Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.15G027800 Glycine max HOM05D003822 ORTHO05D004484 2.3e-141 505.8 298 100.0
Glyma.13G346400 Glycine max HOM05D003822 ORTHO05D004484 1.1e-130 470.3 302 93.0
VMungo1080G0920 Vigna mungo HOM05D003822 ORTHO05D004484 2.7e-121 439.1 299 86.3
Phvul.005G155400 Phaseolus vulgaris HOM05D003822 ORTHO05D004484 1.7e-107 393.3 301 82.7
QL10p052081 Quercus lobata HOM05D003822 ORTHO05D004484 8.7e-104 380.9 298 76.8
TPR.G6564 Trifolium pratense HOM05D003822 ORTHO05D004484 6.2e-102 374.8 306 72.5
Ca_01239_v3 Cicer arietinum L. HOM05D003822 ORTHO05D004484 5.3e-101 371.7 304 76.3
Haze_01421 Corylus avellana HOM05D003822 ORTHO05D004484 3.8e-99 365.5 304 75.7
Hma1.2p1_0635F.1_g193140 Hydrangea macrophylla HOM05D003822 ORTHO05D004484 6.4e-99 364.8 316 70.9
Lalb_Chr24g0396641 Lupinus albus HOM05D003822 ORTHO05D004484 7.1e-98 361.3 329 67.2
Nn7g37555 Nelumbo nucifera HOM05D003822 ORTHO05D004484 7.1e-98 361.3 299 75.3
Medtr2g099360 Medicago truncatula HOM05D003822 ORTHO05D004484 2.7e-97 359.4 317 73.2
Cfa015215 Carpinus fangiana HOM05D003822 ORTHO05D004484 4.6e-97 358.6 312 74.4
VMungo1127G1572 Vigna mungo HOM05D003822 ORTHO05D004484 7.9e-97 357.8 293 73.4
FAN08G2486 Fragaria x ananassa HOM05D003822 ORTHO05D004484 3.0e-96 355.9 305 71.1
Glyma.11G125400 Glycine max HOM05D003822 ORTHO05D004484 5.1e-96 355.1 300 73.3
Lalb_Chr22g0352031 Lupinus albus HOM05D003822 ORTHO05D004484 5.1e-96 355.1 298 72.5
Potri.017G018400 Populus trichocarpa HOM05D003822 ORTHO05D004484 6.7e-96 354.8 308 75.0
Hma1.2p1_2403F.1_g321420 Hydrangea macrophylla HOM05D003822 ORTHO05D004484 1.1e-95 354.0 315 71.4
Eucgr.A00039 Eucalyptus grandis HOM05D003822 ORTHO05D004484 2.5e-95 352.8 303 71.3
COL.COLO4_29926 Corchorus olitorius HOM05D003822 ORTHO05D004484 3.3e-95 352.4 304 70.1
Prupe.1G200400 Prunus persica HOM05D003822 ORTHO05D004484 9.6e-95 350.9 308 69.5
TAR633G2284 Trochodendron aralioides HOM05D003822 ORTHO05D004484 1.1e-93 347.4 287 74.2
TAR362G1102 Trochodendron aralioides HOM05D003822 ORTHO05D004484 1.4e-93 347.1 306 71.6
Nn1g09539 Nelumbo nucifera HOM05D003822 ORTHO05D004484 1.8e-93 346.7 298 72.8
FAN04G1289 Fragaria x ananassa HOM05D003822 ORTHO05D004484 3.1e-93 345.9 312 72.4
FAN18G3379 Fragaria x ananassa HOM05D003822 ORTHO05D004484 3.1e-93 345.9 314 71.7
Peaxi162Scf00995g00322 Petunia axillaris HOM05D003822 ORTHO05D004484 3.4e-92 342.4 304 68.1
MD04G1046700 Malus domestica HOM05D003822 ORTHO05D004484 4.5e-92 342.0 307 73.6
RcHm_v2.0_Chr1g0340971 Rosa chinensis HOM05D003822 ORTHO05D004484 5.8e-92 341.7 305 67.9
arahy.Tifrunner.gnm1.ann1.0NAL6S Arachis hypogaea HOM05D003822 ORTHO05D004484 7.6e-92 341.3 309 73.5
Gorai.007G162100 Gossypium raimondii HOM05D003822 ORTHO05D004484 7.6e-92 341.3 299 65.9
Gohir.D11G153200 Gossypium hirsutum HOM05D003822 ORTHO05D004484 1.7e-91 340.1 299 65.9
Ciclev10021425m.g Citrus clementina HOM05D003822 ORTHO05D004484 2.2e-91 339.7 294 77.9
Cc02_g30690 Coffea canephora HOM05D003822 ORTHO05D004484 3.8e-91 339.0 293 72.4
arahy.Tifrunner.gnm1.ann1.1KAH27 Arachis hypogaea HOM05D003822 ORTHO05D004484 4.9e-91 338.6 309 73.1
vmacro14674 Vaccinium macrocarpon HOM05D003822 ORTHO05D004484 4.9e-91 338.6 296 72.3
Gohir.A11G145000 Gossypium hirsutum HOM05D003822 ORTHO05D004484 1.4e-90 337.0 299 66.2
RcHm_v2.0_Chr7g0230961 Rosa chinensis HOM05D003822 ORTHO05D004484 1.9e-90 336.7 318 68.9
CiPaw.01G173700 Carya illinoinensis HOM05D003822 ORTHO05D004484 4.2e-90 335.5 301 73.8
CiPaw.02G103400 Carya illinoinensis HOM05D003822 ORTHO05D004484 9.3e-90 334.3 310 71.0
MSTRG.17947 Avicennia marina HOM05D003822 ORTHO05D004484 2.7e-89 332.8 300 69.0
Oeu013421.2 Olea europaea HOM05D003822 ORTHO05D004484 3.5e-89 332.4 300 68.0
Manes.13G057600 Manihot esculenta HOM05D003822 ORTHO05D004484 1.3e-88 330.5 295 72.5
FvH4_5g32960 Fragaria vesca HOM05D003822 ORTHO05D004484 6.7e-88 328.2 304 70.7
SGA_v2.0_scaffold77G25327 Striga asiatica HOM05D003822 ORTHO05D004484 6.7e-88 328.2 299 67.9
TWI36G1391 Tripterygium wilfordii HOM05D003822 ORTHO05D004484 3.3e-87 325.9 304 67.4
TWI36G1709 Tripterygium wilfordii HOM05D003822 ORTHO05D004484 3.3e-87 325.9 304 67.4
Thecc.01G205200 Theobroma cacao HOM05D003822 ORTHO05D004484 1.3e-86 323.9 293 70.6
Lj3g0026330 Lotus japonicus HOM05D003822 ORTHO05D004484 1.6e-86 323.6 312 71.5
Sc19g0002790 Simmondsia chinensis HOM05D003822 ORTHO05D004484 2.1e-86 323.2 298 66.1
TWI18G0659 Tripterygium wilfordii HOM05D003822 ORTHO05D004484 2.4e-85 319.7 304 70.1
AUR62002363 Chenopodium quinoa HOM05D003822 ORTHO05D004484 5.3e-85 318.5 310 67.7
Sabra17G0014400 Salix brachista HOM05D000455 ORTHO05D000434 6.9e-85 318.2 300 69.3
MELO3C017788.2 Cucumis melo HOM05D003822 ORTHO05D004484 2.0e-84 316.6 312 63.5
Duzib211G0255 Durio zibethinus HOM05D003822 ORTHO05D004484 2.6e-84 316.2 298 68.5
Ah.07g202460 Amaranthus hybridus HOM05D003822 ORTHO05D004484 3.4e-84 315.8 301 66.4
Sabra14G0133100 Salix brachista HOM05D003822 ORTHO05D004484 3.4e-84 315.8 297 67.0
Solyc06g007700.4 Solanum lycopersicum HOM05D003822 ORTHO05D004484 5.9e-84 315.1 300 68.3
Eucgr.H00681 Eucalyptus grandis HOM05D003822 ORTHO05D004484 1.7e-83 313.5 310 67.1
ECA236G4570 Erigeron canadensis HOM05D003822 ORTHO05D004484 6.5e-83 311.6 311 62.1
Sabra07G0108500 Salix brachista HOM05D003822 ORTHO05D004484 8.4e-83 311.2 298 66.1
Sabra07G0120800 Salix brachista HOM05D003822 ORTHO05D004484 8.4e-83 311.2 298 66.1
Sed0021377 Sechium edule HOM05D003822 ORTHO05D004484 7.2e-82 308.1 296 70.9
Cpa.g.sc8.23 Carica papaya HOM05D003822 ORTHO05D004484 2.7e-81 306.2 292 68.2
Nitab4.5_0002641g0020 Nicotiana tabacum HOM05D003822 ORTHO05D004484 6.1e-81 305.1 302 66.2
Duzib133G0954 Durio zibethinus HOM05D003822 ORTHO05D004484 1.0e-80 304.3 298 68.1
Lj3g0024368 Lotus japonicus HOM05D003822 ORTHO05D004484 3.0e-80 302.8 295 67.1
Nitab4.5_0003952g0050 Nicotiana tabacum HOM05D003822 ORTHO05D004484 6.7e-80 301.6 311 62.1
TAR365G1107 Trochodendron aralioides HOM05D003822 ORTHO05D004484 6.7e-80 301.6 283 71.4
Ciclev10016105m.g Citrus clementina HOM05D003822 ORTHO05D004484 1.1e-79 300.8 301 65.1
PGR102G0947 Punica granatum HOM05D003822 ORTHO05D004484 1.5e-79 300.4 300 64.3
Hund03185 Selenicereus undatus HOM05D003822 ORTHO05D004484 3.3e-79 299.3 299 63.5
Dinv28779 Davidia involucrata HOM05D003822 ORTHO05D004484 1.3e-78 297.4 287 66.6
Actinidia23132 Actinidia chinensis HOM05D003822 ORTHO05D004484 1.6e-78 297.0 311 58.8
Actinidia34522 Actinidia chinensis HOM05D003822 ORTHO05D004484 2.2e-78 296.6 305 63.3
Sabra17G0002300 Salix brachista HOM05D000455 ORTHO05D000434 8.2e-78 294.7 347 60.5
Sed0005976 Sechium edule HOM05D003822 ORTHO05D004484 8.2e-78 294.7 289 70.6
PSO017G3256 Papaver somniferum HOM05D003822 ORTHO05D004484 1.1e-77 294.3 318 64.5
PSO837G0022 Papaver somniferum HOM05D003822 ORTHO05D004484 3.1e-77 292.7 318 64.2
Aqoxy2G04159 Aquilegia oxysepala HOM05D003822 ORTHO05D004484 4.1e-77 292.4 298 64.4
CANSAT11G1915 Cannabis sativa HOM05D003822 ORTHO05D004484 4.1e-77 292.4 308 68.2
ECA248G1190 Erigeron canadensis HOM05D002050 ORTHO05D001949 5.3e-77 292.0 280 59.6
MD00G1127600 Malus domestica HOM05D003822 ORTHO05D004484 2.0e-76 290.0 298 67.4
HanXRQChr10g0281191 Helianthus annuus HOM05D003822 ORTHO05D004484 3.4e-76 289.3 295 58.3
CANSAT56G4141 Cannabis sativa HOM05D003822 ORTHO05D004484 4.5e-76 288.9 319 66.8
THA.LOC104819024 Tarenaya hassleriana HOM05D003822 ORTHO05D004484 1.3e-75 287.3 300 64.7
Sopen06g002590 Solanum pennellii HOM05D003822 ORTHO05D004484 2.2e-75 286.6 298 64.8
CSS0026869 Camellia sinensis var. sinensis HOM05D003822 ORTHO05D004484 2.9e-75 286.2 291 70.4
CsaV3_4G002560 Cucumis sativus L. HOM05D003822 ORTHO05D004484 2.9e-75 286.2 297 68.0
Duzib138G1354 Durio zibethinus HOM05D003822 ORTHO05D004484 5.0e-75 285.4 299 66.9
unitig_22.g5196 Utricularia gibba HOM05D003822 ORTHO05D004484 5.0e-75 285.4 294 63.3
THA.LOC104822456 Tarenaya hassleriana HOM05D003822 ORTHO05D004484 6.5e-75 285.0 300 59.7
Atru.chr6.3488 Acer truncatum HOM05D003822 ORTHO05D004484 1.4e-74 283.9 313 63.6
Thhalv10021215m.g Eutrema salsugineum HOM05D003822 ORTHO05D004484 3.2e-74 282.7 310 62.6
HanXRQChr01g0010521 Helianthus annuus HOM05D003822 ORTHO05D004484 5.5e-74 282.0 306 64.7
Manes.12G057507 Manihot esculenta HOM05D003822 ORTHO05D004484 2.1e-73 280.0 294 69.7
Manes.12G057905 Manihot esculenta HOM05D003822 ORTHO05D004484 2.1e-73 280.0 294 69.7
EL10Ac3g06027 Beta vulgaris HOM05D003822 ORTHO05D004484 2.7e-73 279.6 301 60.8
Lsat_1_v5_gn_8_98601 Lactuca sativa HOM05D003822 ORTHO05D004484 3.6e-73 279.3 313 62.3
Peaxi162Scf00372g00722 Petunia axillaris HOM05D003822 ORTHO05D004484 6.1e-73 278.5 297 62.3
Sp3g06480 Schrenkiella parvula HOM05D003822 ORTHO05D004484 1.0e-72 277.7 306 63.7
A05p40650 Brassica napus HOM05D003822 ORTHO05D004484 1.4e-72 277.3 298 63.4
BraA05t22796Z Brassica rapa HOM05D003822 ORTHO05D004484 1.4e-72 277.3 298 63.4
AT3G07560 Arabidopsis thaliana HOM05D003822 ORTHO05D004484 2.3e-72 276.6 307 62.2
PGSC0003DMG400020658 Solanum tuberosum HOM05D003822 ORTHO05D004484 3.9e-72 275.8 313 54.6
BcaB03g14694 Brassica carinata HOM05D003822 ORTHO05D004484 5.1e-72 275.4 312 63.5
Manes.12G058903 Manihot esculenta HOM05D003822 ORTHO05D004484 8.8e-72 274.6 298 66.1
Carub.0003s0711 Capsella rubella HOM05D003822 ORTHO05D004484 2.6e-71 273.1 310 62.6
MBI02_g24302_MAGBIO Magnolia biondii HOM05D003822 ORTHO05D004484 2.6e-71 273.1 306 63.7
AL3G18900 Arabidopsis lyrata HOM05D003822 ORTHO05D004484 1.3e-70 270.8 315 61.0
PGR083G0513 Punica granatum HOM05D003822 ORTHO05D004484 6.3e-70 268.5 300 64.0
ClCG07G011660 Citrullus lanatus HOM05D003822 ORTHO05D004484 4.1e-69 265.8 417 47.5
Potri.014G197200 Populus trichocarpa HOM05D003822 ORTHO05D004484 5.3e-69 265.4 308 60.7
HPP92_015668 Vanilla planifolia HOM05D003822 ORTHO05D004484 4.5e-68 262.3 290 64.1
Aa31LG5G18100 Aethionema arabicum HOM05D003822 ORTHO05D004484 1.7e-67 260.4 313 58.5
AUR62023822 Chenopodium quinoa HOM05D003822 ORTHO05D004484 1.4e-66 257.3 293 57.7
Manes.11G127100 Manihot esculenta HOM05D003822 ORTHO05D004484 3.2e-66 256.1 267 61.4
C03p42940 Brassica napus HOM05D003822 ORTHO05D004484 1.6e-65 253.8 311 60.8
C05p59760 Brassica napus HOM05D003822 ORTHO05D004484 2.7e-65 253.1 290 62.4
BcaC01g04277 Brassica carinata HOM05D003822 ORTHO05D004484 1.0e-64 251.1 301 61.1
CDE02G4798 Ceratophyllum demersum HOM05D003822 ORTHO05D004484 1.4e-64 250.8 290 61.0
CDE05G3137 Ceratophyllum demersum HOM05D003822 ORTHO05D004484 1.4e-64 250.8 312 52.6
A03p35330 Brassica napus HOM05D003822 ORTHO05D004484 1.8e-64 250.4 304 62.8
CAN.G181.49 Capsicum annuum HOM05D003822 ORTHO05D004484 6.7e-64 248.4 296 59.1
ATR0752G090 Amborella trichopoda HOM05D003822 ORTHO05D004484 2.8e-62 243.0 302 60.9
BolC5t34630H Brassica oleracea HOM05D003822 ORTHO05D004484 2.8e-62 243.0 308 57.8
Os07g0152800 Oryza sativa ssp. japonica HOM05D003822 ORTHO05D004484 4.8e-62 242.3 290 62.8
Os03g0786000 Oryza sativa ssp. japonica HOM05D003822 ORTHO05D004484 2.4e-61 240.0 291 58.1
BolC3t16562H Brassica oleracea HOM05D003822 ORTHO05D004484 7.0e-61 238.4 304 60.2
SGA_v2.0_scaffold95G28678 Striga asiatica HOM05D003822 ORTHO05D004484 7.0e-61 238.4 225 67.6
BcaB04g21287 Brassica carinata HOM05D003822 ORTHO05D004484 2.2e-59 233.4 296 56.4
Zm00001eb117520 Zea mays HOM05D003822 ORTHO05D004484 2.2e-59 233.4 288 56.6
BcaC05g29550 Brassica carinata HOM05D003822 ORTHO05D004484 2.9e-59 233.0 289 56.4
CSS0006211 Camellia sinensis var. sinensis HOM05D003822 ORTHO05D004484 5.0e-59 232.3 215 69.3
SEGI_01562 Sequoiadendron giganteum HOM05D003822 ORTHO05D004484 3.2e-58 229.6 298 58.4
Migut.N00690 Erythranthe guttata HOM05D003822 ORTHO05D004484 7.2e-58 228.4 303 57.4
Zm00001eb059960 Zea mays HOM05D003822 ORTHO05D004484 3.0e-56 223.0 284 58.5
SEGI_07594 Sequoiadendron giganteum HOM05D003822 ORTHO05D004484 3.3e-55 219.5 314 54.5
Psat5g291600 Pisum sativum HOM05D003822 ORTHO05D004484 4.8e-54 215.7 235 69.4
Lsat_1_v5_gn_5_175601 Lactuca sativa HOM05D003822 ORTHO05D004484 1.8e-53 213.8 295 56.6
Phvul.011G052000 Phaseolus vulgaris HOM05D003822 ORTHO05D004484 2.4e-53 213.4 212 68.4
Gorai.N001500 Gossypium raimondii HOM05D003822 ORTHO05D004484 1.6e-52 210.7 300 49.3
Oeu020438.1 Olea europaea HOM05D003822 ORTHO05D004484 2.7e-52 209.9 210 71.0
Lj2C1109G11 Lonicera japonica HOM05D003822 ORTHO05D004484 7.7e-52 208.4 300 53.7
Actinidia11655 Actinidia chinensis HOM05D003822 ORTHO05D004484 6.5e-51 205.3 215 71.6
PGSC0003DMG400020552 Solanum tuberosum HOM05D003822 ORTHO05D004484 7.2e-50 201.8 211 65.4
BolC1t05546H Brassica oleracea HOM05D003822 ORTHO05D004484 5.4e-45 185.7 248 58.5
MBI18_g24478_MAGBIO Magnolia biondii HOM05D003822 ORTHO05D004484 2.7e-44 183.3 274 48.9
MSTRG.12733 Avicennia marina HOM05D003822 ORTHO05D004484 3.2e-42 176.4 201 61.2
BraA01t04376Z Brassica rapa HOM05D003822 ORTHO05D004484 2.7e-41 173.3 136 64.0
Manes.12G058104 Manihot esculenta HOM05D003822 ORTHO05D004484 1.3e-38 164.5 105 77.1
unitig_8.g3681 Utricularia gibba HOM05D003822 ORTHO05D004484 1.8e-37 160.6 131 75.6
SMO146G0020 Selaginella moellendorffii HOM05D003822 ORTHO05D004484 9.5e-34 148.3 300 44.7
MSTRG.12731 Avicennia marina HOM05D003822 ORTHO05D004484 3.6e-33 146.4 102 68.6
FAN01G1095 Fragaria x ananassa HOM05D003822 ORTHO05D004484 5.2e-32 142.5 213 57.3
Pp3c11_19790 Physcomitrium patens HOM05D003822 ORTHO05D004484 1.5e-31 141.0 318 44.7
Mapoly0080s0067 Marchantia polymorpha HOM05D003822 ORTHO05D004484 2.6e-31 140.2 322 46.3
AagrBONN_evm.TU.Sc2ySwM_368.3329 Anthoceros agrestis HOM05D003822 ORTHO05D004484 4.9e-30 136.0 311 45.0
CBR_g38951 Chara braunii HOM05D003822 ORTHO05D004484 7.0e-29 132.1 330 45.5
CARHR082240 Cardamine hirsuta HOM05D003822 ORTHO05D004484 5.6e-26 122.5 199 58.8
Oeu020439.1 Olea europaea HOM05D003822 ORTHO05D004484 5.6e-26 122.5 85 74.1
CSS0030404 Camellia sinensis var. sinensis HOM05D003822 ORTHO05D004484 4.7e-25 119.4 88 69.3
Atru.chr4.1339 Acer truncatum HOM05D003822 ORTHO05D004484 6.2e-25 119.0 87 70.1
Gohir.A07G157900 Gossypium hirsutum HOM05D003822 ORTHO05D004484 1.8e-24 117.5 103 62.1
FvH4_7g08180 Fragaria vesca HOM05D003822 ORTHO05D046505 3.4e-23 113.2 78 78.2
FAN10G3558 Fragaria x ananassa HOM05D003822 ORTHO05D046505 7.0e-21 105.5 321 33.6
FAN06G0586 Fragaria x ananassa HOM05D003822 ORTHO05D004484 6.0e-20 102.4 104 60.6
Hma1.2p1_0161F.1_g071790 Hydrangea macrophylla HOM05D003822 ORTHO05D004484 1.7e-19 100.9 209 40.2
Eucgr.B03613 Eucalyptus grandis HOM05D003822 ORTHO05D004484 1.1e-18 98.2 70 70.0
Thecc.04G171800 Theobroma cacao HOM05D003822 ORTHO05D004484 5.6e-18 95.9 62 69.4
Eucgr.C02476 Eucalyptus grandis HOM05D003822 ORTHO05D004484 7.3e-18 95.5 63 71.4
CARHR082220 Cardamine hirsuta HOM05D003822 ORTHO05D004484 1.2e-17 94.7 77 66.2
Cre13.g574700 Chlamydomonas reinhardtii HOM05D003822 ORTHO05D004484 2.2e-14 84.0 64 59.4
SEGI_40649 Sequoiadendron giganteum HOM05D003822 ORTHO05D004484 1.1e-13 81.6 103 53.4
MCO15G241 Micromonas commoda HOM05D003822 ORTHO05D004484 2.4e-13 80.5 290 43.4
FAN01G2016 Fragaria x ananassa HOM05D003822 ORTHO05D004484 9.2e-13 78.6 44 90.9
SEGI_02285 Sequoiadendron giganteum HOM05D003822 ORTHO05D004484 1.2e-12 78.2 114 49.1
FAN06G2565 Fragaria x ananassa HOM05D003822 ORTHO05D001690 1.6e-12 77.8 86 57.0
ATR0737G020 Amborella trichopoda HOM05D003822 ORTHO05D004484 2.3e-11 73.9 78 56.4
Sabra06G0076200 Salix brachista HOM05D003822 ORTHO05D349384 4.3e-10 69.7 73 53.4
SEGI_24544 Sequoiadendron giganteum HOM05D003822 ORTHO05D004484 1.5e-07 61.2 100 46.0
CBR_g50337 Chara braunii HOM05D003822 ORTHO05D004484 7.6e-07 58.9 259 44.0
SEGI_25865 Sequoiadendron giganteum HOM05D000010 ORTHO05D004484 7.6e-07 58.9 79 48.1
Zm00001eb392350 Zea mays HOM05D000367 ORTHO05D001438 3.8e-06 56.6 46 67.4
Duzib170G0932 Durio zibethinus HOM05D003822 ORTHO05D004484 6.4e-06 55.8 31 83.9


User provided reference genes

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