HOM05D003613 ORTHO05D004055 1.1e-24 116.7 102 64.7
QL10p043081 Quercus lobata HOM05D003613 ORTHO05D004055 1.9e-24 115.9 94 68.1
DCAR_025611 Daucus carota HOM05D003613 ORTHO05D004055 3.3e-24 115.2 101 60.4
HanXRQChr04g0100011 Helianthus annuus HOM05D003613 ORTHO05D004055 3.3e-24 115.2 102 62.7
ECA247G1662 Erigeron canadensis HOM05D003613 ORTHO05D004055 9.5e-24 113.6 101 59.4
Oeu033454.1 Olea europaea HOM05D003613 ORTHO05D004055 2.8e-23 112.1 105 60.0
GSVIVG01016088001 Vitis vinifera HOM05D003613 ORTHO05D004055 3.6e-23 111.7 104 58.7
Lalb_Chr09g0327111 Lupinus albus HOM05D003613 ORTHO05D004055 4.7e-23 111.3 95 68.4
vmacro19080 Vaccinium macrocarpon HOM05D003613 ORTHO05D004055 4.7e-23 111.3 103 59.2
Ca_18450_v3 Cicer arietinum L. HOM05D003613 ORTHO05D004055 6.1e-23 110.9 83 68.7
Lsat_1_v5_gn_5_9061 Lactuca sativa HOM05D003613 ORTHO05D004055 6.1e-23 110.9 104 55.8
MSTRG.9389 Avicennia marina HOM05D003613 ORTHO05D004055 8.0e-23 110.5 104 57.7
FAN14G0884 Fragaria x ananassa HOM05D008004 ORTHO05D004055 1.4e-22 109.8 75 72.0
SGA_v2.0_scaffold74G24606 Striga asiatica HOM05D003613 ORTHO05D004055 1.8e-22 109.4 105 59.0
SalBow1G4637 Salvia bowleyana HOM05D003613 ORTHO05D004055 2.3e-22 109.0 105 61.0
Lsat_1_v5_gn_4_84900 Lactuca sativa HOM05D003613 ORTHO05D004055 5.2e-22 107.8 100 58.0
MSTRG.22838 Avicennia marina HOM05D003613 ORTHO05D004055 6.8e-22 107.5 101 58.4
Migut.D01149 Erythranthe guttata HOM05D003613 ORTHO05D004055 8.9e-22 107.1 106 59.4
Nitab4.5_0005437g0020 Nicotiana tabacum HOM05D003613 ORTHO05D004055 8.9e-22 107.1 116 53.4
Rhsim08G0202400 Rhododendron simsii HOM05D003613 ORTHO05D004055 1.2e-21 106.7 102 56.9
Cc04_g05380 Coffea canephora HOM05D003613 ORTHO05D004055 2.0e-21 105.9 102 56.9
HanXRQChr05g0157501 Helianthus annuus HOM05D003613 ORTHO05D004055 2.0e-21 105.9 103 59.2
SGA_v2.0_scaffold515G52657 Striga asiatica HOM05D003613 ORTHO05D004055 2.0e-21 105.9 105 57.1
Aa31LG7G710 Aethionema arabicum HOM05D003613 ORTHO05D004055 3.4e-21 105.1 107 55.1
Rhsim12G0183300 Rhododendron simsii HOM05D003613 ORTHO05D004055 3.4e-21 105.1 102 55.9
ECA246G2284 Erigeron canadensis HOM05D003613 ORTHO05D004055 9.8e-21 103.6 102 57.8
Migut.I00632 Erythranthe guttata HOM05D003613 ORTHO05D004055 9.8e-21 103.6 106 53.8
THA.LOC104813597 Tarenaya hassleriana HOM05D003613 ORTHO05D004055 1.3e-20 103.2 98 56.1
Potri.001G039700 Populus trichocarpa HOM05D003613 ORTHO05D004055 1.7e-20 102.8 73 68.5
FvH4_6g28090 Fragaria vesca HOM05D008004 ORTHO05D011218 2.8e-20 102.1 71 70.4
Peaxi162Scf00195g00118 Petunia axillaris HOM05D003613 ORTHO05D004055 2.8e-20 102.1 80 68.8
MBI14_g16433_MAGBIO Magnolia biondii HOM05D003613 ORTHO05D004055 3.7e-20 101.7 106 54.7
Nn8g40130 Nelumbo nucifera HOM05D003613 ORTHO05D004055 4.9e-20 101.3 101 59.4
TPR.G13916 Trifolium pratense HOM05D003613 ORTHO05D004055 6.3e-20 100.9 75 58.7
MSTRG.11218 Avicennia marina HOM05D003613 ORTHO05D004055 8.3e-20 100.5 101 54.5
Sopen03g036670 Solanum pennellii HOM05D003613 ORTHO05D004055 1.4e-19 99.8 105 54.3
unitig_8.g3041 Utricularia gibba HOM05D003613 ORTHO05D004055 1.4e-19 99.8 104 52.9
AT1G16170 Arabidopsis thaliana HOM05D003613 ORTHO05D004055 1.8e-19 99.4 96 57.3
CAN.G1008.14 Capsicum annuum HOM05D003613 ORTHO05D004055 1.8e-19 99.4 105 53.3
PGSC0003DMG400014217 Solanum tuberosum HOM05D003613 ORTHO05D004055 1.8e-19 99.4 105 53.3
AL1G28300 Arabidopsis lyrata HOM05D003613 ORTHO05D004055 2.4e-19 99.0 96 57.3
unitig_22.g6276 Utricularia gibba HOM05D003613 ORTHO05D004055 2.4e-19 99.0 104 51.9
Lj4g0025384 Lotus japonicus HOM05D003613 ORTHO05D004055 3.1e-19 98.6 88 61.4
CSS0042010 Camellia sinensis var. sinensis HOM05D003613 ORTHO05D004055 5.4e-19 97.8 104 52.9
Sp5g34740 Schrenkiella parvula HOM05D003613 ORTHO05D004055 5.4e-19 97.8 96 56.2
PGSC0003DMG400014438 Solanum tuberosum HOM05D003613 ORTHO05D004055 5.4e-19 97.8 105 55.2
arahy.Tifrunner.gnm1.ann1.LI0G0T Arachis hypogaea HOM05D003613 ORTHO05D004055 7.0e-19 97.4 73 71.2
Carub.0002s2654 Capsella rubella HOM05D003613 ORTHO05D004055 7.0e-19 97.4 96 55.2
Sopen12g021630 Solanum pennellii HOM05D003613 ORTHO05D004055 7.0e-19 97.4 105 54.3
Actinidia36859 Actinidia chinensis HOM05D000338 ORTHO05D003721 9.2e-19 97.1 106 51.9
SHI11349 Sapria himalayana HOM05D003613 ORTHO05D004055 1.2e-18 96.7 90 57.8
Solyc12g042540.1 Solanum lycopersicum HOM05D003613 ORTHO05D004055 1.2e-18 96.7 105 53.3
CARHR073400 Cardamine hirsuta HOM05D003613 ORTHO05D004055 1.6e-18 96.3 96 58.3
Thhalv10019378m.g Eutrema salsugineum HOM05D003613 ORTHO05D004055 1.6e-18 96.3 96 54.2
Aqoxy5G00706 Aquilegia oxysepala HOM05D003613 ORTHO05D004055 2.0e-18 95.9 101 53.5
SEGI_37804 Sequoiadendron giganteum HOM05D003613 ORTHO05D004055 2.0e-18 95.9 83 60.2
A06p12110 Brassica napus HOM05D003613 ORTHO05D004055 2.7e-18 95.5 97 56.7
BraA06t24380Z Brassica rapa HOM05D003613 ORTHO05D004055 2.7e-18 95.5 97 56.7
AT1G79660 Arabidopsis thaliana HOM05D003613 ORTHO05D004055 3.5e-18 95.1 96 54.2
AL2G40350 Arabidopsis lyrata HOM05D003613 ORTHO05D004055 4.5e-18 94.7 96 54.2
BcaC08g47524 Brassica carinata HOM05D003613 ORTHO05D004055 4.5e-18 94.7 97 54.6
Aa31LG4G1310 Aethionema arabicum HOM05D003613 ORTHO05D004055 5.9e-18 94.4 88 56.8
C08p44600 Brassica napus HOM05D003613 ORTHO05D004055 5.9e-18 94.4 100 56.0
BolC8t52006H Brassica oleracea HOM05D003613 ORTHO05D004055 5.9e-18 94.4 100 56.0
Thhalv10009201m.g Eutrema salsugineum HOM05D003613 ORTHO05D004055 5.9e-18 94.4 96 56.2
Sp1g14410 Schrenkiella parvula HOM05D003613 ORTHO05D004055 5.9e-18 94.4 96 56.2
ATR0580G444 Amborella trichopoda HOM05D003613 ORTHO05D004055 7.8e-18 94.0 103 53.4
DCAR_021377 Daucus carota HOM05D003613 ORTHO05D004055 1.0e-17 93.6 98 52.0
CARHR016650 Cardamine hirsuta HOM05D003613 ORTHO05D004055 2.3e-17 92.4 96 56.2
MBI15_g26076_MAGBIO Magnolia biondii HOM05D003613 ORTHO05D004055 2.3e-17 92.4 105 53.3
BcaB02g06598 Brassica carinata HOM05D003613 ORTHO05D004055 3.8e-17 91.7 97 53.6
BraA09t41473Z Brassica rapa HOM05D003613 ORTHO05D004055 3.8e-17 91.7 102 54.9
BcaB03g14503 Brassica carinata HOM05D003613 ORTHO05D004055 6.6e-17 90.9 97 55.7
Os08g0266200 Oryza sativa ssp. japonica HOM05D003613 ORTHO05D004055 1.1e-16 90.1 101 50.5
ATR0068G040 Amborella trichopoda HOM05D003613 ORTHO05D004055 1.5e-16 89.7 103 50.5
Nn2g12477 Nelumbo nucifera HOM05D003613 ORTHO05D004055 1.5e-16 89.7 104 52.9
Nitab4.5_0002700g0020 Nicotiana tabacum HOM05D003613 ORTHO05D004055 1.5e-16 89.7 81 61.7
BcaC08g47525 Brassica carinata HOM05D003613 ORTHO05D004055 2.5e-16 89.0 97 52.6
BolC6t40365H Brassica oleracea HOM05D003613 ORTHO05D004055 2.5e-16 89.0 97 52.6
Carub.0001s1593 Capsella rubella HOM05D003613 ORTHO05D004055 2.5e-16 89.0 96 53.1
BolC5t30160H Brassica oleracea HOM05D003613 ORTHO05D004055 4.3e-16 88.2 96 53.1
Gohir.A09G076160 Gossypium hirsutum HOM05D003613 ORTHO05D004055 4.3e-16 88.2 95 51.6
TAR626G0045 Trochodendron aralioides HOM05D003147 ORTHO05D004055 5.6e-16 87.8 102 52.9
A09p61000 Brassica napus HOM05D003613 ORTHO05D004055 7.3e-16 87.4 97 54.6
A07p44660 Brassica napus HOM05D003613 ORTHO05D004055 9.5e-16 87.0 97 51.5
BraA07t31975Z Brassica rapa HOM05D003613 ORTHO05D004055 9.5e-16 87.0 97 51.5
Gohir.D09G076100 Gossypium hirsutum HOM05D003613 ORTHO05D004055 2.1e-15 85.9 95 49.5
EL10Ac5g12047 Beta vulgaris HOM05D003613 ORTHO05D004055 2.8e-15 85.5 99 51.5
BcaC05g25604 Brassica carinata HOM05D003613 ORTHO05D004055 2.8e-15 85.5 96 52.1
BcaC07g38803 Brassica carinata HOM05D003613 ORTHO05D004055 2.8e-15 85.5 97 51.5
A08p31400 Brassica napus HOM05D003613 ORTHO05D004055 2.8e-15 85.5 100 51.0
C08p17390 Brassica napus HOM05D003613 ORTHO05D004055 2.8e-15 85.5 97 51.5
BolC8t49365H Brassica oleracea HOM05D003613 ORTHO05D004055 2.8e-15 85.5 97 51.5
BraA08t35063Z Brassica rapa HOM05D003613 ORTHO05D004055 2.8e-15 85.5 100 51.0
BcaB03g13047 Brassica carinata HOM05D003613 ORTHO05D004055 3.6e-15 85.1 97 53.6
C05p14290 Brassica napus HOM05D003613 ORTHO05D004055 3.6e-15 85.1 96 52.1
Gorai.006G091300 Gossypium raimondii HOM05D003613 ORTHO05D004055 4.7e-15 84.7 95 49.5
BolC2t08604H Brassica oleracea HOM05D003613 ORTHO05D004055 1.4e-14 83.2 85 55.3
AUR62018676 Chenopodium quinoa HOM05D003613 ORTHO05D004055 3.0e-14 82.0 106 46.2
BcaC03g14996 Brassica carinata HOM05D003613 ORTHO05D004055 4.0e-14 81.6 82 57.3
C02p25300 Brassica napus HOM05D003613 ORTHO05D004055 4.0e-14 81.6 82 57.3
Ah.12g055300 Amaranthus hybridus HOM05D003613 ORTHO05D004055 6.8e-14 80.9 103 50.5
Zm00001eb177920 Zea mays HOM05D003613 ORTHO05D004055 1.2e-13 80.1 98 49.0
BcaC03g17203 Brassica carinata HOM05D003613 ORTHO05D004055 7.5e-13 77.4 79 55.7
BolC2t11219H Brassica oleracea HOM05D003613 ORTHO05D004055 7.5e-13 77.4 79 55.7
Zm00001eb412000 Zea mays HOM05D003613 ORTHO05D004055 7.5e-13 77.4 100 52.0
BolC8t51544H Brassica oleracea HOM05D003613 ORTHO05D004055 1.3e-12 76.6 78 55.1
Pp3c10_10840 Physcomitrium patens HOM05D003613 ORTHO05D004055 2.9e-12 75.5 106 42.5
C08p39730 Brassica napus HOM05D003613 ORTHO05D004055 3.7e-12 75.1 79 53.2
CSS0016880 Camellia sinensis var. sinensis HOM05D003613 ORTHO05D004055 9.2e-11 70.5 80 51.2
Pp3c14_25540 Physcomitrium patens HOM05D003613 ORTHO05D004055 6.0e-10 67.8 65 52.3
DCAR_021376 Daucus carota HOM05D003613 ORTHO05D004055 6.6e-09 64.3 85 47.1
AagrBONN_evm.TU.Sc2ySwM_368.2820 Anthoceros agrestis HOM05D003613 ORTHO05D004055 2.5e-08 62.4 51 54.9
Mapoly0033s0168 Marchantia polymorpha HOM05D000087 ORTHO05D255883 3.3e-08 62.0 78 46.2
SMO001G0027 Selaginella moellendorffii HOM05D003613 ORTHO05D004055 3.3e-08 62.0 52 57.7
SMO307G0037 Selaginella moellendorffii HOM05D000818 ORTHO05D004055 3.3e-08 62.0 52 57.7
Nitab4.5_0002302g0110 Nicotiana tabacum HOM05D003613 ORTHO05D004055 8.0e-07 57.4 46 69.6
Aqoxy1G01707 Aquilegia oxysepala HOM05D003613 ORTHO05D004055 8.9e-06 53.9 45 57.8


User provided reference genes

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