Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.15G048700 Glycine max HOM05D005050 ORTHO05D006198 6.6e-206 720.7 427 100.0
Glyma.08G184100 Glycine max HOM05D005050 ORTHO05D006198 6.9e-179 630.9 426 86.6
VMungo0251G1671 Vigna mungo HOM05D005050 ORTHO05D006198 1.4e-176 623.2 428 82.9
Phvul.006G211700 Phaseolus vulgaris HOM05D005050 ORTHO05D006198 1.6e-175 619.8 429 84.1
Lj6g0001640 Lotus japonicus HOM05D005050 ORTHO05D006198 3.6e-167 592.0 429 78.1
Medtr2g007800 Medicago truncatula HOM05D005050 ORTHO05D006198 6.1e-159 564.7 424 77.8
TPR.G2134 Trifolium pratense HOM05D005050 ORTHO05D006198 2.0e-157 559.7 427 76.8
arahy.Tifrunner.gnm1.ann1.V19TN9 Arachis hypogaea HOM05D005050 ORTHO05D006198 2.3e-150 536.2 422 72.5
arahy.Tifrunner.gnm1.ann1.X2Y1CG Arachis hypogaea HOM05D005050 ORTHO05D006198 6.7e-150 534.6 422 72.3
Lalb_Chr12g0208631 Lupinus albus HOM05D005050 ORTHO05D006198 2.4e-139 499.6 424 68.6
Thecc.02G041900 Theobroma cacao HOM05D005050 ORTHO05D006198 2.4e-139 499.6 371 74.7
Gohir.A01G001100 Gossypium hirsutum HOM05D005050 ORTHO05D006198 2.9e-137 492.7 371 73.0
Gorai.002G001300 Gossypium raimondii HOM05D005050 ORTHO05D006198 1.9e-136 490.0 371 72.8
QL11p019153 Quercus lobata HOM05D005050 ORTHO05D006198 4.2e-136 488.8 374 73.0
CiPaw.05G042200 Carya illinoinensis HOM05D005050 ORTHO05D006198 9.4e-136 487.6 374 74.9
COL.COLO4_17901 Corchorus olitorius HOM05D005050 ORTHO05D006198 1.6e-135 486.9 372 73.4
arahy.Tifrunner.gnm1.ann1.UX2R4L Arachis hypogaea HOM05D005050 ORTHO05D006198 8.0e-135 484.6 430 68.4
Cfa005552 Carpinus fangiana HOM05D005050 ORTHO05D006198 1.4e-134 483.8 374 72.7
Gohir.D01G000800 Gossypium hirsutum HOM05D005050 ORTHO05D006198 1.8e-134 483.4 371 71.7
Cpa.g.sc2.30 Carica papaya HOM05D005050 ORTHO05D006198 2.3e-134 483.0 376 73.4
Duzib052G0527 Durio zibethinus HOM05D005050 ORTHO05D006198 2.0e-133 479.9 371 72.5
RcHm_v2.0_Chr7g0223331 Rosa chinensis HOM05D005050 ORTHO05D006198 1.3e-132 477.2 422 66.8
TAR628G0295 Trochodendron aralioides HOM05D005050 ORTHO05D006198 2.2e-132 476.5 421 66.7
TWI59G1202 Tripterygium wilfordii HOM05D005050 ORTHO05D006198 2.8e-132 476.1 426 64.8
Prupe.1G564400 Prunus persica HOM05D005050 ORTHO05D006198 4.8e-132 475.3 373 73.7
FAN13G0813 Fragaria x ananassa HOM05D005050 ORTHO05D006198 1.1e-131 474.2 429 65.7
arahy.Tifrunner.gnm1.ann1.HMQ04Z Arachis hypogaea HOM05D005050 ORTHO05D006198 2.4e-131 473.0 425 66.8
FvH4_5g29810 Fragaria vesca HOM05D005050 ORTHO05D006198 3.1e-131 472.6 377 72.9
Manes.10G132900 Manihot esculenta HOM05D005050 ORTHO05D006198 5.4e-131 471.9 369 70.2
FAN04G2386 Fragaria x ananassa HOM05D005050 ORTHO05D006198 9.1e-131 471.1 429 65.5
Eucgr.G00618 Eucalyptus grandis HOM05D005050 ORTHO05D006198 4.5e-130 468.8 420 64.3
FAN18G3347 Fragaria x ananassa HOM05D005050 ORTHO05D006198 4.5e-130 468.8 429 66.4
CsaV3_3G018690 Cucumis sativus L. HOM05D005050 ORTHO05D006198 2.9e-129 466.1 374 71.4
Actinidia39062 Actinidia chinensis HOM05D005050 ORTHO05D006198 1.5e-128 463.8 424 64.6
MELO3C019500.2 Cucumis melo HOM05D005050 ORTHO05D006198 1.9e-128 463.4 367 71.9
GSVIVG01029689001 Vitis vinifera HOM05D005050 ORTHO05D006198 2.5e-128 463.0 431 63.3
Ciclev10001338m.g Citrus clementina HOM05D005050 ORTHO05D006198 1.6e-127 460.3 421 63.2
Dinv19345 Davidia involucrata HOM05D005050 ORTHO05D006198 1.6e-127 460.3 373 70.2
CANSAT11G1507 Cannabis sativa HOM05D005050 ORTHO05D006198 2.1e-127 459.9 374 72.2
CSS0001826 Camellia sinensis var. sinensis HOM05D005050 ORTHO05D006198 3.6e-127 459.1 420 64.3
Sed0002635 Sechium edule HOM05D005050 ORTHO05D006198 6.1e-127 458.4 373 70.0
ClCG05G009900 Citrullus lanatus HOM05D005050 ORTHO05D006198 1.0e-126 457.6 371 70.4
MD15G1419700 Malus domestica HOM05D005050 ORTHO05D006198 9.8e-125 451.1 400 67.2
Atru.chr6.1005 Acer truncatum HOM05D005050 ORTHO05D006198 2.2e-124 449.9 377 71.1
Nn1g08554 Nelumbo nucifera HOM05D005050 ORTHO05D006198 2.8e-124 449.5 372 69.9
Rhsim11G0132400 Rhododendron simsii HOM05D005050 ORTHO05D006198 6.3e-124 448.4 404 66.8
TWI23G0447 Tripterygium wilfordii HOM05D005050 ORTHO05D006198 1.4e-123 447.2 417 64.0
PGR042G1149 Punica granatum HOM05D005050 ORTHO05D006198 5.4e-123 445.3 374 68.2
MSTRG.16540 Avicennia marina HOM05D005050 ORTHO05D006198 1.2e-122 444.1 376 68.4
TWI14G0535 Tripterygium wilfordii HOM05D005050 ORTHO05D006198 1.6e-122 443.7 429 61.3
Hma1.2p1_0557F.1_g178270 Hydrangea macrophylla HOM05D005050 ORTHO05D006198 4.5e-122 442.2 374 69.5
MD08G1227300 Malus domestica HOM05D005050 ORTHO05D006198 6.6e-121 438.3 423 63.6
Sabra01G0160800 Salix brachista HOM05D005050 ORTHO05D006198 6.6e-121 438.3 370 67.8
Sed0013576 Sechium edule HOM05D005050 ORTHO05D006198 7.3e-120 434.9 371 68.2
Cc02_g22180 Coffea canephora HOM05D005050 ORTHO05D006198 2.3e-118 429.9 380 68.4
HanXRQChr03g0066561 Helianthus annuus HOM05D005050 ORTHO05D006198 3.1e-118 429.5 375 67.5
FAN08G2278 Fragaria x ananassa HOM05D005050 ORTHO05D006198 4.4e-117 425.6 429 61.3
PSO170G5110 Papaver somniferum HOM05D005050 ORTHO05D006198 3.2e-115 419.5 378 67.2
CiPaw.06G149400 Carya illinoinensis HOM05D005050 ORTHO05D006198 4.1e-115 419.1 371 69.0
Thhalv10007720m.g Eutrema salsugineum HOM05D005050 ORTHO05D006198 4.1e-115 419.1 369 66.4
SGA_v2.0_scaffold1G00335 Striga asiatica HOM05D005050 ORTHO05D006198 1.6e-114 417.2 400 62.0
Carub.0001s1495 Capsella rubella HOM05D005050 ORTHO05D006198 3.5e-114 416.0 370 67.0
ECA240G2670 Erigeron canadensis HOM05D005050 ORTHO05D006198 3.5e-114 416.0 423 59.1
Nn5g27962 Nelumbo nucifera HOM05D005050 ORTHO05D006198 4.6e-114 415.6 372 66.1
AT1G15200 Arabidopsis thaliana HOM05D005050 ORTHO05D006198 7.8e-114 414.8 371 67.1
MBI06_g01048_MAGBIO Magnolia biondii HOM05D005050 ORTHO05D006198 2.3e-113 413.3 373 66.0
AUR62025851 Chenopodium quinoa HOM05D005050 ORTHO05D006198 1.1e-112 411.0 369 63.7
Lsat_1_v5_gn_9_116221 Lactuca sativa HOM05D005050 ORTHO05D006198 1.5e-112 410.6 387 63.0
PSO782G5384 Papaver somniferum HOM05D005050 ORTHO05D006198 2.5e-112 409.8 378 66.7
THA.LOC104805935 Tarenaya hassleriana HOM05D005050 ORTHO05D006198 7.3e-112 408.3 368 64.7
Sp1g13510 Schrenkiella parvula HOM05D005050 ORTHO05D006198 2.8e-111 406.4 370 64.6
Migut.B00660 Erythranthe guttata HOM05D005050 ORTHO05D006198 6.2e-111 405.2 373 64.6
Hma1.2p1_0557F.1_g178260 Hydrangea macrophylla HOM05D005050 ORTHO05D006198 4.0e-110 402.5 446 57.6
BcaC05g25448 Brassica carinata HOM05D005050 ORTHO05D006198 2.6e-109 399.8 375 63.7
C05p13300 Brassica napus HOM05D005050 ORTHO05D006198 2.6e-109 399.8 375 63.7
BcaB02g06585 Brassica carinata HOM05D005050 ORTHO05D006198 1.7e-108 397.1 370 63.5
Hund13068 Selenicereus undatus HOM05D005050 ORTHO05D006198 2.9e-108 396.4 365 63.8
AL1G27280 Arabidopsis lyrata HOM05D005050 ORTHO05D006198 4.9e-108 395.6 408 60.8
Solyc01g104560.3 Solanum lycopersicum HOM05D005050 ORTHO05D006198 6.4e-108 395.2 369 64.5
Aqoxy5G02481 Aquilegia oxysepala HOM05D005050 ORTHO05D006198 3.2e-107 392.9 436 57.1
A06p11180 Brassica napus HOM05D005050 ORTHO05D006198 9.2e-107 391.3 373 64.6
Duzib132G0934 Durio zibethinus HOM05D005050 ORTHO05D006198 1.6e-106 390.6 422 56.9
HPP92_002179 Vanilla planifolia HOM05D005050 ORTHO05D006198 4.6e-106 389.0 385 60.5
PGSC0003DMG400029778 Solanum tuberosum HOM05D005050 ORTHO05D006198 1.0e-105 387.9 375 62.1
HPP92_002226 Vanilla planifolia HOM05D005050 ORTHO05D006198 2.3e-105 386.7 386 60.9
CDE12G0224 Ceratophyllum demersum HOM05D005050 ORTHO05D006198 3.3e-104 382.9 369 65.9
Nitab4.5_0003071g0060 Nicotiana tabacum HOM05D005050 ORTHO05D006198 4.7e-103 379.0 374 62.3
Sopen01g047070 Solanum pennellii HOM05D005050 ORTHO05D006198 1.1e-102 377.9 369 62.9
CAN.G1352.15 Capsicum annuum HOM05D005050 ORTHO05D006198 1.4e-102 377.5 374 60.2
Potri.003G021900 Populus trichocarpa HOM05D005050 ORTHO05D006198 1.8e-102 377.1 371 59.0
Lj9A312G31 Lonicera japonica HOM05D005050 ORTHO05D006198 2.2e-100 370.2 372 61.8
SalBow5G1811 Salvia bowleyana HOM05D005050 ORTHO05D006198 9.2e-99 364.8 379 60.2
SalBow5G5549 Salvia bowleyana HOM05D005050 ORTHO05D006198 9.2e-99 364.8 379 60.2
Psat1g219800 Pisum sativum HOM05D005050 ORTHO05D006198 2.1e-98 363.6 267 79.4
Aa31LG1G10 Aethionema arabicum HOM05D005050 ORTHO05D006198 2.7e-98 363.2 372 59.9
Dinv24255 Davidia involucrata HOM05D005050 ORTHO05D006198 2.3e-97 360.1 299 69.9
Nitab4.5_0009907g0040 Nicotiana tabacum HOM05D005050 ORTHO05D006198 3.9e-97 359.4 377 59.2
SHI16611 Sapria himalayana HOM05D005050 ORTHO05D006198 6.6e-97 358.6 378 58.2
Lalb_Chr07g0189191 Lupinus albus HOM05D005050 ORTHO05D006198 8.6e-97 358.2 304 69.1
ATR0121G012 Amborella trichopoda HOM05D005050 ORTHO05D006198 4.3e-96 355.9 380 60.5
TAR161G0004 Trochodendron aralioides HOM05D005050 ORTHO05D006198 1.2e-95 354.4 280 69.3
DCAR_029238 Daucus carota HOM05D005050 ORTHO05D006198 2.8e-95 353.2 348 61.5
Zm00001eb216800 Zea mays HOM05D005050 ORTHO05D006198 2.4e-94 350.1 371 57.7
Ah.10g032530 Amaranthus hybridus HOM05D005050 ORTHO05D006198 1.7e-92 344.0 372 55.9
EL10Ac2g03230 Beta vulgaris HOM05D005050 ORTHO05D006198 1.1e-91 341.3 372 54.8
Peaxi162Scf00011g00032 Petunia axillaris HOM05D005050 ORTHO05D006198 3.2e-91 339.7 424 51.9
AUR62029865 Chenopodium quinoa HOM05D005050 ORTHO05D006198 3.5e-90 336.3 306 62.7
BcaNung05518 Brassica carinata HOM05D005050 ORTHO05D006198 1.1e-88 331.3 377 58.1
CDE01G0517 Ceratophyllum demersum HOM05D005050 ORTHO05D006198 1.8e-86 323.9 377 58.1
Sc10g0004970 Simmondsia chinensis HOM05D005050 ORTHO05D006198 1.1e-80 304.7 327 58.4
Oeu000199.1 Olea europaea HOM05D005050 ORTHO05D006198 4.3e-80 302.8 382 54.5
unitig_699.g19082 Utricularia gibba HOM05D005050 ORTHO05D006198 5.6e-80 302.4 408 49.0
vmacro01791 Vaccinium macrocarpon HOM05D005050 ORTHO05D006198 2.1e-79 300.4 263 65.8
arahy.Tifrunner.gnm1.ann1.5TH0SF Arachis hypogaea HOM05D005050 ORTHO05D006198 1.1e-78 298.1 269 70.6
Potri.001G208200 Populus trichocarpa HOM05D005050 ORTHO05D006198 1.3e-76 291.2 272 66.2
C08p45110 Brassica napus HOM05D005050 ORTHO05D006198 1.9e-72 277.3 329 55.0
CARHR015720 Cardamine hirsuta HOM05D005050 ORTHO05D006198 2.1e-71 273.9 277 63.2
unitig_27.g24937 Utricularia gibba HOM05D005050 ORTHO05D006198 6.2e-71 272.3 264 62.9
AagrBONN_evm.TU.Sc2ySwM_344.3376 Anthoceros agrestis HOM05D005050 ORTHO05D006198 4.0e-70 269.6 371 49.9
BcaB03g14555 Brassica carinata HOM05D005050 ORTHO05D006198 9.0e-70 268.5 282 59.9
BolC5t30067H Brassica oleracea HOM05D005050 ORTHO05D006198 2.7e-66 256.9 273 60.4
BolC8t52057H Brassica oleracea HOM05D005050 ORTHO05D006198 4.6e-66 256.1 271 62.4
BraA06t24298Z Brassica rapa HOM05D005050 ORTHO05D006198 1.3e-65 254.6 271 62.0
Oeu026061.1 Olea europaea HOM05D005050 ORTHO05D006198 2.5e-64 250.4 210 66.2
Mapoly0066s0029 Marchantia polymorpha HOM05D005050 ORTHO05D006198 3.7e-63 246.5 390 45.6
AUR62018227 Chenopodium quinoa HOM05D005050 ORTHO05D006198 2.1e-58 230.7 344 46.8
Pp3c14_12690 Physcomitrium patens HOM05D005050 ORTHO05D006198 2.5e-56 223.8 400 44.5
Pp3c17_13310 Physcomitrium patens HOM05D005050 ORTHO05D006198 4.8e-55 219.5 393 43.5
Zm00001eb054200 Zea mays HOM05D005050 ORTHO05D006198 1.4e-54 218.0 266 54.5
BraA09t41526Z Brassica rapa HOM05D005050 ORTHO05D006198 9.0e-54 215.3 231 55.8
CANSAT25G2757 Cannabis sativa HOM05D005050 ORTHO05D006198 3.8e-52 209.9 191 62.3
Os03g0701900 Oryza sativa ssp. japonica HOM05D005050 ORTHO05D006198 1.9e-51 207.6 265 51.7
CANSAT35G1170 Cannabis sativa HOM05D005050 ORTHO05D006198 7.2e-51 205.7 136 78.7
CANSAT56G3350 Cannabis sativa HOM05D005050 ORTHO05D006198 2.7e-50 203.8 135 79.3
Haze_01617 Corylus avellana HOM05D005050 ORTHO05D006198 1.8e-46 191.0 198 60.1
BcaB03g14557 Brassica carinata HOM05D005050 ORTHO05D006198 1.3e-44 184.9 161 65.8
Oeu026060.1 Olea europaea HOM05D005050 ORTHO05D006198 1.4e-43 181.4 185 61.6
SMO116G0236 Selaginella moellendorffii HOM05D005050 ORTHO05D006198 3.2e-43 180.3 350 40.9
CBR_g5711 Chara braunii HOM05D005050 ORTHO05D006198 2.6e-37 160.6 475 32.2
CARHR015710 Cardamine hirsuta HOM05D005050 ORTHO05D006198 5.5e-35 152.9 103 76.7
BcaB03g14552 Brassica carinata HOM05D005050 ORTHO05D006198 7.4e-32 142.5 107 69.2
Haze_01615 Corylus avellana HOM05D005050 ORTHO05D006198 1.5e-24 118.2 73 83.6
unitig_27.g24936 Utricularia gibba HOM05D000188 ORTHO05D005820 1.8e-22 111.3 93 60.2
BcaNung06586 Brassica carinata HOM05D005050 ORTHO05D006198 3.8e-20 103.6 130 50.8
Sabra03G0013800 Salix brachista HOM05D005050 ORTHO05D006198 9.1e-14 82.4 231 35.5
Actinidia00225 Actinidia chinensis HOM05D000304 ORTHO05D000185 1.6e-10 71.6 131 38.9
Zm00001eb142240 Zea mays HOM05D000061 ORTHO05D000050 8.9e-09 65.9 37 81.1
Cre09.g387300 Chlamydomonas reinhardtii HOM05D005050 ORTHO05D006198 4.4e-08 63.5 108 38.9
Zm00001eb244490 Zea mays HOM05D001326 ORTHO05D002471 3.7e-07 60.5 33 81.8
SEGI_11287 Sequoiadendron giganteum HOM05D003482 ORTHO05D004194 8.3e-07 59.3 82 42.7


User provided reference genes

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