Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.15G030700 Glycine max HOM05D005795 ORTHO05D007200 1.6e-170 602.8 347 100.0
Glyma.13G343600 Glycine max HOM05D005795 ORTHO05D007200 1.1e-153 547.0 363 85.1
VMungo1080G0355 Vigna mungo HOM05D005795 ORTHO05D007200 2.0e-144 516.2 343 86.3
Phvul.005G152400 Phaseolus vulgaris HOM05D005795 ORTHO05D007200 1.9e-134 483.0 349 82.2
arahy.Tifrunner.gnm1.ann1.LQCR4Y Arachis hypogaea HOM05D005795 ORTHO05D007200 3.9e-132 475.3 344 78.8
Lalb_Chr22g0352181 Lupinus albus HOM05D005795 ORTHO05D007200 1.5e-128 463.4 346 77.2
Medtr2g098650 Medicago truncatula HOM05D005795 ORTHO05D007200 5.5e-126 454.9 339 79.4
Lj3g0002937 Lotus japonicus HOM05D005795 ORTHO05D007200 5.2e-124 448.4 334 79.3
Ca_01264_v3 Cicer arietinum L. HOM05D005795 ORTHO05D007200 5.7e-123 444.9 342 77.5
TPR.G18871 Trifolium pratense HOM05D005795 ORTHO05D007200 1.6e-109 400.2 339 71.4
CiPaw.01G101200 Carya illinoinensis HOM05D005795 ORTHO05D007200 2.0e-107 393.3 330 68.5
Actinidia35971 Actinidia chinensis HOM05D005795 ORTHO05D007200 1.7e-106 390.2 341 65.7
Ciclev10021008m.g Citrus clementina HOM05D005795 ORTHO05D007200 1.1e-105 387.5 344 67.2
ClCG07G015610 Citrullus lanatus HOM05D005795 ORTHO05D007200 1.4e-105 387.1 329 67.8
Dinv44196 Davidia involucrata HOM05D005795 ORTHO05D007200 2.4e-105 386.3 334 67.4
Rhsim02G0076300 Rhododendron simsii HOM05D005795 ORTHO05D007200 2.4e-105 386.3 338 64.5
Manes.04G041300 Manihot esculenta HOM05D005795 ORTHO05D007200 3.5e-104 382.5 336 66.1
Haze_01529 Corylus avellana HOM05D005795 ORTHO05D007200 5.9e-104 381.7 339 67.0
MELO3C017720.2 Cucumis melo HOM05D005795 ORTHO05D007200 1.0e-103 380.9 329 66.9
Thecc.04G314000 Theobroma cacao HOM05D005795 ORTHO05D007200 2.3e-103 379.8 347 66.0
CsaV3_4G003310 Cucumis sativus L. HOM05D005795 ORTHO05D007200 5.0e-103 378.6 329 66.9
CSS0047301 Camellia sinensis var. sinensis HOM05D005795 ORTHO05D007200 8.6e-103 377.9 340 65.3
Cfa015145 Carpinus fangiana HOM05D005795 ORTHO05D007200 1.1e-102 377.5 339 67.3
Duzib212G0505 Durio zibethinus HOM05D005795 ORTHO05D007200 2.5e-102 376.3 347 64.3
RcHm_v2.0_Chr4g0407031 Rosa chinensis HOM05D005795 ORTHO05D007200 3.3e-102 375.9 339 67.6
Actinidia11305 Actinidia chinensis HOM05D005795 ORTHO05D007200 2.8e-101 372.9 338 65.4
CANSAT78G1297 Cannabis sativa HOM05D005795 ORTHO05D007200 5.2e-100 368.6 334 62.0
FAN07G0438 Fragaria x ananassa HOM05D005795 ORTHO05D007200 8.9e-100 367.9 335 66.3
THA.LOC104803670 Tarenaya hassleriana HOM05D005795 ORTHO05D007200 8.9e-100 367.9 338 64.5
FvH4_4g10680 Fragaria vesca HOM05D005795 ORTHO05D007200 3.4e-99 365.9 335 66.3
TWI38G2022 Tripterygium wilfordii HOM05D005795 ORTHO05D007200 5.7e-99 365.2 339 64.9
COL.COLO4_21665 Corchorus olitorius HOM05D005795 ORTHO05D007200 1.3e-98 364.0 343 65.6
Sabra07G0103500 Salix brachista HOM05D005795 ORTHO05D007200 1.7e-98 363.6 336 60.7
Gohir.D05G287100 Gossypium hirsutum HOM05D005795 ORTHO05D007200 2.8e-98 362.8 346 63.6
Sed0015939 Sechium edule HOM05D005795 ORTHO05D007200 8.3e-98 361.3 329 64.7
Gohir.A05G286100 Gossypium hirsutum HOM05D005795 ORTHO05D007200 1.8e-97 360.1 346 63.0
Nn1g09576 Nelumbo nucifera HOM05D005795 ORTHO05D007200 3.2e-97 359.4 334 62.3
Aa31LG10G13730 Aethionema arabicum HOM05D005795 ORTHO05D007200 7.0e-97 358.2 330 65.5
Gorai.009G302100 Gossypium raimondii HOM05D005795 ORTHO05D007200 7.0e-97 358.2 346 63.0
PSO732G0188 Papaver somniferum HOM05D005795 ORTHO05D007200 3.5e-96 355.9 337 62.9
PGR083G1909 Punica granatum HOM05D005795 ORTHO05D007200 4.5e-96 355.5 340 63.8
SalBow3G4461 Salvia bowleyana HOM05D005795 ORTHO05D007200 2.9e-95 352.8 335 62.7
CARHR169760 Cardamine hirsuta HOM05D005795 ORTHO05D007200 3.9e-95 352.4 337 63.5
PSO675G7496 Papaver somniferum HOM05D005795 ORTHO05D007200 1.5e-94 350.5 337 62.0
AT3G59380 Arabidopsis thaliana HOM05D005795 ORTHO05D007200 1.9e-94 350.1 335 63.0
QL10p048508 Quercus lobata HOM05D005795 ORTHO05D007200 4.3e-94 349.0 338 62.1
Thhalv10025709m.g Eutrema salsugineum HOM05D005795 ORTHO05D007200 5.6e-94 348.6 332 64.5
AL5G41280 Arabidopsis lyrata HOM05D005795 ORTHO05D007200 2.8e-93 346.3 338 62.4
Cc08_g05980 Coffea canephora HOM05D005795 ORTHO05D007200 2.8e-93 346.3 338 61.8
C01p27420 Brassica napus HOM05D005795 ORTHO05D007200 3.6e-93 345.9 332 64.5
Peaxi162Scf00375g00059 Petunia axillaris HOM05D005795 ORTHO05D007200 8.0e-93 344.7 333 61.9
HPP92_013540 Vanilla planifolia HOM05D005795 ORTHO05D007200 1.0e-92 344.4 329 57.1
MSTRG.9769 Avicennia marina HOM05D005795 ORTHO05D007200 1.8e-92 343.6 343 61.8
EL10Ac3g05921 Beta vulgaris HOM05D005795 ORTHO05D007200 8.9e-92 341.3 332 61.4
Cc05_g13970 Coffea canephora HOM05D005795 ORTHO05D007200 8.9e-92 341.3 338 61.8
AUR62002291 Chenopodium quinoa HOM05D005795 ORTHO05D007200 2.6e-91 339.7 331 62.5
HanXRQChr07g0186111 Helianthus annuus HOM05D005795 ORTHO05D007200 2.6e-91 339.7 334 58.1
Lsat_1_v5_gn_6_55280 Lactuca sativa HOM05D005795 ORTHO05D007200 3.4e-91 339.3 355 56.3
SGA_v2.0_scaffold136G34981 Striga asiatica HOM05D005795 ORTHO05D007200 3.4e-91 339.3 341 61.6
AUR62015400 Chenopodium quinoa HOM05D005795 ORTHO05D007200 4.4e-91 339.0 331 60.4
Lsat_1_v5_gn_9_14160 Lactuca sativa HOM05D005795 ORTHO05D007200 5.8e-91 338.6 367 55.3
SGA_v2.0_scaffold375G50253 Striga asiatica HOM05D005795 ORTHO05D007200 7.5e-91 338.2 341 62.8
GSVIVG01010747001 Vitis vinifera HOM05D005795 ORTHO05D007200 7.5e-91 338.2 337 62.3
Carub.0005s2612 Capsella rubella HOM05D005795 ORTHO05D007200 2.2e-90 336.7 338 61.2
Prupe.1G191500 Prunus persica HOM05D005795 ORTHO05D007200 2.2e-90 336.7 336 62.5
DCAR_003909 Daucus carota HOM05D005795 ORTHO05D007200 4.9e-90 335.5 334 60.5
Lj6A56T30 Lonicera japonica HOM05D005795 ORTHO05D007200 8.3e-90 334.7 336 62.2
Eucgr.A00077 Eucalyptus grandis HOM05D005795 ORTHO05D007200 1.9e-89 333.6 345 60.6
Atru.chr3.1532 Acer truncatum HOM05D005795 ORTHO05D007200 4.1e-89 332.4 339 61.1
Atru.chr3.1535 Acer truncatum HOM05D005795 ORTHO05D007200 4.1e-89 332.4 339 61.1
Cpa.g.sc41.30 Carica papaya HOM05D005795 ORTHO05D007200 5.4e-89 332.0 342 61.1
Hund03150 Selenicereus undatus HOM05D005795 ORTHO05D007200 9.2e-89 331.3 337 59.1
vmacro15646 Vaccinium macrocarpon HOM05D005795 ORTHO05D007200 7.8e-88 328.2 351 48.7
Zm00001eb102710 Zea mays HOM05D005795 ORTHO05D007200 7.8e-88 328.2 321 63.6
ATR0743G276 Amborella trichopoda HOM05D005795 ORTHO05D007200 5.6e-86 322.0 333 59.5
ECA233G5655 Erigeron canadensis HOM05D005795 ORTHO05D007200 5.6e-86 322.0 337 58.5
MD04G1007300 Malus domestica HOM05D005795 ORTHO05D007200 3.6e-85 319.3 342 58.5
Os09g0514400 Oryza sativa ssp. japonica HOM05D005795 ORTHO05D007200 3.1e-84 316.2 340 59.1
Aqoxy2G04090 Aquilegia oxysepala HOM05D005795 ORTHO05D007200 4.0e-84 315.8 334 56.9
BcaC09g50250 Brassica carinata HOM05D005795 ORTHO05D007200 1.5e-83 313.9 294 67.3
Potri.007G127500 Populus trichocarpa HOM05D005795 ORTHO05D007200 1.7e-82 310.5 334 56.0
Sp7g13790 Schrenkiella parvula HOM05D005795 ORTHO05D007200 3.2e-81 306.2 331 57.4
A01p22030 Brassica napus HOM05D005795 ORTHO05D007200 1.2e-80 304.3 332 59.6
BraA01t02109Z Brassica rapa HOM05D005795 ORTHO05D007200 1.2e-80 304.3 332 59.6
Ah.13g072920 Amaranthus hybridus HOM05D005795 ORTHO05D007200 1.6e-80 303.9 332 51.2
Migut.G00958 Erythranthe guttata HOM05D005795 ORTHO05D007200 1.6e-80 303.9 332 57.2
Sopen06g029770 Solanum pennellii HOM05D005795 ORTHO05D007200 2.1e-80 303.5 332 57.8
Psat1g007200 Pisum sativum HOM05D005795 ORTHO05D007200 6.0e-80 302.0 221 67.9
Solyc06g073390.3 Solanum lycopersicum HOM05D005795 ORTHO05D007200 1.0e-79 301.2 332 57.5
BcaNung00265 Brassica carinata HOM05D005795 ORTHO05D007200 3.3e-78 296.2 332 58.1
PGSC0003DMG400027009 Solanum tuberosum HOM05D005795 ORTHO05D007200 5.6e-78 295.4 338 55.6
unitig_22.g5744 Utricularia gibba HOM05D005795 ORTHO05D007200 1.4e-76 290.8 341 55.1
Nitab4.5_0003132g0100 Nicotiana tabacum HOM05D005795 ORTHO05D007200 5.1e-71 272.3 346 42.5
CAN.G65.180 Capsicum annuum HOM05D005795 ORTHO05D007200 3.3e-70 269.6 296 58.8
CDE08G0443 Ceratophyllum demersum HOM05D005795 ORTHO05D007200 5.6e-70 268.9 334 54.2
Pp3c9_24240 Physcomitrium patens HOM05D005795 ORTHO05D007200 2.1e-69 266.9 324 55.2
TAR633G0878 Trochodendron aralioides HOM05D005795 ORTHO05D007200 7.1e-65 251.9 181 63.0
SMO137G0277 Selaginella moellendorffii HOM05D005795 ORTHO05D007200 2.7e-64 250.0 338 51.5
BcaC06g33415 Brassica carinata HOM05D005795 ORTHO05D007200 5.1e-63 245.7 347 46.7
Hma1.2p1_0754F.1_g213060 Hydrangea macrophylla HOM05D005795 ORTHO05D007200 7.3e-62 241.9 178 60.1
FAN12G2789 Fragaria x ananassa HOM05D005795 ORTHO05D007200 9.6e-62 241.5 176 62.5
FAN12G0695 Fragaria x ananassa HOM05D005795 ORTHO05D007200 1.4e-60 237.7 170 63.5
Mapoly0093s0047 Marchantia polymorpha HOM05D005795 ORTHO05D007200 1.8e-60 237.3 333 52.0
Eucgr.A00272 Eucalyptus grandis HOM05D005795 ORTHO05D007200 5.3e-60 235.7 216 52.3
Eucgr.A00076 Eucalyptus grandis HOM05D005795 ORTHO05D007200 2.9e-58 229.9 220 50.9
Cc05_g03950 Coffea canephora HOM05D005795 ORTHO05D007200 7.9e-56 221.9 181 58.0
SHI30236 Sapria himalayana HOM05D005795 ORTHO05D007200 1.0e-55 221.5 283 41.7
Nitab4.5_0005570g0030 Nicotiana tabacum HOM05D005795 ORTHO05D007200 1.6e-53 214.2 181 54.7
Oeu035829.1 Olea europaea HOM05D005795 ORTHO05D007200 1.9e-49 200.7 205 48.8
Sc03g0006720 Simmondsia chinensis HOM05D005795 ORTHO05D007200 3.5e-48 196.4 178 51.7
BolC1t02678H Brassica oleracea HOM05D005795 ORTHO05D000108 1.8e-47 194.1 181 53.0
BcaC06g32941 Brassica carinata HOM05D005795 ORTHO05D007200 6.5e-42 175.6 222 42.3
FAN17G0508 Fragaria x ananassa HOM05D005795 ORTHO05D007200 6.5e-42 175.6 189 50.3
AagrBONN_evm.TU.Sc2ySwM_228.2319 Anthoceros agrestis HOM05D005795 ORTHO05D007200 4.5e-35 152.9 210 57.1
CBR_g21757 Chara braunii HOM05D005795 ORTHO05D007200 1.4e-33 147.9 344 39.5
MCO13G170 Micromonas commoda HOM05D005795 ORTHO05D007200 1.6e-29 134.4 252 31.3
Eucgr.L02278 Eucalyptus grandis HOM05D005795 ORTHO05D007200 7.7e-27 125.6 108 55.6
Haze_01530 Corylus avellana HOM05D005795 ORTHO05D007200 3.8e-26 123.2 83 72.3
Duzib151G0649 Durio zibethinus HOM05D005795 ORTHO05D007200 3.8e-26 123.2 110 56.4
AagrBONN_evm.TU.Sc2ySwM_117.2773 Anthoceros agrestis HOM05D005795 ORTHO05D007200 1.5e-22 111.3 183 32.8
Cre01.g016950 Chlamydomonas reinhardtii HOM05D005795 ORTHO05D007200 4.3e-22 109.8 265 44.5
TAR633G0840 Trochodendron aralioides HOM05D005795 ORTHO05D007200 4.8e-21 106.3 71 64.8
SHI30240 Sapria himalayana HOM05D005795 ORTHO05D007200 2.4e-20 104.0 72 68.1
Cfa027123 Carpinus fangiana HOM05D004239 ORTHO05D005191 3.8e-18 96.7 361 28.3
A05p02150 Brassica napus HOM05D005795 ORTHO05D007200 2.1e-16 90.9 60 68.3
Cpa.g.sc41.23 Carica papaya HOM05D005795 ORTHO05D007200 7.9e-16 89.0 83 50.6
PSO648G0124 Papaver somniferum HOM05D005795 ORTHO05D007200 7.7e-11 72.4 48 66.7
SGA_v2.0_scaffold28G11802 Striga asiatica HOM05D005795 ORTHO05D007200 5.5e-09 66.2 195 25.6
Cpa.g.sc41.24 Carica papaya HOM05D005795 ORTHO05D007200 6.1e-08 62.8 134 32.1
Gohir.A10G135766 Gossypium hirsutum HOM05D005795 ORTHO05D007200 6.1e-08 62.8 58 51.7
PSO063G4587 Papaver somniferum HOM05D005795 ORTHO05D007200 9.7e-06 55.5 48 56.2


User provided reference genes

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