Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.15G014900 Glycine max HOM05D006908 ORTHO05D008662 7.5e-175 617.1 309 100.0
VMungo1080G1808 Vigna mungo HOM05D006908 ORTHO05D008662 1.0e-139 500.4 326 80.4
Phvul.005G170700 Phaseolus vulgaris HOM05D006908 ORTHO05D008662 9.5e-138 493.8 340 75.6
Lj3g0017668 Lotus japonicus HOM05D006908 ORTHO05D008662 1.4e-136 490.0 322 77.3
Ca_01120_v3 Cicer arietinum L. HOM05D006908 ORTHO05D008662 5.8e-127 458.0 322 73.6
TPR.G37174 Trifolium pratense HOM05D006908 ORTHO05D008662 1.3e-126 456.8 322 73.0
Medtr2g102040 Medicago truncatula HOM05D006908 ORTHO05D008662 2.2e-126 456.1 327 71.9
Lalb_Chr22g0351301 Lupinus albus HOM05D006908 ORTHO05D008662 3.5e-124 448.7 326 72.4
arahy.Tifrunner.gnm1.ann1.0IDI1A Arachis hypogaea HOM05D006908 ORTHO05D008662 1.1e-122 443.7 323 70.6
arahy.Tifrunner.gnm1.ann1.UK934I Arachis hypogaea HOM05D006908 ORTHO05D008662 1.1e-122 443.7 323 70.6
Psat5g298720 Pisum sativum HOM05D006908 ORTHO05D008662 4.6e-116 421.8 276 75.4
FAN05G1986 Fragaria x ananassa HOM05D006908 ORTHO05D008662 3.5e-108 395.6 329 61.1
FAN09G3067 Fragaria x ananassa HOM05D006908 ORTHO05D008662 6.0e-108 394.8 329 60.8
CiPaw.01G238600 Carya illinoinensis HOM05D006908 ORTHO05D008662 5.1e-107 391.7 328 61.3
GSVIVG01017098001 Vitis vinifera HOM05D006908 ORTHO05D008662 1.1e-106 390.6 325 59.4
Duzib160G0703 Durio zibethinus HOM05D006908 ORTHO05D008662 1.5e-106 390.2 323 60.4
Haze_16403 Corylus avellana HOM05D006908 ORTHO05D008662 2.5e-106 389.4 322 59.9
QL05p023344 Quercus lobata HOM05D006908 ORTHO05D008662 2.5e-106 389.4 323 61.6
Thecc.06G089400 Theobroma cacao HOM05D006908 ORTHO05D008662 9.6e-106 387.5 327 58.7
RcHm_v2.0_Chr2g0138011 Rosa chinensis HOM05D006908 ORTHO05D008662 1.3e-105 387.1 334 60.8
Gorai.006G098400 Gossypium raimondii HOM05D006908 ORTHO05D008662 1.6e-105 386.7 328 57.9
MD17G1194300 Malus domestica HOM05D006908 ORTHO05D008662 2.8e-105 386.0 316 63.0
Eucgr.J02986 Eucalyptus grandis HOM05D006908 ORTHO05D008662 3.7e-105 385.6 306 63.1
COL.COLO4_30388 Corchorus olitorius HOM05D006908 ORTHO05D008662 8.1e-105 384.4 329 59.3
FvH4_6g31280 Fragaria vesca HOM05D006908 ORTHO05D008662 8.1e-105 384.4 327 60.6
Sabra01G0145800 Salix brachista HOM05D006908 ORTHO05D008662 4.5e-103 378.6 328 60.1
Atru.chr1.3281 Acer truncatum HOM05D006908 ORTHO05D008662 1.3e-102 377.1 331 58.3
Hma1.2p1_0323F.1_g125120 Hydrangea macrophylla HOM05D006908 ORTHO05D008662 3.2e-101 372.5 326 56.7
PGR102G2040 Punica granatum HOM05D006908 ORTHO05D008662 1.2e-100 370.5 327 58.7
Dinv38042 Davidia involucrata HOM05D006908 ORTHO05D008662 2.1e-100 369.8 327 58.1
CANSAT56G3342 Cannabis sativa HOM05D006908 ORTHO05D008662 1.0e-99 367.5 312 59.0
Lj5C59T9 Lonicera japonica HOM05D006908 ORTHO05D008662 1.8e-99 366.7 330 56.1
Prupe.3G070300 Prunus persica HOM05D006908 ORTHO05D008662 8.7e-99 364.4 330 59.7
Rhsim08G0222000 Rhododendron simsii HOM05D006908 ORTHO05D008662 2.5e-98 362.8 337 55.2
MELO3C012958.2 Cucumis melo HOM05D006908 ORTHO05D008662 4.3e-98 362.1 335 55.8
CsaV3_3G025130 Cucumis sativus L. HOM05D006908 ORTHO05D008662 4.3e-98 362.1 329 56.8
Nn8g39204 Nelumbo nucifera HOM05D006908 ORTHO05D008662 4.3e-98 362.1 332 58.1
TAR626G0624 Trochodendron aralioides HOM05D006908 ORTHO05D008662 4.3e-98 362.1 354 55.6
ClCG07G013040 Citrullus lanatus HOM05D006908 ORTHO05D008662 9.6e-98 360.9 339 55.5
PSO782G4818 Papaver somniferum HOM05D006908 ORTHO05D008662 9.6e-98 360.9 325 57.5
SalBow2G2262 Salvia bowleyana HOM05D006908 ORTHO05D008662 1.6e-97 360.1 328 57.0
Manes.11G045900 Manihot esculenta HOM05D006908 ORTHO05D008662 1.4e-96 357.1 307 60.9
EL10Ac9g22006 Beta vulgaris HOM05D006908 ORTHO05D008662 2.4e-96 356.3 331 55.9
DCAR_023055 Daucus carota HOM05D006908 ORTHO05D008662 3.1e-96 355.9 332 56.9
Actinidia01807 Actinidia chinensis HOM05D006908 ORTHO05D008662 4.1e-96 355.5 325 56.0
ECA247G1365 Erigeron canadensis HOM05D006908 ORTHO05D008662 4.1e-96 355.5 326 55.8
Oeu063957.2 Olea europaea HOM05D006908 ORTHO05D008662 4.1e-96 355.5 316 57.0
PSO063G2605 Papaver somniferum HOM05D006908 ORTHO05D008662 1.5e-95 353.6 325 56.0
Hund06614 Selenicereus undatus HOM05D006908 ORTHO05D008662 3.4e-95 352.4 317 55.5
PGSC0003DMG400005687 Solanum tuberosum HOM05D006908 ORTHO05D008662 2.2e-94 349.7 331 55.6
MSTRG.11073 Avicennia marina HOM05D006908 ORTHO05D008662 3.8e-94 349.0 325 55.4
Sed0021689 Sechium edule HOM05D006908 ORTHO05D008662 3.8e-94 349.0 333 53.5
Sopen03g039000 Solanum pennellii HOM05D006908 ORTHO05D008662 5.0e-94 348.6 330 55.5
CAN.G438.72 Capsicum annuum HOM05D006908 ORTHO05D008662 1.1e-93 347.4 328 55.5
vmacro18903 Vaccinium macrocarpon HOM05D006908 ORTHO05D008662 1.1e-93 347.4 375 49.6
Gohir.D09G082700 Gossypium hirsutum HOM05D006908 ORTHO05D008662 3.2e-93 345.9 328 53.7
HanXRQChr02g0032801 Helianthus annuus HOM05D006908 ORTHO05D008662 7.2e-93 344.7 329 54.1
Ciclev10025928m.g Citrus clementina HOM05D006908 ORTHO05D008662 9.3e-93 344.4 365 51.0
Nitab4.5_0002308g0060 Nicotiana tabacum HOM05D006908 ORTHO05D008662 2.1e-92 343.2 328 56.4
Sc10g0007370 Simmondsia chinensis HOM05D006908 ORTHO05D008662 3.5e-92 342.4 340 52.4
TWI75G1463 Tripterygium wilfordii HOM05D006908 ORTHO05D008662 2.3e-91 339.7 308 57.1
Cc04_g03340 Coffea canephora HOM05D006908 ORTHO05D008662 3.0e-91 339.3 325 54.5
Sp5g35850 Schrenkiella parvula HOM05D006908 ORTHO05D008662 6.7e-91 338.2 313 54.6
Carub.0002s2758 Capsella rubella HOM05D006908 ORTHO05D008662 8.7e-91 337.8 306 54.6
AUR62042927 Chenopodium quinoa HOM05D006908 ORTHO05D008662 1.5e-90 337.0 352 51.7
CARHR074570 Cardamine hirsuta HOM05D006908 ORTHO05D008662 1.9e-90 336.7 305 55.7
Ah.01g005440 Amaranthus hybridus HOM05D006908 ORTHO05D008662 5.7e-90 335.1 327 53.5
Thhalv10018901m.g Eutrema salsugineum HOM05D006908 ORTHO05D008662 1.3e-89 334.0 314 53.8
Aqoxy7G01689 Aquilegia oxysepala HOM05D006908 ORTHO05D008662 1.6e-89 333.6 337 54.0
Zm00001eb275430 Zea mays HOM05D006908 ORTHO05D008662 2.2e-89 333.2 335 51.0
CSS0010187 Camellia sinensis var. sinensis HOM05D006908 ORTHO05D008662 2.8e-89 332.8 269 61.7
HPP92_003725 Vanilla planifolia HOM05D006908 ORTHO05D008662 2.8e-89 332.8 311 53.7
Migut.I00872 Erythranthe guttata HOM05D006908 ORTHO05D008662 3.7e-89 332.4 322 55.0
Gohir.A09G082800 Gossypium hirsutum HOM05D006908 ORTHO05D008662 6.3e-89 331.6 321 52.6
Potri.001G181200 Populus trichocarpa HOM05D006908 ORTHO05D008662 2.6e-87 326.2 281 60.9
CDE02G0011 Ceratophyllum demersum HOM05D006908 ORTHO05D008662 5.9e-87 325.1 320 55.3
Os06g0639300 Oryza sativa ssp. japonica HOM05D006908 ORTHO05D008662 7.7e-87 324.7 334 51.2
BcaC08g47561 Brassica carinata HOM05D006908 ORTHO05D008662 1.2e-84 317.4 308 53.6
Solyc03g120130.4 Solanum lycopersicum HOM05D006908 ORTHO05D008662 7.9e-84 314.7 331 51.1
AT1G79915 Arabidopsis thaliana HOM05D006908 ORTHO05D008662 2.3e-83 313.2 305 54.1
BcaC08g47592 Brassica carinata HOM05D002960 ORTHO05D003632 2.3e-83 313.2 316 50.9
THA.LOC104812520 Tarenaya hassleriana HOM05D006908 ORTHO05D008662 6.7e-83 311.6 344 48.5
Aa31LG4G230 Aethionema arabicum HOM05D006908 ORTHO05D008662 2.8e-81 306.2 344 48.8
BolC6t40444H Brassica oleracea HOM05D002960 ORTHO05D003632 4.5e-79 298.9 342 47.1
C06p54330 Brassica napus HOM05D002960 ORTHO05D003632 1.7e-78 297.0 341 46.9
Nitab4.5_0000671g0150 Nicotiana tabacum HOM05D006908 ORTHO05D008662 1.7e-78 297.0 330 50.6
BraA07t32051Z Brassica rapa HOM05D006908 ORTHO05D008662 2.9e-78 296.2 317 49.8
AUR62016450 Chenopodium quinoa HOM05D006908 ORTHO05D008662 3.2e-77 292.7 288 53.8
SEGI_13943 Sequoiadendron giganteum HOM05D006908 ORTHO05D008662 1.2e-76 290.8 348 45.1
unitig_52.g17450 Utricularia gibba HOM05D006908 ORTHO05D008662 1.6e-76 290.4 322 48.8
ATR0602G186 Amborella trichopoda HOM05D006908 ORTHO05D008662 3.0e-75 286.2 254 56.7
Peaxi162Scf00015g00453 Petunia axillaris HOM05D006908 ORTHO05D008662 2.6e-74 283.1 326 48.8
Hma1.2p1_0323F.1_g125130 Hydrangea macrophylla HOM05D006908 ORTHO05D008662 2.8e-73 279.6 326 47.2
Cfa002075 Carpinus fangiana HOM05D006908 ORTHO05D008662 3.7e-73 279.3 245 59.2
SHI10939 Sapria himalayana HOM05D006908 ORTHO05D008662 8.2e-73 278.1 251 56.6
Cpa.g.sc0.185 Carica papaya HOM05D006908 ORTHO05D008662 2.4e-72 276.6 209 65.6
Mapoly0072s0004 Marchantia polymorpha HOM05D006908 ORTHO05D008662 3.6e-68 262.7 338 43.2
MBI15_g13424_MAGBIO Magnolia biondii HOM05D006908 ORTHO05D008662 2.6e-66 256.5 272 53.3
A07p45490 Brassica napus HOM05D006908 ORTHO05D008662 2.2e-65 253.4 367 42.0
Pp3c16_8290 Physcomitrium patens HOM05D006908 ORTHO05D008662 2.5e-61 240.0 286 43.7
AagrBONN_evm.TU.Sc2ySwM_344.5185 Anthoceros agrestis HOM05D006908 ORTHO05D008662 1.6e-60 237.3 322 42.2
CSS0029579 Camellia sinensis var. sinensis HOM05D006908 ORTHO05D008662 4.0e-59 232.6 180 62.2
Lsat_1_v5_gn_1_35121 Lactuca sativa HOM05D006908 ORTHO05D008662 5.2e-59 232.3 216 54.6
AUR62033073 Chenopodium quinoa HOM05D006908 ORTHO05D008662 1.3e-57 227.6 270 49.3
CBR_g20274 Chara braunii HOM05D006908 ORTHO05D008662 5.0e-54 215.7 311 37.3
BcaC04g22058 Brassica carinata HOM05D006908 ORTHO05D008662 1.4e-48 197.6 312 40.4
FAN02G3381 Fragaria x ananassa HOM05D006908 ORTHO05D008662 6.6e-46 188.7 229 48.9
C09p24020 Brassica napus HOM05D006908 ORTHO05D008662 1.5e-34 151.0 181 47.0
SGA_v2.0_scaffold37G14828 Striga asiatica HOM05D006908 ORTHO05D008662 6.6e-30 135.6 144 52.1
SMO347G0515 Selaginella moellendorffii HOM05D006908 ORTHO05D008662 1.5e-29 134.4 135 50.4
AL2G41640 Arabidopsis lyrata HOM05D006908 ORTHO05D008662 1.2e-23 114.8 166 39.2
Cpa.g.sc41.12 Carica papaya HOM05D006908 ORTHO05D008662 1.9e-21 107.5 85 62.4
BolC9t55322H Brassica oleracea HOM05D006908 ORTHO05D008662 2.5e-21 107.1 89 58.4
Actinidia32749 Actinidia chinensis HOM05D006908 ORTHO05D008662 2.6e-18 97.1 79 59.5
Pp3c3_3430 Physcomitrium patens HOM05D002956 ORTHO05D008031 1.4e-08 64.7 146 32.2
MCO09G596 Micromonas commoda HOM05D002956 ORTHO05D008031 2.1e-07 60.8 187 25.7
TWI31G0384 Tripterygium wilfordii HOM05D002956 ORTHO05D008031 2.1e-07 60.8 174 23.6
CANSAT54G1478 Cannabis sativa HOM05D002956 ORTHO05D008031 3.5e-07 60.1 146 27.4
FvH4_3g28160 Fragaria vesca HOM05D002956 ORTHO05D008031 4.6e-07 59.7 148 29.1
Gohir.A07G121300 Gossypium hirsutum HOM05D002956 ORTHO05D008031 4.6e-07 59.7 201 22.4
Potri.009G068400 Populus trichocarpa HOM05D002956 ORTHO05D008031 7.8e-07 58.9 158 26.6
Cre17.g747647 Chlamydomonas reinhardtii HOM05D002553 ORTHO05D002767 1.7e-06 57.8 207 27.1
Gorai.001G135400 Gossypium raimondii HOM05D002956 ORTHO05D008031 1.7e-06 57.8 108 27.8
Mapoly0115s0038 Marchantia polymorpha HOM05D001602 ORTHO05D001470 1.7e-06 57.8 164 28.7
Gohir.D07G125600 Gossypium hirsutum HOM05D002956 ORTHO05D008031 2.3e-06 57.4 198 21.7
MD00G1134600 Malus domestica HOM05D002956 ORTHO05D008031 2.3e-06 57.4 100 30.0
Os07g0641600 Oryza sativa ssp. japonica HOM05D002956 ORTHO05D008031 2.3e-06 57.4 157 26.1
Carub.0002s0099 Capsella rubella HOM05D006745 ORTHO05D008449 3.0e-06 57.0 200 28.0
CARHR160400 Cardamine hirsuta HOM05D005677 ORTHO05D006966 5.1e-06 56.2 143 30.1
MCO15G679 Micromonas commoda HOM05D014140 ORTHO05D015854 5.1e-06 56.2 192 27.6
Prupe.4G260400 Prunus persica HOM05D002956 ORTHO05D008031 5.1e-06 56.2 148 27.0
Migut.N00678 Erythranthe guttata HOM05D006745 ORTHO05D008449 8.7e-06 55.5 179 29.6
Nn1g00671 Nelumbo nucifera HOM05D001602 ORTHO05D001470 8.7e-06 55.5 146 32.2
PSO782G0075 Papaver somniferum HOM05D001602 ORTHO05D001470 8.7e-06 55.5 181 29.8


User provided reference genes

Program Settings