Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.15G041300 Glycine max HOM05D004321 ORTHO05D004889 6.8e-26 119.8 56 100.0
Lj3g0011964 Lotus japonicus HOM05D004321 ORTHO05D004889 8.3e-24 112.8 56 91.1
Glyma.11G143200 Glycine max HOM05D004321 ORTHO05D004889 4.1e-23 110.5 56 89.3
Glyma.12G066300 Glycine max HOM05D004321 ORTHO05D004889 9.2e-23 109.4 56 87.5
Phvul.L002443 Phaseolus vulgaris HOM05D004321 ORTHO05D004889 9.2e-23 109.4 56 87.5
Psat0s128g0040 Pisum sativum HOM05D004321 ORTHO05D004889 1.6e-22 108.6 56 85.7
Ca_19194_v3 Cicer arietinum L. HOM05D004321 ORTHO05D004889 2.0e-22 108.2 56 85.7
Phvul.011G067300 Phaseolus vulgaris HOM05D004321 ORTHO05D004889 3.5e-22 107.5 56 83.9
Ca_01346_v3 Cicer arietinum L. HOM05D004321 ORTHO05D004889 5.9e-22 106.7 56 83.9
Lalb_Chr14g0374991 Lupinus albus HOM05D004321 ORTHO05D004889 1.0e-21 105.9 56 83.9
FvH4_3g35530 Fragaria vesca HOM05D004321 ORTHO05D004889 1.3e-21 105.5 55 83.6
FAN11G1758 Fragaria x ananassa HOM05D004321 ORTHO05D004889 1.3e-21 105.5 55 83.6
Lalb_Chr03g0026871 Lupinus albus HOM05D004321 ORTHO05D004889 1.3e-21 105.5 56 82.1
Medtr2g096370 Medicago truncatula HOM05D004321 ORTHO05D004889 1.7e-21 105.1 56 83.9
Psat7g219560 Pisum sativum HOM05D004321 ORTHO05D004889 1.7e-21 105.1 54 85.2
Prupe.6G081200 Prunus persica HOM05D004321 ORTHO05D004889 1.7e-21 105.1 56 83.9
Atru.chr12.498 Acer truncatum HOM05D004321 ORTHO05D004889 2.3e-21 104.8 56 82.1
CSS0047088 Camellia sinensis var. sinensis HOM05D004321 ORTHO05D004889 2.3e-21 104.8 56 83.9
FAN21G2447 Fragaria x ananassa HOM05D004321 ORTHO05D004889 2.3e-21 104.8 55 81.8
MD01G1124900 Malus domestica HOM05D004321 ORTHO05D004889 2.3e-21 104.8 55 83.6
Prupe.2G232300 Prunus persica HOM05D004321 ORTHO05D004889 2.3e-21 104.8 55 83.6
Ca_31212_v3 Cicer arietinum L. HOM05D004321 ORTHO05D004889 2.9e-21 104.4 54 83.3
Hma1.2p1_0624F.1_g191410 Hydrangea macrophylla HOM05D004321 ORTHO05D004889 2.9e-21 104.4 55 81.8
Hma1.2p1_1736F.1_g299920 Hydrangea macrophylla HOM05D004321 ORTHO05D004889 2.9e-21 104.4 55 81.8
MD03G1096900 Malus domestica HOM05D004321 ORTHO05D004889 2.9e-21 104.4 56 82.1
Medtr4g063080 Medicago truncatula HOM05D004321 ORTHO05D004889 2.9e-21 104.4 56 82.1
Atru.chr8.1939 Acer truncatum HOM05D004321 ORTHO05D004889 3.9e-21 104.0 56 80.4
Ciclev10013313m.g Citrus clementina HOM05D004321 ORTHO05D004889 5.0e-21 103.6 56 82.1
FAN16G3546 Fragaria x ananassa HOM05D004321 ORTHO05D004889 5.0e-21 103.6 54 83.3
Lalb_Chr01g0003821 Lupinus albus HOM05D004321 ORTHO05D004889 6.6e-21 103.2 56 78.6
EL10Ac7g15980 Beta vulgaris HOM05D004321 ORTHO05D004889 8.6e-21 102.8 53 81.1
CANSAT54G0658 Cannabis sativa HOM05D004321 ORTHO05D004889 1.1e-20 102.4 56 78.6
DCAR_027656 Daucus carota HOM05D004321 ORTHO05D004889 1.1e-20 102.4 56 80.4
vmacro20132 Vaccinium macrocarpon HOM05D004321 ORTHO05D004889 1.1e-20 102.4 56 80.4
AL5G25260 Arabidopsis lyrata HOM05D004321 ORTHO05D004889 1.5e-20 102.1 56 80.4
AL8G36130 Arabidopsis lyrata HOM05D004321 ORTHO05D004889 1.5e-20 102.1 56 80.4
AT3G46430 Arabidopsis thaliana HOM05D004321 ORTHO05D004889 1.5e-20 102.1 56 80.4
AT5G59613 Arabidopsis thaliana HOM05D004321 ORTHO05D004889 1.5e-20 102.1 56 80.4
CSS0020614 Camellia sinensis var. sinensis HOM05D004321 ORTHO05D004889 1.5e-20 102.1 56 80.4
CSS0036330 Camellia sinensis var. sinensis HOM05D004321 ORTHO05D004889 1.5e-20 102.1 56 80.4
CiPaw.13G097400 Carya illinoinensis HOM05D004321 ORTHO05D004889 1.5e-20 102.1 56 82.1
CiPaw.14G070600 Carya illinoinensis HOM05D004321 ORTHO05D004889 1.5e-20 102.1 56 82.1
ClCG04G008340 Citrullus lanatus HOM05D004321 ORTHO05D004889 1.5e-20 102.1 56 80.4
Ciclev10033281m.g Citrus clementina HOM05D004321 ORTHO05D004889 1.5e-20 102.1 56 78.6
DCAR_015188 Daucus carota HOM05D004321 ORTHO05D004889 1.5e-20 102.1 55 80.0
Thhalv10015813m.g Eutrema salsugineum HOM05D004321 ORTHO05D004889 1.5e-20 102.1 56 80.4
FAN25G0680 Fragaria x ananassa HOM05D004321 ORTHO05D004889 1.5e-20 102.1 54 81.5
TAR369G0439 Trochodendron aralioides HOM05D004321 ORTHO05D004889 1.5e-20 102.1 56 80.4
TAR636G2028 Trochodendron aralioides HOM05D004321 ORTHO05D004889 1.5e-20 102.1 56 82.1
Aa31LG4G15480 Aethionema arabicum HOM05D004321 ORTHO05D004889 1.9e-20 101.7 56 80.4
BcaB01g04562 Brassica carinata HOM05D004321 ORTHO05D004889 1.9e-20 101.7 56 78.6
A02p07010 Brassica napus HOM05D004321 ORTHO05D004889 1.9e-20 101.7 56 78.6
BraA02t05781Z Brassica rapa HOM05D004321 ORTHO05D004889 1.9e-20 101.7 56 78.6
RcHm_v2.0_Chr5g0063751 Rosa chinensis HOM05D004321 ORTHO05D004889 1.9e-20 101.7 56 80.4
CARHR273120 Cardamine hirsuta HOM05D004321 ORTHO05D004889 2.5e-20 101.3 56 78.6
Hund04987 Selenicereus undatus HOM05D004321 ORTHO05D004889 2.5e-20 101.3 54 81.5
Solyc06g060080.2 Solanum lycopersicum HOM05D004321 ORTHO05D004889 3.3e-20 100.9 56 75.0
TAR633G0306 Trochodendron aralioides HOM05D004321 ORTHO05D004889 3.3e-20 100.9 54 83.3
BcaC01g06508 Brassica carinata HOM05D004321 ORTHO05D004889 4.3e-20 100.5 56 78.6
BcaC03g13996 Brassica carinata HOM05D004321 ORTHO05D004889 4.3e-20 100.5 56 78.6
A03p11570 Brassica napus HOM05D004321 ORTHO05D004889 4.3e-20 100.5 56 78.6
A10p16870 Brassica napus HOM05D004321 ORTHO05D004889 4.3e-20 100.5 56 78.6
C02p12350 Brassica napus HOM05D004321 ORTHO05D004889 4.3e-20 100.5 56 78.6
C03p13450 Brassica napus HOM05D004321 ORTHO05D004889 4.3e-20 100.5 56 78.6
BolC2t07335H Brassica oleracea HOM05D004321 ORTHO05D004889 4.3e-20 100.5 56 78.6
BolC3t13802H Brassica oleracea HOM05D004321 ORTHO05D004889 4.3e-20 100.5 56 78.6
BraA03t10470Z Brassica rapa HOM05D004321 ORTHO05D004889 4.3e-20 100.5 56 78.6
BraA10t43766Z Brassica rapa HOM05D004321 ORTHO05D004889 4.3e-20 100.5 56 78.6
Carub.0005s1223 Capsella rubella HOM05D004321 ORTHO05D004889 4.3e-20 100.5 56 78.6
Carub.0008s2029 Capsella rubella HOM05D004321 ORTHO05D004889 4.3e-20 100.5 56 78.6
CAN.G531.3 Capsicum annuum HOM05D004321 ORTHO05D004889 4.3e-20 100.5 56 73.2
CARHR154850 Cardamine hirsuta HOM05D004321 ORTHO05D004889 4.3e-20 100.5 56 78.6
PGR142G1540 Punica granatum HOM05D004321 ORTHO05D004889 4.3e-20 100.5 55 80.0
Sp5g15250 Schrenkiella parvula HOM05D004321 ORTHO05D004889 4.3e-20 100.5 56 78.6
Sp6g21320 Schrenkiella parvula HOM05D004321 ORTHO05D004889 4.3e-20 100.5 56 78.6
Migut.D00865 Erythranthe guttata HOM05D004321 ORTHO05D004889 5.6e-20 100.1 54 77.8
Migut.H00021 Erythranthe guttata HOM05D004321 ORTHO05D004889 5.6e-20 100.1 53 79.2
Lsat_1_v5_gn_5_168880 Lactuca sativa HOM05D004321 ORTHO05D004889 5.6e-20 100.1 55 81.8
Nn2g12809 Nelumbo nucifera HOM05D004321 ORTHO05D004889 5.6e-20 100.1 56 78.6
Potri.010G207600 Populus trichocarpa HOM05D004321 ORTHO05D004889 5.6e-20 100.1 55 80.0
Ah.15g096870 Amaranthus hybridus HOM05D004321 ORTHO05D004889 7.3e-20 99.8 54 81.5
Ah.15g096900 Amaranthus hybridus HOM05D004321 ORTHO05D004889 7.3e-20 99.8 54 81.5
Thhalv10003016m.g Eutrema salsugineum HOM05D004321 ORTHO05D004889 7.3e-20 99.8 56 78.6
PSO339G6107 Papaver somniferum HOM05D004321 ORTHO05D004889 7.3e-20 99.8 53 79.2
Potri.008G053000 Populus trichocarpa HOM05D004321 ORTHO05D004889 7.3e-20 99.8 55 80.0
PGSC0003DMG400011781 Solanum tuberosum HOM05D004321 ORTHO05D004889 7.3e-20 99.8 56 73.2
TWI75G1213 Tripterygium wilfordii HOM05D004321 ORTHO05D004889 7.3e-20 99.8 56 78.6
BcaB08g36233 Brassica carinata HOM05D004321 ORTHO05D004889 9.5e-20 99.4 56 76.8
CAN.G526.11 Capsicum annuum HOM05D004321 ORTHO05D004889 9.5e-20 99.4 56 73.2
COL.COLO4_18474 Corchorus olitorius HOM05D004321 ORTHO05D004889 9.5e-20 99.4 55 81.8
Hund04986 Selenicereus undatus HOM05D004321 ORTHO05D004889 9.5e-20 99.4 54 79.6
BcaB08g36235 Brassica carinata HOM05D004321 ORTHO05D004889 1.2e-19 99.0 56 76.8
BcaC04g19749 Brassica carinata HOM05D004321 ORTHO05D004889 1.2e-19 99.0 56 76.8
C09p52020 Brassica napus HOM05D004321 ORTHO05D004889 1.2e-19 99.0 56 76.8
BolC9t58064H Brassica oleracea HOM05D004321 ORTHO05D004889 1.2e-19 99.0 56 76.8
QL01p032862 Quercus lobata HOM05D004321 ORTHO05D004889 1.2e-19 99.0 55 78.2
Sed0004580 Sechium edule HOM05D004321 ORTHO05D004889 1.2e-19 99.0 56 76.8
SGA_v2.0_scaffold104G30152 Striga asiatica HOM05D004321 ORTHO05D004889 1.2e-19 99.0 54 77.8
Thecc.09G325400 Theobroma cacao HOM05D004321 ORTHO05D004889 1.2e-19 99.0 55 81.8
CsaV3_4G024800 Cucumis sativus L. HOM05D004321 ORTHO05D004889 2.1e-19 98.2 55 76.4
Nitab4.5_0003240g0020 Nicotiana tabacum HOM05D004321 ORTHO05D004889 2.8e-19 97.8 56 75.0
Solyc11g005050.2 Solanum lycopersicum HOM05D004321 ORTHO05D004889 2.8e-19 97.8 56 73.2
THA.LOC109116048 Tarenaya hassleriana HOM05D004321 ORTHO05D004889 2.8e-19 97.8 55 74.5
HPP92_018999 Vanilla planifolia HOM05D004321 ORTHO05D004889 2.8e-19 97.8 55 74.5
MSTRG.15649 Avicennia marina HOM05D004321 ORTHO05D004889 3.6e-19 97.4 54 79.6
Nitab4.5_0000322g0010 Nicotiana tabacum HOM05D004321 ORTHO05D004889 3.6e-19 97.4 54 75.9
Oeu031979.1 Olea europaea HOM05D004321 ORTHO05D004889 3.6e-19 97.4 56 76.8
Sed0023983 Sechium edule HOM05D004321 ORTHO05D004889 3.6e-19 97.4 55 74.5
PGSC0003DMG402006052 Solanum tuberosum HOM05D004321 ORTHO05D004889 3.6e-19 97.4 56 73.2
MELO3C003114.2 Cucumis melo HOM05D004321 ORTHO05D004889 4.7e-19 97.1 55 76.4
arahy.Tifrunner.gnm1.ann1.CZHF5K Arachis hypogaea HOM05D004321 ORTHO05D004889 6.1e-19 96.7 55 76.4
Cc02_g08100 Coffea canephora HOM05D004321 ORTHO05D004889 6.1e-19 96.7 55 74.5
Manes.04G032700 Manihot esculenta HOM05D004321 ORTHO05D004889 6.1e-19 96.7 55 78.2
SalBow1G1058 Salvia bowleyana HOM05D004321 ORTHO05D004889 6.1e-19 96.7 55 72.7
SalBow1G8509 Salvia bowleyana HOM05D004321 ORTHO05D004889 6.1e-19 96.7 55 72.7
Cc01_g12570 Coffea canephora HOM05D004321 ORTHO05D004889 8.0e-19 96.3 54 74.1
Nitab4.5_0001168g0080 Nicotiana tabacum HOM05D004321 ORTHO05D004889 8.0e-19 96.3 56 73.2
Nitab4.5_0002045g0030 Nicotiana tabacum HOM05D004321 ORTHO05D004889 8.0e-19 96.3 56 73.2
THA.LOC104814874 Tarenaya hassleriana HOM05D004321 ORTHO05D004889 8.0e-19 96.3 54 74.1
ATR0582G115 Amborella trichopoda HOM05D004321 ORTHO05D004889 1.0e-18 95.9 54 74.1
Manes.11G132700 Manihot esculenta HOM05D004321 ORTHO05D004889 1.0e-18 95.9 55 78.2
HanXRQChr05g0132661 Helianthus annuus HOM05D004321 ORTHO05D004889 1.8e-18 95.1 56 76.8
unitig_37.g12533 Utricularia gibba HOM05D000061 ORTHO05D003487 1.8e-18 95.1 53 73.6
arahy.Tifrunner.gnm1.ann1.NFV9ZK Arachis hypogaea HOM05D004321 ORTHO05D004889 2.3e-18 94.7 54 75.9
Gohir.A05G097300 Gossypium hirsutum HOM05D004321 ORTHO05D004889 2.3e-18 94.7 55 76.4
Gohir.A05G097400 Gossypium hirsutum HOM05D004321 ORTHO05D004889 2.3e-18 94.7 55 76.4
Gohir.D03G128000 Gossypium hirsutum HOM05D004321 ORTHO05D004889 2.3e-18 94.7 55 76.4
Gohir.D05G097400 Gossypium hirsutum HOM05D004321 ORTHO05D004889 2.3e-18 94.7 55 76.4
Gohir.D05G097500 Gossypium hirsutum HOM05D004321 ORTHO05D004889 2.3e-18 94.7 55 76.4
Gorai.003G134700 Gossypium raimondii HOM05D004321 ORTHO05D004889 2.3e-18 94.7 55 76.4
Gorai.009G101100 Gossypium raimondii HOM05D004321 ORTHO05D004889 2.3e-18 94.7 55 76.4
Oeu033243.1 Olea europaea HOM05D004321 ORTHO05D004889 2.3e-18 94.7 56 76.8
CAN.G711.6 Capsicum annuum HOM05D004321 ORTHO05D004889 5.2e-18 93.6 56 67.9
Gohir.A03G040001 Gossypium hirsutum HOM05D004321 ORTHO05D004889 5.2e-18 93.6 55 74.5
Gorai.009G101000 Gossypium raimondii HOM05D004321 ORTHO05D004889 6.8e-18 93.2 55 74.5
Zm00001eb355680 Zea mays HOM05D004321 ORTHO05D004889 6.8e-18 93.2 55 69.1
Cpa.g.sc190.10 Carica papaya HOM05D004321 ORTHO05D004889 1.2e-17 92.4 55 72.7
HanXRQChr02g0044521 Helianthus annuus HOM05D004321 ORTHO05D004889 1.2e-17 92.4 54 75.9
Os03g0606200 Oryza sativa ssp. japonica HOM05D004321 ORTHO05D004889 2.0e-17 91.7 52 71.2
HanXRQChr05g0143771 Helianthus annuus HOM05D004321 ORTHO05D004889 2.6e-17 91.3 54 75.9
Glyma.13G333000 Glycine max HOM05D004321 ORTHO05D004889 4.4e-17 90.5 40 97.5
Aqoxy2G02059 Aquilegia oxysepala HOM05D004321 ORTHO05D004889 1.3e-16 89.0 53 71.7
Peaxi162Scf01003g00014 Petunia axillaris HOM05D004321 ORTHO05D004889 1.1e-15 85.9 55 65.5
MD11G1143400 Malus domestica HOM05D004321 ORTHO05D004889 9.2e-15 82.8 40 85.0
Lalb_Chr24g0394261 Lupinus albus HOM05D004321 ORTHO05D004889 1.6e-14 82.0 40 85.0
Sc12g0001610 Simmondsia chinensis HOM05D004321 ORTHO05D004889 1.6e-14 82.0 39 89.7
SGA_v2.0_scaffold199G41163 Striga asiatica HOM05D004321 ORTHO05D004889 3.5e-14 80.9 40 82.5
Aa31sc23G280 Aethionema arabicum HOM05D004321 ORTHO05D004889 1.3e-13 79.0 40 82.5
Haze_24057 Corylus avellana HOM05D004321 ORTHO05D004889 1.7e-13 78.6 40 82.5
MBI14_g11678_MAGBIO Magnolia biondii HOM05D004321 ORTHO05D004889 5.0e-13 77.0 40 75.0
VMungo0720G0686 Vigna mungo HOM05D004321 ORTHO05D004889 6.6e-13 76.6 40 80.0
Sabra08G0038100 Salix brachista HOM05D004321 ORTHO05D004889 2.5e-12 74.7 40 80.0
Zm00001eb022520 Zea mays HOM05D003081 ORTHO05D004889 3.3e-12 74.3 48 64.6
CSS0040757 Camellia sinensis var. sinensis HOM05D004321 ORTHO05D004889 5.6e-12 73.6 54 59.3
Zm00001eb120950 Zea mays HOM05D004321 ORTHO05D004889 9.5e-12 72.8 47 63.8
RcHm_v2.0_Chr1g0360701 Rosa chinensis HOM05D004321 ORTHO05D004889 2.8e-11 71.2 40 75.0
RcHm_v2.0_Chr7g0223231 Rosa chinensis HOM05D004321 ORTHO05D004889 3.6e-11 70.9 40 75.0
HanXRQChr05g0129691 Helianthus annuus HOM05D004321 ORTHO05D004889 6.2e-11 70.1 34 85.3
CSS0037228 Camellia sinensis var. sinensis HOM05D004321 ORTHO05D004889 2.3e-10 68.2 52 61.5
RcHm_v2.0_Chr1g0340881 Rosa chinensis HOM05D004321 ORTHO05D004889 8.9e-10 66.2 40 75.0
RcHm_v2.0_Chr1g0367621 Rosa chinensis HOM05D004321 ORTHO05D004889 8.9e-10 66.2 40 75.0
RcHm_v2.0_Chr6g0265721 Rosa chinensis HOM05D004321 ORTHO05D004889 8.9e-10 66.2 40 75.0
CSS0027128 Camellia sinensis var. sinensis HOM05D004321 ORTHO05D004889 1.5e-09 65.5 39 69.2
RcHm_v2.0_Chr3g0463581 Rosa chinensis HOM05D004321 ORTHO05D004889 4.4e-09 63.9 40 72.5
RcHm_v2.0_Chr2g0162431 Rosa chinensis HOM05D004321 ORTHO05D004889 9.8e-09 62.8 40 72.5
Sc21g0005590 Simmondsia chinensis HOM05D000500 ORTHO05D000367 1.2e-06 55.8 55 45.5
RcHm_v2.0_Chr7g0198591 Rosa chinensis HOM05D004321 ORTHO05D004889 1.6e-06 55.5 29 79.3
Pp3c12_2550 Physcomitrium patens HOM05D041854 ORTHO05D023521 4.6e-06 53.9 40 60.0


User provided reference genes

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