Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.15G028500 Glycine max HOM05D001295 ORTHO05D005319 1.5e-239 832.4 401 100.0
VMungo1080G0958 Vigna mungo HOM05D001295 ORTHO05D005319 4.9e-195 684.5 401 82.8
Psat5g290520 Pisum sativum HOM05D001295 ORTHO05D005319 2.4e-165 585.9 403 73.7
TPR.G6512 Trifolium pratense HOM05D001295 ORTHO05D005319 1.2e-164 583.6 395 73.2
Medtr2g099125 Medicago truncatula HOM05D001295 ORTHO05D005319 7.7e-164 580.9 401 72.8
Lj3g0016601 Lotus japonicus HOM05D001295 ORTHO05D005319 1.1e-162 577.0 404 73.0
Ca_01246_v3 Cicer arietinum L. HOM05D001295 ORTHO05D005319 9.7e-159 563.9 397 72.8
Phvul.005G154600 Phaseolus vulgaris HOM05D001295 ORTHO05D005319 1.3e-150 537.0 331 82.5
arahy.Tifrunner.gnm1.ann1.982DXJ Arachis hypogaea HOM05D001295 ORTHO05D005319 2.4e-141 506.1 363 71.6
CiPaw.01G095500 Carya illinoinensis HOM05D001295 ORTHO05D005319 4.3e-130 468.8 384 63.5
arahy.Tifrunner.gnm1.ann1.CA0DYB Arachis hypogaea HOM05D001295 ORTHO05D005319 2.0e-127 459.9 387 63.6
Prupe.1G199500 Prunus persica HOM05D001295 ORTHO05D005319 7.5e-127 458.0 390 60.8
GSVIVG01004102001 Vitis vinifera HOM05D001295 ORTHO05D005319 7.5e-127 458.0 391 60.4
arahy.Tifrunner.gnm1.ann1.1HI5HP Arachis hypogaea HOM05D001295 ORTHO05D005319 1.4e-125 453.8 387 63.3
Manes.11G126000 Manihot esculenta HOM05D001295 ORTHO05D005319 2.0e-124 449.9 391 59.1
TAR633G1947 Trochodendron aralioides HOM05D001295 ORTHO05D005319 1.9e-122 443.4 391 60.1
Thecc.04G173300 Theobroma cacao HOM05D001295 ORTHO05D005319 1.4e-120 437.2 389 57.8
Potri.007G132100 Populus trichocarpa HOM05D001295 ORTHO05D005319 5.2e-120 435.3 385 58.7
PGSC0003DMG400026920 Solanum tuberosum HOM05D001295 ORTHO05D005319 1.5e-119 433.7 395 56.5
Atru.chr4.1272 Acer truncatum HOM05D001295 ORTHO05D005319 2.0e-119 433.3 391 57.5
Nn1g09559 Nelumbo nucifera HOM05D001295 ORTHO05D005319 3.4e-119 432.6 335 61.8
Oeu020777.1 Olea europaea HOM05D001295 ORTHO05D005319 7.5e-119 431.4 385 56.6
MD04G1046100 Malus domestica HOM05D001295 ORTHO05D005319 3.7e-118 429.1 398 58.3
Sopen06g029480 Solanum pennellii HOM05D001295 ORTHO05D005319 3.7e-118 429.1 395 56.7
CSS0006680 Camellia sinensis var. sinensis HOM05D001295 ORTHO05D005319 8.3e-118 427.9 362 60.2
CSS0045865 Camellia sinensis var. sinensis HOM05D001295 ORTHO05D005319 1.1e-117 427.6 362 59.9
COL.COLO4_09274 Corchorus olitorius HOM05D001295 ORTHO05D005319 1.4e-117 427.2 389 57.8
Peaxi162Scf00180g00045 Petunia axillaris HOM05D001295 ORTHO05D005319 3.2e-117 426.0 392 55.9
PSO837G0039 Papaver somniferum HOM05D001295 ORTHO05D005319 1.7e-115 420.2 388 56.2
CAN.G65.159 Capsicum annuum HOM05D001295 ORTHO05D005319 3.0e-115 419.5 390 54.9
Solyc06g073130.4 Solanum lycopersicum HOM05D001295 ORTHO05D005319 1.1e-114 417.5 415 53.7
Cc03_g12290 Coffea canephora HOM05D001295 ORTHO05D005319 4.3e-114 415.6 388 55.7
PGR142G2463 Punica granatum HOM05D001295 ORTHO05D005319 7.3e-114 414.8 392 54.6
Lsat_1_v5_gn_3_110661 Lactuca sativa HOM05D001295 ORTHO05D005319 3.6e-113 412.5 390 54.6
HanXRQChr13g0419451 Helianthus annuus HOM05D001295 ORTHO05D005319 4.0e-112 409.1 388 55.2
Gorai.005G126300 Gossypium raimondii HOM05D001295 ORTHO05D005319 8.9e-112 407.9 390 55.4
Cfa015203 Carpinus fangiana HOM05D001295 ORTHO05D005319 2.9e-110 402.9 389 56.0
Sed0017723 Sechium edule HOM05D001295 ORTHO05D005319 4.9e-110 402.1 390 53.3
Nitab4.5_0002553g0060 Nicotiana tabacum HOM05D001295 ORTHO05D005319 2.1e-108 396.7 455 49.0
Migut.G01307 Erythranthe guttata HOM05D001295 ORTHO05D005319 5.1e-107 392.1 389 52.4
DCAR_028425 Daucus carota HOM05D001295 ORTHO05D005319 2.8e-105 386.3 384 52.9
SalBow8G2942 Salvia bowleyana HOM05D001295 ORTHO05D005319 2.8e-105 386.3 398 50.8
HPP92_007597 Vanilla planifolia HOM05D001295 ORTHO05D005319 1.8e-104 383.6 382 51.8
AUR62002356 Chenopodium quinoa HOM05D001295 ORTHO05D005319 4.0e-104 382.5 454 46.7
ATR0743G262 Amborella trichopoda HOM05D001295 ORTHO05D005319 4.4e-103 379.0 400 49.0
QL10p051312 Quercus lobata HOM05D001295 ORTHO05D005319 4.4e-103 379.0 490 46.9
Carub.0004s2592 Capsella rubella HOM05D001295 ORTHO05D005319 7.6e-103 378.3 393 49.1
AL4G42200 Arabidopsis lyrata HOM05D001295 ORTHO05D005319 8.4e-102 374.8 392 49.5
Nitab4.5_0001586g0250 Nicotiana tabacum HOM05D001295 ORTHO05D005319 1.2e-100 370.9 338 55.9
Thhalv10001762m.g Eutrema salsugineum HOM05D001295 ORTHO05D005319 2.7e-100 369.8 386 46.9
Hund12401 Selenicereus undatus HOM05D001295 ORTHO05D005319 2.7e-100 369.8 387 52.7
Sc21g0002910 Simmondsia chinensis HOM05D001295 ORTHO05D005319 1.3e-99 367.5 390 50.5
Gohir.D02G111400 Gossypium hirsutum HOM05D001295 ORTHO05D005319 1.7e-99 367.1 390 51.5
Aa31LG1G25200 Aethionema arabicum HOM05D001295 ORTHO05D005319 8.7e-99 364.8 389 49.4
BraA05t19365Z Brassica rapa HOM05D001295 ORTHO05D005319 1.9e-98 363.6 389 48.3
THA.LOC104803837 Tarenaya hassleriana HOM05D001295 ORTHO05D005319 7.3e-98 361.7 409 46.7
ClCG06G001010 Citrullus lanatus HOM05D001295 ORTHO05D005319 1.6e-97 360.5 391 49.1
Duzib212G0222 Durio zibethinus HOM05D001295 ORTHO05D005319 3.2e-93 346.3 422 48.1
EL10Ac3g06020 Beta vulgaris HOM05D001295 ORTHO05D005319 4.6e-92 342.4 427 46.4
Lalb_Chr14g0372571 Lupinus albus HOM05D001295 ORTHO05D005319 6.0e-92 342.0 297 62.0
Sp4g25550 Schrenkiella parvula HOM05D001295 ORTHO05D005319 7.9e-92 341.7 366 47.0
Gohir.A02G093300 Gossypium hirsutum HOM05D001295 ORTHO05D005319 2.3e-91 340.1 388 48.5
Lalb_Chr22g0352051 Lupinus albus HOM05D001295 ORTHO05D005319 2.1e-89 333.6 284 65.5
Migut.G01305 Erythranthe guttata HOM05D001295 ORTHO05D005319 1.4e-88 330.9 389 46.5
A05p03770 Brassica napus HOM05D001295 ORTHO05D005319 4.0e-88 329.3 366 46.7
Migut.G01326 Erythranthe guttata HOM05D001295 ORTHO05D005319 6.9e-88 328.6 294 56.5
BcaC02g12392 Brassica carinata HOM05D001295 ORTHO05D005319 2.0e-87 327.0 365 47.1
C04p04470 Brassica napus HOM05D001295 ORTHO05D005319 2.0e-87 327.0 365 47.1
BolC4t22080H Brassica oleracea HOM05D001295 ORTHO05D005319 5.8e-87 325.5 365 46.8
BcaB02g08938 Brassica carinata HOM05D001295 ORTHO05D005319 1.6e-84 317.4 368 45.1
AUR62023829 Chenopodium quinoa HOM05D001295 ORTHO05D005319 3.5e-84 316.2 390 44.9
Rhsim09G0020700 Rhododendron simsii HOM05D001295 ORTHO05D005319 1.8e-83 313.9 424 43.4
MELO3C022439.2 Cucumis melo HOM05D001295 ORTHO05D005319 6.2e-81 305.4 392 42.6
RhsimUnG0137700 Rhododendron simsii HOM05D001295 ORTHO05D005319 8.1e-81 305.1 229 64.6
QL10p051666 Quercus lobata HOM05D001295 ORTHO05D005319 1.5e-79 300.8 273 59.7
Dinv05087 Davidia involucrata HOM05D001295 ORTHO05D005319 1.3e-78 297.7 289 55.4
AagrBONN_evm.TU.Sc2ySwM_228.190 Anthoceros agrestis HOM05D001295 ORTHO05D005319 4.2e-77 292.7 405 41.5
SGA_v2.0_scaffold12G06175 Striga asiatica HOM05D001295 ORTHO05D005319 5.1e-75 285.8 369 45.5
Actinidia34573 Actinidia chinensis HOM05D001295 ORTHO05D005319 5.7e-74 282.3 297 51.9
Aqoxy5G00377 Aquilegia oxysepala HOM05D001295 ORTHO05D005319 1.4e-72 277.7 289 50.9
Mapoly0209s0009 Marchantia polymorpha HOM05D001295 ORTHO05D005319 1.8e-72 277.3 336 44.0
PSO017G5265 Papaver somniferum HOM05D001295 ORTHO05D005319 5.9e-71 272.3 284 51.8
Eucgr.H00340 Eucalyptus grandis HOM05D001295 ORTHO05D005319 6.5e-70 268.9 290 52.8
vmacro00676 Vaccinium macrocarpon HOM05D001295 ORTHO05D005319 1.3e-67 261.2 213 62.0
MSTRG.4291 Avicennia marina HOM05D001295 ORTHO05D005319 3.3e-66 256.5 285 49.1
CsaV3_6G006850 Cucumis sativus L. HOM05D005724 ORTHO05D006636 1.4e-64 251.1 309 44.0
Sabra07G0119100 Salix brachista HOM05D001295 ORTHO05D005319 1.5e-63 247.7 378 41.0
SMO337G0100 Selaginella moellendorffii HOM05D001295 ORTHO05D005319 2.2e-62 243.8 266 49.6
TWI15G0408 Tripterygium wilfordii HOM05D001295 ORTHO05D005319 2.5e-61 240.4 273 49.1
unitig_37.g12026 Utricularia gibba HOM05D001295 ORTHO05D005319 1.8e-59 234.2 214 56.1
Sabra07G0107500 Salix brachista HOM05D001295 ORTHO05D005319 4.8e-57 226.1 260 51.5
COL.COLO4_21796 Corchorus olitorius HOM05D001295 ORTHO05D005319 5.9e-55 219.2 260 48.5
ECA240G1882 Erigeron canadensis HOM05D001295 ORTHO05D005319 1.3e-54 218.0 191 55.0
CARHR138550 Cardamine hirsuta HOM05D001295 ORTHO05D005319 1.1e-53 214.9 287 40.8
Ciclev10021666m.g Citrus clementina HOM05D001295 ORTHO05D005319 1.9e-53 214.2 264 45.8
Sabra07G0119300 Salix brachista HOM05D001295 ORTHO05D005319 3.2e-53 213.4 251 50.6
Gohir.D08G098300 Gossypium hirsutum HOM05D001295 ORTHO05D005319 1.6e-52 211.1 248 47.2
Gorai.004G105900 Gossypium raimondii HOM05D001295 ORTHO05D005319 2.1e-52 210.7 260 45.8
Sed0000422 Sechium edule HOM05D001295 ORTHO05D005319 2.0e-50 204.1 253 45.5
RcHm_v2.0_Chr6g0292651 Rosa chinensis HOM05D001295 ORTHO05D005319 1.1e-48 198.4 255 45.5
CsaV3_4G002500 Cucumis sativus L. HOM05D001295 ORTHO05D005319 2.4e-48 197.2 246 48.0
Zm00001eb064040 Zea mays HOM05D001295 ORTHO05D005319 1.2e-47 194.9 271 39.9
ClCG07G011710 Citrullus lanatus HOM05D001295 ORTHO05D005319 2.0e-47 194.1 243 47.7
Lj3C135G1 Lonicera japonica HOM05D001295 ORTHO05D005319 7.7e-47 192.2 213 51.2
THA.LOC104820845 Tarenaya hassleriana HOM05D001295 ORTHO05D005319 2.2e-46 190.7 261 46.4
Manes.04G047700 Manihot esculenta HOM05D001295 ORTHO05D005319 2.9e-46 190.3 242 46.7
Ciclev10021418m.g Citrus clementina HOM05D001295 ORTHO05D005319 5.0e-46 189.5 293 40.3
AT3G03320 Arabidopsis thaliana HOM05D001295 ORTHO05D005319 1.1e-45 188.3 251 44.6
FAN24G0827 Fragaria x ananassa HOM05D001295 ORTHO05D005319 5.5e-45 186.0 255 43.5
FAN27G1301 Fragaria x ananassa HOM05D001295 ORTHO05D005319 1.2e-44 184.9 257 43.6
Gohir.A08G092500 Gossypium hirsutum HOM05D001295 ORTHO05D005319 2.1e-44 184.1 265 42.6
AL3G12950 Arabidopsis lyrata HOM05D001295 ORTHO05D005319 3.6e-44 183.3 254 45.7
FvH4_2g24830 Fragaria vesca HOM05D001295 ORTHO05D005319 1.0e-43 181.8 255 43.1
Thhalv10021391m.g Eutrema salsugineum HOM05D001295 ORTHO05D005319 1.8e-43 181.0 251 43.8
CARHR077360 Cardamine hirsuta HOM05D001295 ORTHO05D005319 2.3e-43 180.6 251 44.2
Carub.0003s0249 Capsella rubella HOM05D001295 ORTHO05D005319 1.2e-42 178.3 257 42.0
Sp3g02350 Schrenkiella parvula HOM05D001295 ORTHO05D005319 2.0e-42 177.6 257 44.0
Lj3g0015879 Lotus japonicus HOM05D001295 ORTHO05D005319 2.6e-42 177.2 157 61.1
Migut.G01331 Erythranthe guttata HOM05D001295 ORTHO05D005319 1.3e-41 174.9 203 49.3
BraA05t23124Z Brassica rapa HOM05D001295 ORTHO05D005319 2.8e-41 173.7 251 43.4
BcaC05g30303 Brassica carinata HOM05D001295 ORTHO05D005319 1.1e-40 171.8 252 43.3
Pp3c13_1370 Physcomitrium patens HOM05D001295 ORTHO05D005319 1.1e-40 171.8 302 38.1
Sabra07G0119200 Salix brachista HOM05D001295 ORTHO05D005319 1.1e-40 171.8 220 46.4
Thecc.04G173200 Theobroma cacao HOM05D001295 ORTHO05D005319 1.4e-40 171.4 206 47.6
FAN15G1214 Fragaria x ananassa HOM05D001295 ORTHO05D005319 3.1e-40 170.2 257 43.2
A05p43870 Brassica napus HOM05D001295 ORTHO05D005319 4.1e-40 169.9 257 42.4
C05p63460 Brassica napus HOM05D001295 ORTHO05D005319 7.0e-40 169.1 251 43.4
BolC5t35010H Brassica oleracea HOM05D001295 ORTHO05D005319 7.0e-40 169.1 257 42.8
Glyma.13G345802 Glycine max HOM05D001295 ORTHO05D005319 1.1e-37 161.8 125 66.4
Aa31LG5G13780 Aethionema arabicum HOM05D001295 ORTHO05D005319 7.2e-37 159.1 274 38.0
Haze_01445 Corylus avellana HOM05D001295 ORTHO05D005319 1.8e-35 154.5 158 53.8
Cpa.g.sc9.324 Carica papaya HOM05D001295 ORTHO05D005319 4.4e-34 149.8 129 61.2
Hma1.2p1_0401F.1_g144800 Hydrangea macrophylla HOM05D001295 ORTHO05D005319 1.3e-33 148.3 152 52.6
AT2G43465 Arabidopsis thaliana HOM05D001295 ORTHO05D005319 2.2e-33 147.5 209 40.2
C01p44730 Brassica napus HOM05D001295 ORTHO05D005319 1.8e-32 144.4 304 30.3
Haze_01447 Corylus avellana HOM05D001295 ORTHO05D005319 8.6e-30 135.6 72 80.6
vmacro00675 Vaccinium macrocarpon HOM05D001295 ORTHO05D005319 3.6e-28 130.2 172 42.4
A09p42860 Brassica napus HOM05D001295 ORTHO05D005319 1.4e-27 128.3 244 32.8
Lalb_Chr14g0372561 Lupinus albus HOM05D001295 ORTHO05D005319 1.8e-27 127.9 64 82.8
SalBow5G4879 Salvia bowleyana HOM05D001295 ORTHO05D005319 1.7e-25 121.3 166 41.6
BolC2t06464H Brassica oleracea HOM05D001295 ORTHO05D005319 2.4e-24 117.5 284 29.9
Lj3A83T16 Lonicera japonica HOM05D001295 ORTHO05D005319 1.4e-16 91.7 66 69.7
Medtr2g027210 Medicago truncatula HOM05D001295 ORTHO05D005319 5.9e-15 86.3 83 54.2
Sabra17G0001700 Salix brachista HOM05D001295 ORTHO05D005319 1.2e-12 78.6 75 56.0
Cre16.g668650 Chlamydomonas reinhardtii HOM05D001295 ORTHO05D005319 2.1e-12 77.8 137 35.8
AL4G36180 Arabidopsis lyrata HOM05D001295 ORTHO05D005319 1.7e-09 68.2 129 38.0
CBR_g21778 Chara braunii HOM05D001295 ORTHO05D005319 2.9e-09 67.4 122 34.4
Sabra17G0000500 Salix brachista HOM05D001295 ORTHO05D005319 2.4e-08 64.3 82 40.2
Sabra17G0001500 Salix brachista HOM05D001295 ORTHO05D005319 7.0e-08 62.8 81 39.5
MELO3C001160.2 Cucumis melo HOM05D001295 ORTHO05D005319 2.7e-07 60.8 51 58.8
Sabra17G0015200 Salix brachista HOM05D001295 ORTHO05D005319 2.7e-07 60.8 181 30.4


User provided reference genes

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