Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.15G062000 Glycine max HOM05D003513 ORTHO05D004660 6.2e-134 481.1 256 100.0
Glyma.13G253000 Glycine max HOM05D003513 ORTHO05D004660 1.4e-98 363.6 256 80.1
VMungo0540G2261 Vigna mungo HOM05D003513 ORTHO05D004660 5.4e-77 292.0 257 68.1
Lj6g0027000 Lotus japonicus HOM05D003513 ORTHO05D004660 1.5e-71 273.9 252 66.3
arahy.Tifrunner.gnm1.ann1.C4ZNB5 Arachis hypogaea HOM05D003513 ORTHO05D004660 8.3e-70 268.1 257 65.4
Medtr2g010510 Medicago truncatula HOM05D003513 ORTHO05D004660 3.1e-69 266.2 252 62.7
arahy.Tifrunner.gnm1.ann1.2E8PRH Arachis hypogaea HOM05D003513 ORTHO05D004660 1.0e-67 261.2 260 63.5
arahy.Tifrunner.gnm1.ann1.K4QFJX Arachis hypogaea HOM05D003513 ORTHO05D004660 6.6e-67 258.5 260 62.7
Lj6g0027758 Lotus japonicus HOM05D003513 ORTHO05D004660 1.1e-66 257.7 283 59.0
Lalb_Chr18g0060191 Lupinus albus HOM05D003513 ORTHO05D004660 3.3e-66 256.1 258 62.0
arahy.Tifrunner.gnm1.ann1.SQB86K Arachis hypogaea HOM05D003513 ORTHO05D004660 9.5e-66 254.6 260 61.5
Psat1g212080 Pisum sativum HOM05D003513 ORTHO05D004660 5.2e-64 248.8 236 62.7
Ca_00197_v3 Cicer arietinum L. HOM05D000871 ORTHO05D000770 4.3e-58 229.2 249 55.8
Cfa004752 Carpinus fangiana HOM05D003513 ORTHO05D004660 3.5e-52 209.5 260 53.1
Lj1g0004946 Lotus japonicus HOM05D003513 ORTHO05D004660 2.3e-51 206.8 254 53.1
Prupe.8G155900 Prunus persica HOM05D003513 ORTHO05D004660 3.9e-51 206.1 256 55.1
TWI14G0477 Tripterygium wilfordii HOM05D003513 ORTHO05D004660 5.1e-51 205.7 261 50.6
QL11p027784 Quercus lobata HOM05D003513 ORTHO05D004660 6.6e-51 205.3 260 52.7
vmacro01922 Vaccinium macrocarpon HOM05D003513 ORTHO05D004660 1.1e-50 204.5 264 51.9
TWI23G0398 Tripterygium wilfordii HOM05D003513 ORTHO05D004660 1.9e-50 203.8 260 50.0
RcHm_v2.0_Chr6g0247131 Rosa chinensis HOM05D003513 ORTHO05D004660 7.3e-50 201.8 253 51.0
CiPaw.16G055200 Carya illinoinensis HOM05D003513 ORTHO05D004660 1.6e-49 200.7 255 52.2
Duzib052G1139 Durio zibethinus HOM05D003513 ORTHO05D004660 3.6e-49 199.5 260 50.4
Cfa003376 Carpinus fangiana HOM05D003513 ORTHO05D004660 4.7e-49 199.1 259 51.7
COL.COLO4_17824 Corchorus olitorius HOM05D003513 ORTHO05D004660 8.1e-49 198.4 260 50.0
CANSAT11G1387 Cannabis sativa HOM05D003513 ORTHO05D004660 1.4e-48 197.6 254 50.8
MD05G1110900 Malus domestica HOM05D003513 ORTHO05D004660 1.8e-48 197.2 255 52.9
PGR042G0778 Punica granatum HOM05D003513 ORTHO05D004660 2.3e-48 196.8 255 51.0
Duzib248G1448 Durio zibethinus HOM05D003513 ORTHO05D004660 1.2e-47 194.5 260 50.0
Gohir.A03G213100 Gossypium hirsutum HOM05D003513 ORTHO05D004660 1.5e-47 194.1 261 52.1
Gohir.D02G234600 Gossypium hirsutum HOM05D003513 ORTHO05D004660 2.0e-47 193.7 250 52.8
FAN15G2646 Fragaria x ananassa HOM05D003513 ORTHO05D004660 3.4e-47 193.0 256 50.4
Gorai.005G262600 Gossypium raimondii HOM05D003513 ORTHO05D004660 5.8e-47 192.2 251 51.4
Eucgr.I02512 Eucalyptus grandis HOM05D003513 ORTHO05D004660 9.9e-47 191.4 256 50.4
Thecc.02G033900 Theobroma cacao HOM05D003513 ORTHO05D004660 1.7e-46 190.7 260 49.6
FAN20G2897 Fragaria x ananassa HOM05D003513 ORTHO05D004660 2.2e-46 190.3 256 50.0
Manes.07G049900 Manihot esculenta HOM05D003513 ORTHO05D004660 3.7e-46 189.5 254 49.6
CSS0016653 Camellia sinensis var. sinensis HOM05D003513 ORTHO05D004660 4.9e-46 189.1 265 47.9
MSTRG.8971 Avicennia marina HOM05D003513 ORTHO05D004660 8.3e-46 188.3 261 49.4
FAN27G0638 Fragaria x ananassa HOM05D003513 ORTHO05D004660 8.3e-46 188.3 258 49.2
FvH4_2g02710 Fragaria vesca HOM05D003513 ORTHO05D004660 1.1e-45 188.0 254 50.0
Nn4g22684 Nelumbo nucifera HOM05D003513 ORTHO05D004660 1.1e-45 188.0 314 45.9
Hma1.2p1_0661F.1_g197860 Hydrangea macrophylla HOM05D003513 ORTHO05D004660 1.4e-45 187.6 262 47.7
Rhsim11G0147300 Rhododendron simsii HOM05D003513 ORTHO05D004660 1.4e-45 187.6 290 45.9
GSVIVG01036987001 Vitis vinifera HOM05D003513 ORTHO05D004660 1.4e-45 187.6 263 49.8
Actinidia02426 Actinidia chinensis HOM05D003513 ORTHO05D004660 1.9e-45 187.2 264 48.9
Phvul.006G197800 Phaseolus vulgaris HOM05D003513 ORTHO05D004660 1.9e-45 187.2 185 63.2
Aa31LG8G12720 Aethionema arabicum HOM05D003513 ORTHO05D004660 2.4e-45 186.8 259 49.4
CsaV3_7G001360 Cucumis sativus L. HOM05D003513 ORTHO05D004660 4.1e-45 186.0 255 49.8
Ciclev10028868m.g Citrus clementina HOM05D003513 ORTHO05D004660 1.2e-44 184.5 254 50.4
MELO3C013317.2 Cucumis melo HOM05D003513 ORTHO05D004660 1.2e-44 184.5 256 50.8
FAN24G3528 Fragaria x ananassa HOM05D003513 ORTHO05D004660 1.2e-44 184.5 257 48.2
Potri.009G082200 Populus trichocarpa HOM05D003513 ORTHO05D004660 1.2e-44 184.5 257 48.2
MSTRG.8970 Avicennia marina HOM05D003513 ORTHO05D004660 1.6e-44 184.1 261 48.3
ClCG02G003790 Citrullus lanatus HOM05D003513 ORTHO05D004660 1.6e-44 184.1 255 49.8
Lj9A339T51 Lonicera japonica HOM05D003513 ORTHO05D004660 1.6e-44 184.1 260 47.3
Sp3g05980 Schrenkiella parvula HOM05D003513 ORTHO05D004660 2.7e-44 183.3 255 49.8
Sabra09G0063800 Salix brachista HOM05D003513 ORTHO05D004660 1.0e-43 181.4 255 48.6
Actinidia00338 Actinidia chinensis HOM05D003513 ORTHO05D004660 1.7e-43 180.6 264 48.1
TAR375G0591 Trochodendron aralioides HOM05D003513 ORTHO05D004660 2.3e-43 180.3 259 49.4
EL10Ac4g09206 Beta vulgaris HOM05D003513 ORTHO05D004660 8.6e-43 178.3 259 46.7
CiPaw.05G024600 Carya illinoinensis HOM05D003513 ORTHO05D004660 8.6e-43 178.3 254 50.4
Atru.chr4.2879 Acer truncatum HOM05D003513 ORTHO05D004660 3.3e-42 176.4 252 49.6
ECA236G2279 Erigeron canadensis HOM05D003513 ORTHO05D004660 3.3e-42 176.4 257 46.3
Oeu010478.1 Olea europaea HOM05D003513 ORTHO05D004660 1.2e-41 174.5 258 46.1
Potri.001G287900 Populus trichocarpa HOM05D003513 ORTHO05D004660 1.6e-41 174.1 259 47.9
Sopen01g048910 Solanum pennellii HOM05D003513 ORTHO05D004660 1.6e-41 174.1 264 44.3
Solyc01g106560.4 Solanum lycopersicum HOM05D003513 ORTHO05D004660 8.1e-41 171.8 264 45.1
Sed0007617 Sechium edule HOM05D003513 ORTHO05D004660 1.4e-40 171.0 244 49.2
PGSC0003DMG400005104 Solanum tuberosum HOM05D003513 ORTHO05D004660 1.8e-40 170.6 264 43.2
SGA_v2.0_scaffold32G12967 Striga asiatica HOM05D003513 ORTHO05D004660 3.1e-40 169.9 255 47.1
PSO384G0236 Papaver somniferum HOM05D003513 ORTHO05D004660 4.0e-40 169.5 271 44.6
AL3G45960 Arabidopsis lyrata HOM05D003513 ORTHO05D004660 5.2e-40 169.1 254 47.2
MD10G1114400 Malus domestica HOM05D003513 ORTHO05D004660 5.2e-40 169.1 244 49.6
THA.LOC104807196 Tarenaya hassleriana HOM05D003513 ORTHO05D004660 5.2e-40 169.1 247 48.6
SalBow6G6243 Salvia bowleyana HOM05D003513 ORTHO05D004660 1.5e-39 167.5 253 45.5
Dinv17746 Davidia involucrata HOM05D003513 ORTHO05D004660 2.0e-39 167.2 252 48.0
Oeu059873.1 Olea europaea HOM05D003513 ORTHO05D004660 2.0e-39 167.2 259 45.2
Cc02_g20350 Coffea canephora HOM05D003513 ORTHO05D004660 2.6e-39 166.8 265 46.0
Peaxi162Scf00016g03328 Petunia axillaris HOM05D003513 ORTHO05D004660 5.8e-39 165.6 267 44.9
DCAR_029853 Daucus carota HOM05D003513 ORTHO05D004660 7.6e-39 165.2 264 43.6
C03p42610 Brassica napus HOM05D003513 ORTHO05D004660 9.9e-39 164.9 257 44.0
Os07g0213400 Oryza sativa ssp. japonica HOM05D003513 ORTHO05D004660 1.7e-38 164.1 256 45.3
PSO339G4304 Papaver somniferum HOM05D003513 ORTHO05D004660 2.2e-38 163.7 255 45.9
unitig_0.g631 Utricularia gibba HOM05D003513 ORTHO05D004660 2.2e-38 163.7 249 44.6
Lsat_1_v5_gn_7_84220 Lactuca sativa HOM05D003513 ORTHO05D004660 2.9e-38 163.3 263 45.2
MBI18_g04900_MAGBIO Magnolia biondii HOM05D003513 ORTHO05D004660 3.8e-38 162.9 260 45.8
BcaC09g52179 Brassica carinata HOM05D003513 ORTHO05D004660 9.2e-37 158.3 263 44.9
BolC1t00484H Brassica oleracea HOM05D003513 ORTHO05D004660 9.2e-37 158.3 263 44.9
Zm00001eb325060 Zea mays HOM05D003513 ORTHO05D004660 9.2e-37 158.3 250 45.2
TPR.G22787 Trifolium pratense HOM05D003513 ORTHO05D004660 2.1e-36 157.1 153 60.8
C01p05020 Brassica napus HOM05D003513 ORTHO05D004660 4.6e-36 156.0 263 44.5
ATR0681G195 Amborella trichopoda HOM05D003513 ORTHO05D004660 6.0e-36 155.6 254 44.9
A03p35030 Brassica napus HOM05D003513 ORTHO05D004660 6.0e-36 155.6 257 41.6
Aqoxy5G03939 Aquilegia oxysepala HOM05D003513 ORTHO05D004660 7.8e-36 155.2 261 44.8
MBI18_g12443_MAGBIO Magnolia biondii HOM05D003513 ORTHO05D004660 1.7e-35 154.1 264 43.9
Carub.0003s2847 Capsella rubella HOM05D003513 ORTHO05D004660 2.3e-35 153.7 246 43.5
BraA03t12683Z Brassica rapa HOM05D003513 ORTHO05D004660 6.6e-35 152.1 257 41.6
Sabra16G0180200 Salix brachista HOM05D003513 ORTHO05D004660 1.9e-34 150.6 284 41.2
AL7G17790 Arabidopsis lyrata HOM05D003513 ORTHO05D004660 7.3e-34 148.7 258 43.0
BolC3t16531H Brassica oleracea HOM05D003513 ORTHO05D004660 7.3e-34 148.7 259 42.1
SHI04900 Sapria himalayana HOM05D003513 ORTHO05D004660 7.3e-34 148.7 236 44.5
HPP92_011751 Vanilla planifolia HOM05D003513 ORTHO05D004660 1.2e-33 147.9 251 45.8
BraA01t00446Z Brassica rapa HOM05D003513 ORTHO05D004660 1.6e-33 147.5 260 44.6
Sp7g31420 Schrenkiella parvula HOM05D003513 ORTHO05D004660 1.6e-33 147.5 263 41.4
AUR62005013 Chenopodium quinoa HOM05D003513 ORTHO05D004660 8.1e-33 145.2 256 41.0
SEGI_16177 Sequoiadendron giganteum HOM05D003513 ORTHO05D004660 5.3e-32 142.5 256 43.8
BcaB07g32937 Brassica carinata HOM05D003513 ORTHO05D004660 6.9e-32 142.1 234 43.2
A01p04630 Brassica napus HOM05D003513 ORTHO05D004660 1.5e-31 141.0 259 42.9
HanXRQChr17g0550541 Helianthus annuus HOM05D003513 ORTHO05D004660 4.4e-31 139.4 249 43.8
CDE04G2077 Ceratophyllum demersum HOM05D000016 ORTHO05D000538 1.3e-30 137.9 260 40.8
Dinv03362 Davidia involucrata HOM05D003513 ORTHO05D004660 1.7e-30 137.5 202 47.0
AT4G33690 Arabidopsis thaliana HOM05D003513 ORTHO05D004660 1.9e-29 134.0 244 41.0
Atru.chr5.2163 Acer truncatum HOM05D003513 ORTHO05D004660 2.1e-28 130.6 197 47.2
AUR62000955 Chenopodium quinoa HOM05D003513 ORTHO05D004660 4.6e-28 129.4 256 35.5
Cpa.g.sc20.72 Carica papaya HOM05D003513 ORTHO05D004660 1.0e-27 128.3 198 47.5
CDE07G1727 Ceratophyllum demersum HOM05D003513 ORTHO05D004660 1.0e-27 128.3 257 40.5
Carub.0007s0673 Capsella rubella HOM05D003513 ORTHO05D004660 1.7e-27 127.5 143 53.8
SMO119G0189 Selaginella moellendorffii HOM05D003513 ORTHO05D004660 7.3e-26 122.1 225 37.3
SEGI_38183 Sequoiadendron giganteum HOM05D003513 ORTHO05D004660 9.6e-26 121.7 247 40.9
HPP92_025257 Vanilla planifolia HOM05D003513 ORTHO05D004660 2.1e-25 120.6 204 39.7
AagrBONN_evm.TU.Sc2ySwM_289.2 Anthoceros agrestis HOM05D003513 ORTHO05D004660 6.2e-25 119.0 215 42.8
AagrBONN_evm.TU.Sc2ySwM_362.2667 Anthoceros agrestis HOM05D003513 ORTHO05D004660 6.2e-25 119.0 215 42.8
Mapoly0037s0029 Marchantia polymorpha HOM05D003513 ORTHO05D004660 8.1e-25 118.6 252 40.5
Glyma.07G229300 Glycine max HOM05D003513 ORTHO05D004660 1.8e-24 117.5 106 67.0
BraA01t02793Z Brassica rapa HOM05D004336 ORTHO05D004660 2.4e-24 117.1 218 44.5
Nitab4.5_0001477g0150 Nicotiana tabacum HOM05D003513 ORTHO05D004660 2.2e-22 110.5 264 36.0
A05p21550 Brassica napus HOM05D003513 ORTHO05D004660 8.4e-22 108.6 234 37.2
BraA05t21075Z Brassica rapa HOM05D003513 ORTHO05D004660 8.4e-22 108.6 234 37.2
BcaC04g20358 Brassica carinata HOM05D003513 ORTHO05D004660 1.9e-21 107.5 216 39.8
TAR629G2534 Trochodendron aralioides HOM05D003513 ORTHO05D004660 3.2e-21 106.7 102 62.7
BcaB02g10961 Brassica carinata HOM05D003513 ORTHO05D004660 4.2e-21 106.3 84 67.9
Pp3c17_21630 Physcomitrium patens HOM05D003513 ORTHO05D004660 7.1e-21 105.5 248 35.1
BcaB04g17698 Brassica carinata HOM05D003513 ORTHO05D004660 1.6e-20 104.4 247 37.7
Eucgr.L02047 Eucalyptus grandis HOM05D003513 ORTHO05D004660 3.3e-18 96.7 191 40.8
Hund24144 Selenicereus undatus HOM05D003513 ORTHO05D004660 5.6e-18 95.9 196 38.3
Sc21g0000900 Simmondsia chinensis HOM05D003513 ORTHO05D004660 5.6e-18 95.9 199 38.2
Nitab4.5_0007763g0010 Nicotiana tabacum HOM05D003513 ORTHO05D004660 7.4e-18 95.5 208 37.0
A04p04130 Brassica napus HOM05D003513 ORTHO05D004660 9.6e-18 95.1 233 34.8
A09p29610 Brassica napus HOM05D003513 ORTHO05D004660 1.6e-17 94.4 233 37.3
BcaC08g44431 Brassica carinata HOM05D003513 ORTHO05D013524 1.8e-16 90.9 232 34.9
A08p11320 Brassica napus HOM05D003513 ORTHO05D004660 3.1e-16 90.1 63 71.4
A10p16400 Brassica napus HOM05D003513 ORTHO05D004660 3.1e-16 90.1 63 71.4
C06p15560 Brassica napus HOM05D003513 ORTHO05D004660 3.1e-16 90.1 63 71.4
C08p23080 Brassica napus HOM05D003513 ORTHO05D004660 3.1e-16 90.1 63 71.4
CAN.G192.6 Capsicum annuum HOM05D003513 ORTHO05D004660 1.2e-15 88.2 211 37.9
Thhalv10021452m.g Eutrema salsugineum HOM05D003513 ORTHO05D004660 1.2e-15 88.2 133 42.9
A09p33590 Brassica napus HOM05D003513 ORTHO05D004660 1.5e-15 87.8 56 78.6
C06p18710 Brassica napus HOM05D003513 ORTHO05D004660 1.5e-15 87.8 58 74.1
A03p61430 Brassica napus HOM05D003513 ORTHO05D004660 4.5e-15 86.3 56 76.8
BraA03t15374Z Brassica rapa HOM05D003513 ORTHO05D004660 4.5e-15 86.3 233 33.0
BraA09t38150Z Brassica rapa HOM05D003513 ORTHO05D004660 4.5e-15 86.3 56 76.8
A03p66860 Brassica napus HOM05D003513 ORTHO05D004660 5.8e-15 85.9 82 58.5
Migut.B00497 Erythranthe guttata HOM05D003513 ORTHO05D004660 3.8e-14 83.2 144 41.7
CARHR105270 Cardamine hirsuta HOM05D003513 ORTHO05D004660 7.1e-13 79.0 189 37.0
C01p31670 Brassica napus HOM05D003513 ORTHO05D015800 4.6e-12 76.3 54 70.4
BolC8t52234H Brassica oleracea HOM05D003513 ORTHO05D004660 6.0e-12 75.9 236 32.2
A05p23280 Brassica napus HOM05D003513 ORTHO05D004660 6.7e-11 72.4 46 76.1
C08p46960 Brassica napus HOM05D003513 ORTHO05D013524 6.7e-11 72.4 236 31.8
BraA05t21192Z Brassica rapa HOM05D003513 ORTHO05D004660 6.7e-11 72.4 46 76.1
TWI59G0638 Tripterygium wilfordii HOM05D003513 ORTHO05D004660 1.5e-10 71.2 76 55.3
Zm00001eb303370 Zea mays HOM05D003513 ORTHO05D004660 2.1e-09 67.4 181 34.3
Gohir.A01G179633 Gossypium hirsutum HOM05D003513 ORTHO05D004660 4.8e-09 66.2 51 62.7
BcaB06g26524 Brassica carinata HOM05D005554 ORTHO05D021652 2.4e-08 63.9 74 50.0
Gorai.002G212100 Gossypium raimondii HOM05D003513 ORTHO05D004660 1.2e-07 61.6 51 60.8
TAR636G1841 Trochodendron aralioides HOM05D003513 ORTHO05D004660 1.2e-07 61.6 88 50.0
BcaC06g33105 Brassica carinata HOM05D005554 ORTHO05D021652 2.6e-07 60.5 105 41.0
BcaC09g52177 Brassica carinata HOM05D003513 ORTHO05D004660 4.5e-07 59.7 78 44.9
BolC1t03102H Brassica oleracea HOM05D003531 ORTHO05D015800 2.2e-06 57.4 38 73.7


User provided reference genes

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