Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.15G034700 Glycine max HOM05D004551 ORTHO05D005262 6.4e-44 180.3 85 100.0
Glyma.02G308400 Glycine max HOM05D004551 ORTHO05D005262 5.4e-43 177.2 85 97.6
Glyma.13G339700 Glycine max HOM05D004551 ORTHO05D005262 1.3e-41 172.6 85 95.3
Phvul.008G288300 Phaseolus vulgaris HOM05D004551 ORTHO05D005262 3.9e-41 171.0 85 92.9
Glyma.14G004700 Glycine max HOM05D004551 ORTHO05D005262 6.6e-41 170.2 85 92.9
Lj4g0001727 Lotus japonicus HOM05D004551 ORTHO05D005262 4.8e-39 164.1 79 96.2
Ca_01298_v3 Cicer arietinum L. HOM05D004551 ORTHO05D005262 6.2e-39 163.7 86 90.7
Lj3g0011983 Lotus japonicus HOM05D004551 ORTHO05D005262 1.1e-38 162.9 79 94.9
Psat5g285840 Pisum sativum HOM05D004551 ORTHO05D005262 1.4e-38 162.5 81 90.1
Lalb_Chr24g0397121 Lupinus albus HOM05D004551 ORTHO05D005262 1.8e-38 162.2 85 87.1
Dinv35533 Davidia involucrata HOM05D004551 ORTHO05D005262 5.3e-38 160.6 85 85.9
arahy.Tifrunner.gnm1.ann1.CMV3ZL Arachis hypogaea HOM05D004551 ORTHO05D005262 1.5e-37 159.1 94 80.9
Hma1.2p1_1521F.1_g288710 Hydrangea macrophylla HOM05D004551 ORTHO05D005262 5.8e-37 157.1 85 84.7
arahy.Tifrunner.gnm1.ann1.S44GTI Arachis hypogaea HOM05D004551 ORTHO05D005262 1.7e-36 155.6 94 78.7
Prupe.6G065200 Prunus persica HOM05D004551 ORTHO05D005262 2.9e-36 154.8 84 82.1
HanXRQChr08g0237601 Helianthus annuus HOM05D004551 ORTHO05D005262 3.8e-36 154.5 84 84.5
Oeu036200.1 Olea europaea HOM05D004551 ORTHO05D005262 6.4e-36 153.7 85 81.2
CSS0032515 Camellia sinensis var. sinensis HOM05D004551 ORTHO05D005262 1.1e-35 152.9 85 80.0
HanXRQChr02g0055991 Helianthus annuus HOM05D004551 ORTHO05D005262 1.1e-35 152.9 84 83.3
HanXRQChr09g0243371 Helianthus annuus HOM05D004551 ORTHO05D005262 1.4e-35 152.5 84 83.3
HanXRQChr09g0243381 Helianthus annuus HOM05D004551 ORTHO05D005262 1.4e-35 152.5 84 83.3
Medtr2g097870 Medicago truncatula HOM05D004551 ORTHO05D005262 1.4e-35 152.5 79 86.1
TPR.G6876 Trifolium pratense HOM05D004551 ORTHO05D005262 2.4e-35 151.8 83 80.7
Lsat_1_v5_gn_9_25241 Lactuca sativa HOM05D004551 ORTHO05D005262 3.2e-35 151.4 84 83.3
Oeu017418.1 Olea europaea HOM05D004551 ORTHO05D005262 7.1e-35 150.2 84 81.0
FvH4_3g37430 Fragaria vesca HOM05D004551 ORTHO05D005262 1.2e-34 149.4 80 82.5
FAN11G1128 Fragaria x ananassa HOM05D004551 ORTHO05D005262 1.2e-34 149.4 80 82.5
FAN16G1443 Fragaria x ananassa HOM05D004551 ORTHO05D005262 2.7e-34 148.3 80 82.5
FAN25G2220 Fragaria x ananassa HOM05D004551 ORTHO05D005262 2.7e-34 148.3 80 82.5
MBI05_g10286_MAGBIO Magnolia biondii HOM05D004551 ORTHO05D005262 2.7e-34 148.3 85 78.8
FAN16G2867 Fragaria x ananassa HOM05D004551 ORTHO05D005262 3.5e-34 147.9 79 82.3
Cc06_g01910 Coffea canephora HOM05D004551 ORTHO05D005262 6.0e-34 147.1 85 80.0
Rhsim04G0164100 Rhododendron simsii HOM05D004551 ORTHO05D005262 1.3e-33 146.0 85 76.5
Migut.J00249 Erythranthe guttata HOM05D004551 ORTHO05D005262 3.9e-33 144.4 84 75.0
CDE02G0008 Ceratophyllum demersum HOM05D004551 ORTHO05D005262 8.7e-33 143.3 85 74.1
unitig_578.g15888 Utricularia gibba HOM05D004551 ORTHO05D005262 8.7e-33 143.3 80 76.2
SalBow1G6960 Salvia bowleyana HOM05D004551 ORTHO05D005262 1.5e-32 142.5 85 72.9
THA.LOC104800711 Tarenaya hassleriana HOM05D004551 ORTHO05D005262 1.5e-32 142.5 85 75.3
Aa31LG5G6930 Aethionema arabicum HOM05D004551 ORTHO05D005262 1.9e-32 142.1 85 75.3
ClCG03G001090 Citrullus lanatus HOM05D004551 ORTHO05D005262 2.5e-32 141.7 86 81.4
MELO3C020586.2 Cucumis melo HOM05D004551 ORTHO05D005262 2.5e-32 141.7 86 81.4
CsaV3_1G035840 Cucumis sativus L. HOM05D004551 ORTHO05D005262 2.5e-32 141.7 86 81.4
Migut.L01982 Erythranthe guttata HOM05D004551 ORTHO05D005262 2.5e-32 141.7 80 76.2
CiPaw.13G084300 Carya illinoinensis HOM05D004551 ORTHO05D005262 5.6e-32 140.6 84 78.6
PSO339G1751 Papaver somniferum HOM05D004551 ORTHO05D005262 5.6e-32 140.6 84 72.6
PSO384G2886 Papaver somniferum HOM05D004551 ORTHO05D005262 5.6e-32 140.6 84 72.6
vmacro08615 Vaccinium macrocarpon HOM05D004551 ORTHO05D005262 5.6e-32 140.6 77 80.5
FAN21G1099 Fragaria x ananassa HOM05D004551 ORTHO05D005262 9.6e-32 139.8 73 84.9
Gohir.A05G091300 Gossypium hirsutum HOM05D004551 ORTHO05D005262 9.6e-32 139.8 86 74.4
Gohir.D05G092200 Gossypium hirsutum HOM05D004551 ORTHO05D005262 9.6e-32 139.8 86 74.4
Nitab4.5_0002152g0070 Nicotiana tabacum HOM05D004551 ORTHO05D005262 9.6e-32 139.8 77 77.9
Lalb_Chr22g0352421 Lupinus albus HOM05D004551 ORTHO05D005262 1.3e-31 139.4 68 91.2
Gohir.A03G047200 Gossypium hirsutum HOM05D004551 ORTHO05D005262 1.6e-31 139.0 86 74.4
Gorai.003G126500 Gossypium raimondii HOM05D004551 ORTHO05D005262 1.6e-31 139.0 86 74.4
GSVIVG01024832001 Vitis vinifera HOM05D004551 ORTHO05D005262 2.1e-31 138.7 85 76.5
Glyma.15G229800 Glycine max HOM05D004551 ORTHO05D005262 2.8e-31 138.3 68 92.6
Gorai.009G094700 Gossypium raimondii HOM05D004551 ORTHO05D005262 2.8e-31 138.3 86 73.3
CDE04G2361 Ceratophyllum demersum HOM05D004551 ORTHO05D005262 3.7e-31 137.9 75 78.7
Duzib168G2386 Durio zibethinus HOM05D004551 ORTHO05D005262 3.7e-31 137.9 80 76.2
MD11G1085200 Malus domestica HOM05D004551 ORTHO05D005262 4.8e-31 137.5 84 75.0
Sed0000742 Sechium edule HOM05D004551 ORTHO05D005262 4.8e-31 137.5 86 77.9
CANSAT54G1854 Cannabis sativa HOM05D004551 ORTHO05D005262 1.1e-30 136.3 85 74.1
TWI75G0664 Tripterygium wilfordii HOM05D004551 ORTHO05D005262 1.1e-30 136.3 84 72.6
Ciclev10029702m.g Citrus clementina HOM05D004551 ORTHO05D005262 1.4e-30 136.0 86 75.6
Peaxi162Scf01302g00041 Petunia axillaris HOM05D004551 ORTHO05D005262 1.4e-30 136.0 77 75.3
PGSC0003DMG402020339 Solanum tuberosum HOM05D004551 ORTHO05D005262 1.4e-30 136.0 76 77.6
Thecc.09G309400 Theobroma cacao HOM05D004551 ORTHO05D005262 1.4e-30 136.0 86 74.4
EL10Ac7g16095 Beta vulgaris HOM05D004551 ORTHO05D005262 1.8e-30 135.6 85 74.1
CiPaw.14G063000 Carya illinoinensis HOM05D004551 ORTHO05D005262 2.4e-30 135.2 84 76.2
QL01p028907 Quercus lobata HOM05D004551 ORTHO05D005262 2.4e-30 135.2 79 77.2
Zm00001eb211450 Zea mays HOM05D004551 ORTHO05D005262 2.4e-30 135.2 85 71.8
Solyc09g011760.3 Solanum lycopersicum HOM05D004551 ORTHO05D005262 3.1e-30 134.8 76 76.3
Sopen09g006580 Solanum pennellii HOM05D004551 ORTHO05D005262 3.1e-30 134.8 76 76.3
Thhalv10017490m.g Eutrema salsugineum HOM05D004551 ORTHO05D005262 4.0e-30 134.4 84 71.4
Sp4g12260 Schrenkiella parvula HOM05D004551 ORTHO05D005262 4.0e-30 134.4 79 74.7
Nn2g13555 Nelumbo nucifera HOM05D004551 ORTHO05D005262 6.9e-30 133.7 85 72.9
Pp3c1_35930 Physcomitrium patens HOM05D004551 ORTHO05D005262 6.9e-30 133.7 84 66.7
unitig_8.g4441 Utricularia gibba HOM05D004551 ORTHO05D005262 6.9e-30 133.7 101 65.3
AL4G24240 Arabidopsis lyrata HOM05D004551 ORTHO05D005262 2.0e-29 132.1 79 73.4
AT2G29530 Arabidopsis thaliana HOM05D004551 ORTHO05D005262 2.0e-29 132.1 85 72.9
CARHR122870 Cardamine hirsuta HOM05D004551 ORTHO05D005262 2.0e-29 132.1 82 72.0
A04p22520 Brassica napus HOM05D004551 ORTHO05D005262 2.6e-29 131.7 82 70.7
CSS0004921 Camellia sinensis var. sinensis HOM05D004551 ORTHO05D005262 2.6e-29 131.7 84 73.8
Hund18875 Selenicereus undatus HOM05D004551 ORTHO05D005262 2.6e-29 131.7 85 70.6
Dinv34317 Davidia involucrata HOM05D004551 ORTHO05D005262 3.4e-29 131.3 84 72.6
COL.COLO4_19068 Corchorus olitorius HOM05D004551 ORTHO05D005262 4.5e-29 131.0 80 73.8
Hma1.2p1_0543F.1_g175360 Hydrangea macrophylla HOM05D004551 ORTHO05D005262 7.6e-29 130.2 84 72.6
Sopen06g001810 Solanum pennellii HOM05D004551 ORTHO05D005262 9.9e-29 129.8 85 70.6
A05p15870 Brassica napus HOM05D004551 ORTHO05D005262 2.2e-28 128.6 76 73.7
C04p21310 Brassica napus HOM05D004551 ORTHO05D005262 2.2e-28 128.6 76 73.7
Solyc06g005840.4 Solanum lycopersicum HOM05D004551 ORTHO05D005262 2.2e-28 128.6 85 70.6
PGSC0003DMG400020830 Solanum tuberosum HOM05D004551 ORTHO05D005262 2.2e-28 128.6 85 70.6
Os07g0243100 Oryza sativa ssp. japonica HOM05D004551 ORTHO05D005262 3.8e-28 127.9 74 75.7
Sc12g0001090 Simmondsia chinensis HOM05D004551 ORTHO05D005262 3.8e-28 127.9 85 71.8
Carub.0004s1058 Capsella rubella HOM05D004551 ORTHO05D005262 4.9e-28 127.5 79 70.9
BcaB02g10259 Brassica carinata HOM05D004551 ORTHO05D005262 8.4e-28 126.7 76 72.4
MD03G1080700 Malus domestica HOM05D004551 ORTHO05D005262 8.4e-28 126.7 63 85.7
RcHm_v2.0_Chr5g0067321 Rosa chinensis HOM05D004551 ORTHO05D005262 8.4e-28 126.7 85 69.4
AagrBONN_evm.TU.Sc2ySwM_117.3522 Anthoceros agrestis HOM05D004551 ORTHO05D005262 1.4e-27 125.9 76 68.4
Sed0006275 Sechium edule HOM05D004551 ORTHO05D005262 1.4e-27 125.9 74 77.0
Actinidia08554 Actinidia chinensis HOM05D004551 ORTHO05D005262 1.9e-27 125.6 84 70.2
BolC4t27387H Brassica oleracea HOM05D004551 ORTHO05D005262 1.9e-27 125.6 91 63.7
Haze_24227 Corylus avellana HOM05D004551 ORTHO05D005262 1.9e-27 125.6 67 82.1
Mapoly0052s0053 Marchantia polymorpha HOM05D004551 ORTHO05D005262 1.9e-27 125.6 72 72.2
Cc01_g13610 Coffea canephora HOM05D004551 ORTHO05D005262 3.2e-27 124.8 90 67.8
Nitab4.5_0002405g0130 Nicotiana tabacum HOM05D004551 ORTHO05D005262 3.2e-27 124.8 85 70.6
Potri.009G039600 Populus trichocarpa HOM05D004551 ORTHO05D005262 3.2e-27 124.8 85 64.7
Dinv17073 Davidia involucrata HOM05D004551 ORTHO05D005262 4.2e-27 124.4 70 81.4
Dinv43017 Davidia involucrata HOM05D004551 ORTHO05D005262 4.2e-27 124.4 70 81.4
C04p58670 Brassica napus HOM05D004551 ORTHO05D005262 1.2e-26 122.9 94 61.7
HPP92_018167 Vanilla planifolia HOM05D004551 ORTHO05D005262 1.6e-26 122.5 67 82.1
Aqoxy1G00774 Aquilegia oxysepala HOM05D004551 ORTHO05D005262 2.7e-26 121.7 77 71.4
vmacro03012 Vaccinium macrocarpon HOM05D004551 ORTHO05D005262 2.7e-26 121.7 68 76.5
Potri.001G246500 Populus trichocarpa HOM05D004551 ORTHO05D005262 3.5e-26 121.3 85 62.4
Duzib150G1644 Durio zibethinus HOM05D004551 ORTHO05D005262 4.6e-26 120.9 86 66.3
Phvul.L008843 Phaseolus vulgaris HOM05D004551 ORTHO05D005262 1.0e-25 119.8 85 71.8
CAN.G978.3 Capsicum annuum HOM05D004551 ORTHO05D005262 1.3e-25 119.4 65 76.9
Eucgr.B02289 Eucalyptus grandis HOM05D004551 ORTHO05D005262 1.3e-25 119.4 84 67.9
Ah.15g090420 Amaranthus hybridus HOM05D004551 ORTHO05D005262 1.8e-25 119.0 76 65.8
Duzib170G1093 Durio zibethinus HOM05D004551 ORTHO05D005262 2.3e-25 118.6 86 65.1
Manes.02G124000 Manihot esculenta HOM05D004551 ORTHO05D005262 3.9e-25 117.9 86 64.0
Manes.01G166600 Manihot esculenta HOM05D004551 ORTHO05D005262 6.7e-25 117.1 86 64.0
Os03g0825400 Oryza sativa ssp. japonica HOM05D004551 ORTHO05D005262 6.7e-25 117.1 85 61.2
BraA04t17797Z Brassica rapa HOM05D004551 ORTHO05D005262 8.7e-25 116.7 115 53.0
SMO172G0051 Selaginella moellendorffii HOM05D004551 ORTHO05D005262 2.8e-23 111.7 72 69.4
AUR62020055 Chenopodium quinoa HOM05D004551 ORTHO05D005262 4.8e-23 110.9 67 76.1
BraA05t20500Z Brassica rapa HOM05D004551 ORTHO05D005262 1.1e-22 109.8 84 61.9
ECA236G0522 Erigeron canadensis HOM05D004551 ORTHO05D005262 1.4e-22 109.4 57 84.2
Nitab4.5_0000880g0120 Nicotiana tabacum HOM05D004551 ORTHO05D005262 1.4e-22 109.4 54 88.9
ECA247G0999 Erigeron canadensis HOM05D004551 ORTHO05D005262 1.8e-22 109.0 83 62.7
QL02p091823 Quercus lobata HOM05D000741 ORTHO05D000506 1.8e-22 109.0 53 86.8
PGR102G3288 Punica granatum HOM05D004551 ORTHO05D005262 2.4e-22 108.6 66 75.8
QL02p079044 Quercus lobata HOM05D004551 ORTHO05D005262 2.4e-22 108.6 52 88.5
Atru.chr3.4045 Acer truncatum HOM05D004551 ORTHO05D005262 5.3e-22 107.5 80 62.5
DCAR_005918 Daucus carota HOM05D004551 ORTHO05D005262 5.3e-22 107.5 98 57.1
Gohir.D03G120000 Gossypium hirsutum HOM05D004551 ORTHO05D005262 6.9e-22 107.1 86 64.0
VMungo0647G0519 Vigna mungo HOM05D000879 ORTHO05D002864 9.0e-22 106.7 52 88.5
Sabra16G0149600 Salix brachista HOM05D004551 ORTHO05D005262 1.2e-21 106.3 69 66.7
MCO07G332 Micromonas commoda HOM05D004551 ORTHO05D005262 4.5e-21 104.4 76 53.9
Zm00001eb063090 Zea mays HOM05D004551 ORTHO05D005262 5.8e-21 104.0 85 62.4
Ah.13g070320 Amaranthus hybridus HOM05D004551 ORTHO05D005262 1.3e-20 102.8 56 82.1
Oeu030799.1 Olea europaea HOM05D004551 ORTHO05D005262 2.9e-20 101.7 52 84.6
CBR_g3168 Chara braunii HOM05D004551 ORTHO05D005262 3.8e-20 101.3 69 56.5
HPP92_018179 Vanilla planifolia HOM05D004551 ORTHO05D005262 5.5e-19 97.4 52 84.6
BcaB06g28317 Brassica carinata HOM05D004551 ORTHO05D005262 1.2e-18 96.3 76 56.6
BolC4t23660H Brassica oleracea HOM05D004551 ORTHO05D005262 4.6e-18 94.4 53 73.6
AUR62001717 Chenopodium quinoa HOM05D004551 ORTHO05D005262 6.0e-18 94.0 100 51.0
Rhsim13G0075400 Rhododendron simsii HOM05D004551 ORTHO05D005262 3.9e-17 91.3 68 64.7
EL10Ac7g17098 Beta vulgaris HOM05D004551 ORTHO05D005262 5.1e-17 90.9 97 47.4
DCAR_007410 Daucus carota HOM05D004551 ORTHO05D005262 5.1e-17 90.9 72 62.5
Cre12.g514900 Chlamydomonas reinhardtii HOM05D004551 ORTHO05D005262 9.7e-16 86.7 64 56.2
TPR.G13621 Trifolium pratense HOM05D004551 ORTHO05D005262 1.4e-14 82.8 40 90.0
MD02G1203300 Malus domestica HOM05D004551 ORTHO05D005262 2.0e-13 79.0 51 70.6
MD02G1278800 Malus domestica HOM05D004551 ORTHO05D005262 2.2e-12 75.5 59 64.4
SGA_v2.0_scaffold75G24985 Striga asiatica HOM05D001002 ORTHO05D000802 3.8e-12 74.7 46 67.4
SHI22087 Sapria himalayana HOM05D004551 ORTHO05D005262 5.0e-12 74.3 59 52.5
PRCOL_00001542 Prasinoderma coloniale HOM05D002457 ORTHO05D005262 5.1e-09 64.3 63 46.0
Haze_27300 Corylus avellana HOM05D004551 ORTHO05D005262 2.5e-08 62.0 62 43.5
MELO3C035440.2 Cucumis melo HOM05D004551 ORTHO05D005262 1.4e-06 56.2 115 35.7
Cfa026385 Carpinus fangiana HOM05D004551 ORTHO05D005262 5.3e-06 54.3 59 40.7


User provided reference genes

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