Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.15G019600 Glycine max HOM05D002451 ORTHO05D005601 0.0e+00 2126.3 1096 100.0
Glyma.13G354600 Glycine max HOM05D002451 ORTHO05D005601 0.0e+00 1915.6 1138 88.8
Phvul.005G166100 Phaseolus vulgaris HOM05D002451 ORTHO05D005601 0.0e+00 1751.9 1141 80.4
Lj1g0009957 Lotus japonicus HOM05D002451 ORTHO05D005601 0.0e+00 1635.9 1139 75.7
TPR.G6596 Trifolium pratense HOM05D002451 ORTHO05D005601 0.0e+00 1622.1 1140 74.0
Ca_01165_v3 Cicer arietinum L. HOM05D002451 ORTHO05D005601 0.0e+00 1610.9 1140 74.7
Lalb_Chr14g0373021 Lupinus albus HOM05D002451 ORTHO05D005601 0.0e+00 1598.2 1137 73.5
Medtr2g100870 Medicago truncatula HOM05D002451 ORTHO05D005601 0.0e+00 1593.2 1141 73.2
Medtr5g085950 Medicago truncatula HOM05D002451 ORTHO05D005601 0.0e+00 1520.8 1140 70.2
arahy.Tifrunner.gnm1.ann1.65X03I Arachis hypogaea HOM05D002451 ORTHO05D005601 0.0e+00 1474.9 1136 67.5
arahy.Tifrunner.gnm1.ann1.T566S8 Arachis hypogaea HOM05D002451 ORTHO05D005601 0.0e+00 1461.4 1136 67.5
Psat5g295800 Pisum sativum HOM05D002451 ORTHO05D005601 0.0e+00 1421.0 1083 69.4
GSVIVG01016980001 Vitis vinifera HOM05D002451 ORTHO05D005601 0.0e+00 1229.5 1152 57.9
QL05p020031 Quercus lobata HOM05D002451 ORTHO05D005601 0.0e+00 1211.8 1225 55.4
CiPaw.01G231400 Carya illinoinensis HOM05D002451 ORTHO05D005601 0.0e+00 1207.2 1153 57.2
Cfa003647 Carpinus fangiana HOM05D002451 ORTHO05D005601 0.0e+00 1206.8 1149 57.4
Dinv37977 Davidia involucrata HOM05D002451 ORTHO05D005601 0.0e+00 1196.4 1151 57.0
Prupe.3G059000 Prunus persica HOM05D002451 ORTHO05D005601 0.0e+00 1189.9 1163 54.9
MD09G1202800 Malus domestica HOM05D002451 ORTHO05D005601 0.0e+00 1175.2 1152 55.1
Haze_15848 Corylus avellana HOM05D002451 ORTHO05D005601 0.0e+00 1151.7 1166 55.7
TAR636G2911 Trochodendron aralioides HOM05D002451 ORTHO05D005601 0.0e+00 1146.0 1149 54.6
Atru.chr1.3524 Acer truncatum HOM05D002451 ORTHO05D005601 0.0e+00 1144.8 1153 54.9
Manes.11G033500 Manihot esculenta HOM05D002451 ORTHO05D005601 0.0e+00 1132.5 1149 53.8
Potri.003G048800 Populus trichocarpa HOM05D002451 ORTHO05D005601 0.0e+00 1129.8 1150 53.7
Ciclev10024743m.g Citrus clementina HOM05D002451 ORTHO05D005601 0.0e+00 1129.0 1155 53.6
TWI12G0408 Tripterygium wilfordii HOM05D002451 ORTHO05D005601 0.0e+00 1127.9 1155 52.9
RcHm_v2.0_Chr2g0140541 Rosa chinensis HOM05D002451 ORTHO05D005601 0.0e+00 1117.1 1151 51.9
CANSAT56G2471 Cannabis sativa HOM05D002451 ORTHO05D005601 0.0e+00 1108.2 1146 52.9
Duzib192G0210 Durio zibethinus HOM05D002451 ORTHO05D005601 0.0e+00 1103.6 1147 53.7
FAN05G4332 Fragaria x ananassa HOM05D002451 ORTHO05D005601 0.0e+00 1100.1 1150 52.2
Lj9C513G3 Lonicera japonica HOM05D002451 ORTHO05D005601 0.0e+00 1085.9 1137 51.5
Gorai.010G230600 Gossypium raimondii HOM05D002451 ORTHO05D005601 0.0e+00 1084.7 1148 51.5
Gohir.D06G197800 Gossypium hirsutum HOM05D002451 ORTHO05D005601 0.0e+00 1081.6 1148 51.5
Nn8g39071 Nelumbo nucifera HOM05D002451 ORTHO05D005601 0.0e+00 1080.5 1154 51.4
Thecc.06G100100 Theobroma cacao HOM05D002451 ORTHO05D005601 0.0e+00 1076.2 1155 51.9
CsaV3_7G035270 Cucumis sativus L. HOM05D002451 ORTHO05D005601 1.5e-310 1069.7 1152 50.4
Sed0021872 Sechium edule HOM05D002451 ORTHO05D005601 9.7e-310 1067.0 1150 51.0
FAN02G1073 Fragaria x ananassa HOM05D002451 ORTHO05D005601 1.1e-308 1063.5 1125 51.2
COL.COLO4_30513 Corchorus olitorius HOM05D002451 ORTHO05D005601 4.4e-302 1041.6 1147 51.2
Rhsim08G0227600 Rhododendron simsii HOM05D002451 ORTHO05D005601 4.8e-301 1038.1 1212 48.3
Cc04_g02550 Coffea canephora HOM05D002451 ORTHO05D005601 2.9e-298 1028.9 1157 49.1
Actinidia32098 Actinidia chinensis HOM05D002451 ORTHO05D005601 3.6e-296 1021.9 1135 50.2
PGR102G3176 Punica granatum HOM05D002451 ORTHO05D005601 2.3e-295 1019.2 1155 48.1
MELO3C024437.2 Cucumis melo HOM05D002451 ORTHO05D005601 3.8e-290 1001.9 1107 49.0
Sopen03g039860 Solanum pennellii HOM05D002451 ORTHO05D005601 3.2e-289 998.8 1137 47.3
Solyc03g121030.2 Solanum lycopersicum HOM05D002451 ORTHO05D005601 9.4e-289 997.3 1138 47.2
FvH4_6g32400 Fragaria vesca HOM05D002451 ORTHO05D005601 1.6e-288 996.5 1067 51.2
Gohir.A06G189400 Gossypium hirsutum HOM05D002451 ORTHO05D005601 5.2e-287 991.5 1095 50.1
Aqoxy7G01406 Aquilegia oxysepala HOM05D002451 ORTHO05D005601 6.3e-285 984.6 1151 48.2
TWI75G1452 Tripterygium wilfordii HOM05D002451 ORTHO05D005601 3.1e-284 982.2 1153 48.4
PSO063G3373 Papaver somniferum HOM05D002451 ORTHO05D005601 1.1e-281 973.8 1145 47.9
PSO832G2466 Papaver somniferum HOM05D002451 ORTHO05D005601 4.0e-279 965.3 1146 47.9
THA.LOC104809828 Tarenaya hassleriana HOM05D002451 ORTHO05D005601 2.0e-278 963.0 1151 47.9
Sc10g0007590 Simmondsia chinensis HOM05D002451 ORTHO05D005601 3.4e-278 962.2 1159 47.3
AUR62031915 Chenopodium quinoa HOM05D002451 ORTHO05D005601 1.3e-277 960.3 1150 46.6
Eucgr.F03079 Eucalyptus grandis HOM05D002451 ORTHO05D005601 2.2e-277 959.5 1097 48.3
Migut.I00897 Erythranthe guttata HOM05D002451 ORTHO05D005601 2.0e-275 953.0 1149 47.3
MSTRG.11027 Avicennia marina HOM05D002451 ORTHO05D005601 2.3e-271 939.5 1163 46.8
MBI04_g20307_MAGBIO Magnolia biondii HOM05D002451 ORTHO05D005601 1.2e-270 937.2 1225 45.1
AT5G48120 Arabidopsis thaliana HOM05D002451 ORTHO05D005601 1.5e-270 936.8 1150 46.0
AL8G20730 Arabidopsis lyrata HOM05D002451 ORTHO05D005601 1.1e-268 930.6 1147 45.6
Carub.0008s0769 Capsella rubella HOM05D002451 ORTHO05D005601 7.0e-268 927.9 1142 45.4
AUR62022206 Chenopodium quinoa HOM05D002451 ORTHO05D005601 1.3e-266 923.7 1127 46.3
FAN09G4229 Fragaria x ananassa HOM05D002451 ORTHO05D005601 1.3e-266 923.7 1024 50.7
Thhalv10003552m.g Eutrema salsugineum HOM05D002451 ORTHO05D005601 8.6e-266 921.0 1142 46.4
Sp2g18530 Schrenkiella parvula HOM05D002451 ORTHO05D005601 1.8e-263 913.3 1148 44.8
ECA232G2699 Erigeron canadensis HOM05D002451 ORTHO05D005601 3.0e-258 896.0 1139 44.6
HanXRQChr09g0276251 Helianthus annuus HOM05D002451 ORTHO05D005601 1.1e-257 894.0 1140 45.7
BcaB07g30001 Brassica carinata HOM05D002451 ORTHO05D005601 2.8e-256 889.4 1142 44.0
BraA02t08709Z Brassica rapa HOM05D002451 ORTHO05D005601 8.0e-256 887.9 1147 44.0
BcaC03g17628 Brassica carinata HOM05D002451 ORTHO05D005601 2.3e-255 886.3 1147 44.3
BolC2t11683H Brassica oleracea HOM05D002451 ORTHO05D005601 5.8e-254 881.7 1148 44.3
Aa31LG11G5160 Aethionema arabicum HOM05D002451 ORTHO05D005601 2.9e-253 879.4 1157 44.0
Lsat_1_v5_gn_4_97440 Lactuca sativa HOM05D002451 ORTHO05D005601 2.9e-253 879.4 1136 44.6
CARHR259290 Cardamine hirsuta HOM05D002451 ORTHO05D005601 1.1e-252 877.5 1147 43.5
A02p37220 Brassica napus HOM05D002451 ORTHO05D005601 1.9e-252 876.7 1147 43.9
C02p56250 Brassica napus HOM05D002451 ORTHO05D005601 1.9e-252 876.7 1148 44.0
vmacro18852 Vaccinium macrocarpon HOM05D002451 ORTHO05D005601 7.3e-249 864.8 1008 46.7
ATR0705G185 Amborella trichopoda HOM05D002451 ORTHO05D005601 4.7e-248 862.1 1165 43.1
Sabra03G0029300 Salix brachista HOM05D002451 ORTHO05D005601 7.8e-243 844.7 1100 45.5
Nitab4.5_0006902g0020 Nicotiana tabacum HOM05D002451 ORTHO05D005601 6.6e-242 841.6 1133 43.3
CAN.G1143.14 Capsicum annuum HOM05D002451 ORTHO05D005601 1.1e-241 840.9 1026 44.7
Oeu017119.1 Olea europaea HOM05D002451 ORTHO05D005601 7.3e-241 838.2 1056 46.1
Hund07601 Selenicereus undatus HOM05D002451 ORTHO05D005601 3.1e-239 832.8 1147 43.1
FAN14G4820 Fragaria x ananassa HOM05D002451 ORTHO05D005601 3.8e-237 825.9 957 47.3
Ah.01g022090 Amaranthus hybridus HOM05D002451 ORTHO05D005601 4.4e-230 802.4 1138 41.9
SGA_v2.0_scaffold66G22528 Striga asiatica HOM05D002451 ORTHO05D005601 9.6e-225 784.6 1145 40.8
ClCG09G000210 Citrullus lanatus HOM05D002451 ORTHO05D005601 3.6e-224 782.7 934 47.1
EL10Ac9g21204 Beta vulgaris HOM05D002451 ORTHO05D005601 6.4e-221 771.9 1068 42.1
Nitab4.5_0006467g0020 Nicotiana tabacum HOM05D002451 ORTHO05D005601 6.0e-219 765.4 1093 42.4
HPP92_007690 Vanilla planifolia HOM05D002451 ORTHO05D005601 2.3e-218 763.5 1154 39.4
Zm00001eb301230 Zea mays HOM05D002451 ORTHO05D005601 4.5e-214 749.2 1141 39.0
DCAR_023080 Daucus carota HOM05D002451 ORTHO05D005601 1.2e-206 724.5 1147 40.3
Peaxi162Scf00038g01032 Petunia axillaris HOM05D002451 ORTHO05D005601 4.3e-193 679.5 913 42.5
SEGI_26537 Sequoiadendron giganteum HOM05D002451 ORTHO05D005601 8.3e-152 542.3 1057 35.2
Pp3c9_4950 Physcomitrium patens HOM05D002451 ORTHO05D005601 3.9e-133 480.3 1194 30.3
CSS0036196 Camellia sinensis var. sinensis HOM05D002451 ORTHO05D005601 9.9e-121 439.1 446 54.9
Mapoly0036s0119 Marchantia polymorpha HOM05D002451 ORTHO05D005601 8.4e-120 436.0 1202 28.7
Os07g0177100 Oryza sativa ssp. japonica HOM05D002451 ORTHO05D005601 5.8e-113 413.3 588 40.6
TAR624G0206 Trochodendron aralioides HOM05D002451 ORTHO05D005601 4.5e-105 387.1 433 50.1
unitig_88.g27601 Utricularia gibba HOM05D002451 ORTHO05D005601 2.7e-102 377.9 680 35.0
SMO111G0185 Selaginella moellendorffii HOM05D002451 ORTHO05D005601 6.0e-102 376.7 1093 28.5
Aa31LG11G5130 Aethionema arabicum HOM05D002451 ORTHO05D005601 1.4e-98 365.5 446 47.5
Cpa.g.sc25.8 Carica papaya HOM05D002451 ORTHO05D005601 3.8e-96 357.5 507 40.4
CSS0044368 Camellia sinensis var. sinensis HOM05D002451 ORTHO05D005601 9.3e-95 352.8 337 54.0
Aa31sc1931G10 Aethionema arabicum HOM05D002451 ORTHO05D005601 1.8e-93 348.6 530 39.1
CDE05G1834 Ceratophyllum demersum HOM05D002451 ORTHO05D005601 1.6e-91 342.0 439 47.2
ClCG09G000220 Citrullus lanatus HOM05D002451 ORTHO05D005601 1.1e-76 292.7 236 61.9
CDE05G2530 Ceratophyllum demersum HOM05D002451 ORTHO05D005601 4.4e-68 264.2 238 57.1
CBR_g26190 Chara braunii HOM05D002451 ORTHO05D005601 2.8e-67 261.5 1276 24.7
TAR624G0246 Trochodendron aralioides HOM05D002451 ORTHO05D005601 2.4e-66 258.5 196 68.9
Cpa.g.sc25.5 Carica papaya HOM05D002451 ORTHO05D005601 3.1e-66 258.1 285 51.6
Aa31LG9G10330 Aethionema arabicum HOM05D002451 ORTHO05D005601 1.2e-57 229.6 320 42.2
QL05p020001 Quercus lobata HOM05D002451 ORTHO05D005601 1.7e-56 225.7 315 45.4
Psat3g036640 Pisum sativum HOM05D002451 ORTHO05D005601 3.6e-54 218.0 186 64.0
Cpa.g.sc25.4 Carica papaya HOM05D002451 ORTHO05D005601 9.8e-52 209.9 154 66.2
Sc17g0002930 Simmondsia chinensis HOM05D002451 ORTHO05D005601 3.6e-46 191.4 180 57.2
Psat4g171400 Pisum sativum HOM05D002451 ORTHO05D005601 8.0e-46 190.3 138 72.5
Sabra03G0029200 Salix brachista HOM05D002451 ORTHO05D005601 2.2e-43 182.2 185 53.0
HPP92_007773 Vanilla planifolia HOM05D002451 ORTHO05D005601 1.1e-39 169.9 157 54.1
TAR624G0921 Trochodendron aralioides HOM05D002451 ORTHO05D005601 1.3e-35 156.4 222 42.3
TAR624G0431 Trochodendron aralioides HOM05D002451 ORTHO05D005601 4.6e-33 147.9 116 61.2
unitig_88.g27602 Utricularia gibba HOM05D002451 ORTHO05D005601 6.6e-32 144.1 132 56.8
Lj1g0017121 Lotus japonicus HOM05D002451 ORTHO05D005601 1.1e-31 143.3 93 81.7
HPP92_007804 Vanilla planifolia HOM05D002451 ORTHO05D005601 2.2e-27 129.0 195 39.0
EL10Ac9g21205 Beta vulgaris HOM05D002451 ORTHO05D005601 1.4e-26 126.3 177 45.2
SEGI_23779 Sequoiadendron giganteum HOM05D002451 ORTHO05D005601 2.4e-26 125.6 106 56.6
Cpa.g.sc25.3 Carica papaya HOM05D002451 ORTHO05D005601 5.4e-26 124.4 96 65.6
Aa31LG9G10320 Aethionema arabicum HOM05D002451 ORTHO05D005601 2.0e-25 122.5 120 51.7
CSS0026050 Camellia sinensis var. sinensis HOM05D002451 ORTHO05D005601 6.0e-25 120.9 96 61.5
CSS0028178 Camellia sinensis var. sinensis HOM05D002451 ORTHO05D005601 6.0e-25 120.9 96 61.5
A06p15140 Brassica napus HOM05D002451 ORTHO05D020166 7.8e-25 120.6 151 45.0
BraA06t24629Z Brassica rapa HOM05D002451 ORTHO05D020166 7.8e-25 120.6 151 45.0
MCO12G207 Micromonas commoda HOM05D002451 ORTHO05D005601 8.9e-21 107.1 347 26.8
TPR.G18835 Trifolium pratense HOM05D002451 ORTHO05D005601 2.2e-19 102.4 59 83.1
Zm00001eb320400 Zea mays HOM05D002451 ORTHO05D005601 2.2e-19 102.4 258 28.3
TPR.G18837 Trifolium pratense HOM05D002451 ORTHO05D005601 8.3e-19 100.5 73 71.2
SHI11089 Sapria himalayana HOM05D002451 ORTHO05D005601 1.0e-16 93.6 80 58.8
Peaxi162Scf00038g01031 Petunia axillaris HOM05D002451 ORTHO05D005601 7.3e-15 87.4 53 79.2
Cre13.g605050 Chlamydomonas reinhardtii HOM05D002451 ORTHO05D005601 1.2e-14 86.7 174 33.3
Medtr5g055460 Medicago truncatula HOM05D002451 ORTHO05D005601 1.1e-13 83.6 144 38.9
Zm00001eb029900 Zea mays HOM05D002451 ORTHO05D005601 1.1e-13 83.6 90 45.6
SHI11090 Sapria himalayana HOM05D002451 ORTHO05D005601 6.8e-13 80.9 76 48.7
SGA_v2.0_scaffold123G33404 Striga asiatica HOM05D002451 ORTHO05D005601 6.8e-13 80.9 73 47.9
Hund28869 Selenicereus undatus HOM05D002451 ORTHO05D005601 3.7e-11 75.1 64 56.2
Hund28828 Selenicereus undatus HOM05D002451 ORTHO05D005601 1.1e-10 73.6 68 52.9
TPR.G18859 Trifolium pratense HOM05D002451 ORTHO05D005601 2.7e-09 68.9 106 46.2
vmacro17797 Vaccinium macrocarpon HOM05D000003 ORTHO05D000007 4.6e-09 68.2 127 36.2


User provided reference genes

Program Settings