Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.15G010600 Glycine max HOM05D002282 ORTHO05D002403 1.9e-56 222.2 112 100.0
Glyma.13G363200 Glycine max HOM05D002282 ORTHO05D002403 7.2e-43 177.2 104 87.5
arahy.Tifrunner.gnm1.ann1.CV1QS0 Arachis hypogaea HOM05D002282 ORTHO05D002403 2.6e-37 158.7 104 77.9
arahy.Tifrunner.gnm1.ann1.NNZF0Z Arachis hypogaea HOM05D002282 ORTHO05D002403 2.6e-37 158.7 104 77.9
VMungo0331G0533 Vigna mungo HOM05D002282 ORTHO05D002403 3.4e-37 158.3 104 79.8
Phvul.010G153600 Phaseolus vulgaris HOM05D002282 ORTHO05D002403 7.7e-37 157.1 104 78.8
Lalb_Chr04g0262501 Lupinus albus HOM05D002282 ORTHO05D002403 1.7e-36 156.0 104 77.9
Glyma.07G032500 Glycine max HOM05D002282 ORTHO05D002403 3.8e-36 154.8 104 78.8
Glyma.08G210000 Glycine max HOM05D002282 ORTHO05D002403 3.8e-36 154.8 104 77.9
TPR.G3896 Trifolium pratense HOM05D002282 ORTHO05D002403 1.2e-34 149.8 104 74.0
TPR.G8058 Trifolium pratense HOM05D002282 ORTHO05D002403 1.6e-34 149.4 104 74.0
Psat7g255200 Pisum sativum HOM05D002282 ORTHO05D002403 1.0e-33 146.7 104 74.0
Lj3g0004862 Lotus japonicus HOM05D002282 ORTHO05D002403 4.4e-32 141.4 104 73.1
Medtr4g011300 Medicago truncatula HOM05D002282 ORTHO05D002403 7.4e-32 140.6 104 74.0
Dinv30569 Davidia involucrata HOM05D002282 ORTHO05D002403 1.2e-29 133.3 104 66.3
MD15G1387900 Malus domestica HOM05D002282 ORTHO05D002403 1.5e-29 132.9 105 68.6
TAR383G0492 Trochodendron aralioides HOM05D002282 ORTHO05D002403 2.6e-29 132.1 104 67.3
FAN25G3025 Fragaria x ananassa HOM05D002282 ORTHO05D002403 5.9e-29 131.0 104 64.4
CANSAT56G4088 Cannabis sativa HOM05D002282 ORTHO05D002403 7.7e-29 130.6 104 63.5
Nitab4.5_0002257g0110 Nicotiana tabacum HOM05D002282 ORTHO05D002403 7.7e-29 130.6 104 63.5
Sabra01G0138500 Salix brachista HOM05D002282 ORTHO05D002403 7.7e-29 130.6 111 62.2
Prupe.6G012700 Prunus persica HOM05D002282 ORTHO05D002403 1.3e-28 129.8 104 66.3
CAN.G407.112 Capsicum annuum HOM05D002282 ORTHO05D002403 1.7e-28 129.4 104 63.5
PGSC0003DMG400000602 Solanum tuberosum HOM05D002282 ORTHO05D002403 3.8e-28 128.3 104 63.5
COL.COLO4_12890 Corchorus olitorius HOM05D002282 ORTHO05D002403 5.0e-28 127.9 107 61.7
CsaV3_7G032650 Cucumis sativus L. HOM05D002282 ORTHO05D002403 5.0e-28 127.9 104 65.4
Nitab4.5_0006574g0100 Nicotiana tabacum HOM05D002282 ORTHO05D002403 5.0e-28 127.9 101 63.4
Potri.001G173300 Populus trichocarpa HOM05D002282 ORTHO05D002403 5.0e-28 127.9 104 63.5
RcHm_v2.0_Chr5g0081181 Rosa chinensis HOM05D002282 ORTHO05D002403 5.0e-28 127.9 104 62.5
Sed0003011 Sechium edule HOM05D002282 ORTHO05D002403 5.0e-28 127.9 101 65.3
Sed0027048 Sechium edule HOM05D002282 ORTHO05D002403 5.0e-28 127.9 101 64.4
RcHm_v2.0_Chr1g0331681 Rosa chinensis HOM05D002282 ORTHO05D002403 6.5e-28 127.5 104 62.5
FAN11G0586 Fragaria x ananassa HOM05D002282 ORTHO05D002403 8.5e-28 127.1 104 62.5
MELO3C023398.2 Cucumis melo HOM05D002282 ORTHO05D002403 1.1e-27 126.7 101 64.4
Oeu045971.1 Olea europaea HOM05D002282 ORTHO05D002403 1.4e-27 126.3 104 61.5
Sopen03g035310 Solanum pennellii HOM05D002282 ORTHO05D002403 1.4e-27 126.3 104 62.5
FAN16G2654 Fragaria x ananassa HOM05D002282 ORTHO05D002403 1.9e-27 125.9 104 62.5
MBI04_g10418_MAGBIO Magnolia biondii HOM05D002282 ORTHO05D002403 1.9e-27 125.9 104 61.5
GSVIVG01017246001 Vitis vinifera HOM05D002282 ORTHO05D002403 2.5e-27 125.6 105 66.7
Potri.003G060900 Populus trichocarpa HOM05D002282 ORTHO05D002403 4.2e-27 124.8 104 63.5
COL.COLO4_23901 Corchorus olitorius HOM05D002282 ORTHO05D002403 5.5e-27 124.4 107 62.6
Solyc03g116380.4 Solanum lycopersicum HOM05D002282 ORTHO05D002403 7.2e-27 124.0 104 61.5
TWI18G0202 Tripterygium wilfordii HOM05D002282 ORTHO05D002403 7.2e-27 124.0 101 64.4
Cpa.g.sc336.4 Carica papaya HOM05D002282 ORTHO05D002403 9.4e-27 123.6 104 59.6
Lj5A68G60 Lonicera japonica HOM05D002282 ORTHO05D002403 9.4e-27 123.6 104 59.6
Ciclev10025131m.g Citrus clementina HOM05D002282 ORTHO05D002403 1.2e-26 123.2 104 61.5
Gohir.A05G124900 Gossypium hirsutum HOM05D002282 ORTHO05D002403 1.6e-26 122.9 107 58.9
Atru.chr1.3116 Acer truncatum HOM05D002282 ORTHO05D002403 2.1e-26 122.5 104 61.5
SalBow1G0696 Salvia bowleyana HOM05D002282 ORTHO05D002403 2.7e-26 122.1 104 59.6
Thecc.06G073800 Theobroma cacao HOM05D002282 ORTHO05D002403 2.7e-26 122.1 107 59.8
Gohir.D05G125900 Gossypium hirsutum HOM05D002282 ORTHO05D002403 3.6e-26 121.7 107 58.9
Gorai.009G129900 Gossypium raimondii HOM05D002282 ORTHO05D002403 4.7e-26 121.3 107 58.9
Peaxi162Scf00274g00850 Petunia axillaris HOM05D002282 ORTHO05D002403 4.7e-26 121.3 104 61.5
Duzib235G0185 Durio zibethinus HOM05D002282 ORTHO05D002403 6.1e-26 120.9 107 63.6
Rhsim08G0216500 Rhododendron simsii HOM05D002282 ORTHO05D002403 8.0e-26 120.6 104 56.7
HanXRQChr04g0096701 Helianthus annuus HOM05D002282 ORTHO05D002403 1.4e-25 119.8 104 60.6
HanXRQChr04g0097161 Helianthus annuus HOM05D002282 ORTHO05D002403 1.4e-25 119.8 104 60.6
HanXRQChr04g0097221 Helianthus annuus HOM05D002282 ORTHO05D002403 1.4e-25 119.8 104 60.6
DCAR_025482 Daucus carota HOM05D002282 ORTHO05D002403 1.8e-25 119.4 104 61.5
Cc04_g04050 Coffea canephora HOM05D002282 ORTHO05D002403 2.3e-25 119.0 104 58.7
Nn2g11949 Nelumbo nucifera HOM05D002282 ORTHO05D002403 2.3e-25 119.0 104 62.5
ClCG09G002680 Citrullus lanatus HOM05D002282 ORTHO05D002403 6.7e-25 117.5 113 58.4
CiPaw.01G244200 Carya illinoinensis HOM05D002282 ORTHO05D002403 1.1e-24 116.7 113 56.6
CSS0048718 Camellia sinensis var. sinensis HOM05D002282 ORTHO05D002403 1.5e-24 116.3 104 57.7
Aqoxy7G02081 Aquilegia oxysepala HOM05D002282 ORTHO05D002403 4.4e-24 114.8 105 61.0
MSTRG.1400 Avicennia marina HOM05D002282 ORTHO05D002403 4.4e-24 114.8 104 60.6
Lsat_1_v5_gn_1_33521 Lactuca sativa HOM05D002282 ORTHO05D002403 4.4e-24 114.8 104 56.7
Actinidia15798 Actinidia chinensis HOM05D002282 ORTHO05D002403 1.3e-23 113.2 104 57.7
Ca_20422_v3 Cicer arietinum L. HOM05D002282 ORTHO05D002403 1.3e-23 113.2 84 71.4
THA.LOC104812495 Tarenaya hassleriana HOM05D002282 ORTHO05D002403 1.7e-23 112.8 105 58.1
PSO339G0191 Papaver somniferum HOM05D002282 ORTHO05D002403 2.2e-23 112.5 102 55.9
Actinidia01770 Actinidia chinensis HOM05D002282 ORTHO05D002403 2.8e-23 112.1 104 57.7
PGR031G0824 Punica granatum HOM05D002282 ORTHO05D002403 2.8e-23 112.1 101 58.4
SHI18081 Sapria himalayana HOM05D002282 ORTHO05D002403 2.8e-23 112.1 104 55.8
QL06p023750 Quercus lobata HOM05D002282 ORTHO05D002403 6.3e-23 110.9 110 59.1
Hund06582 Selenicereus undatus HOM05D002282 ORTHO05D002403 6.3e-23 110.9 101 59.4
Haze_05779 Corylus avellana HOM05D002282 ORTHO05D002403 8.2e-23 110.5 108 57.4
Sc12g0008870 Simmondsia chinensis HOM05D002282 ORTHO05D002403 1.1e-22 110.2 111 55.0
CiPaw.02G154700 Carya illinoinensis HOM05D002282 ORTHO05D002403 1.8e-22 109.4 114 54.4
ECA247G0800 Erigeron canadensis HOM05D002282 ORTHO05D002403 1.8e-22 109.4 104 58.7
Eucgr.I02097 Eucalyptus grandis HOM05D002282 ORTHO05D002403 1.8e-22 109.4 102 62.7
Hund00550 Selenicereus undatus HOM05D002282 ORTHO05D002403 1.8e-22 109.4 104 55.8
Aa31LG3G13660 Aethionema arabicum HOM05D002282 ORTHO05D002403 2.4e-22 109.0 104 54.8
Ah.01g020860 Amaranthus hybridus HOM05D000121 ORTHO05D000102 7.0e-22 107.5 104 54.8
CARHR015980 Cardamine hirsuta HOM05D002282 ORTHO05D002403 7.0e-22 107.5 106 51.9
AUR62011569 Chenopodium quinoa HOM05D002282 ORTHO05D002403 9.1e-22 107.1 104 51.9
AUR62016386 Chenopodium quinoa HOM05D002282 ORTHO05D002403 9.1e-22 107.1 104 51.9
Sp1g13790 Schrenkiella parvula HOM05D002282 ORTHO05D002403 9.1e-22 107.1 106 52.8
C08p17190 Brassica napus HOM05D002282 ORTHO05D002403 1.2e-21 106.7 104 53.8
BolC8t49348H Brassica oleracea HOM05D002282 ORTHO05D002403 1.2e-21 106.7 104 53.8
Carub.0001s1522 Capsella rubella HOM05D002282 ORTHO05D002403 1.6e-21 106.3 104 54.8
Migut.C01081 Erythranthe guttata HOM05D002282 ORTHO05D002403 1.6e-21 106.3 104 51.9
SGA_v2.0_scaffold52G18905 Striga asiatica HOM05D002282 ORTHO05D002403 1.6e-21 106.3 104 52.9
AT1G15420 Arabidopsis thaliana HOM05D002282 ORTHO05D002403 2.0e-21 105.9 106 52.8
Manes.04G116700 Manihot esculenta HOM05D002282 ORTHO05D002403 2.6e-21 105.5 89 61.8
HPP92_021532 Vanilla planifolia HOM05D002282 ORTHO05D002403 2.6e-21 105.5 104 54.8
FvH4_3g44480 Fragaria vesca HOM05D002282 ORTHO05D002403 3.5e-21 105.1 90 60.0
HPP92_021486 Vanilla planifolia HOM05D002282 ORTHO05D002403 3.5e-21 105.1 104 53.8
MD15G1388000 Malus domestica HOM05D002282 ORTHO05D002403 5.9e-21 104.4 87 67.8
PSO170G0153 Papaver somniferum HOM05D002282 ORTHO05D002403 7.7e-21 104.0 97 55.7
Thhalv10008433m.g Eutrema salsugineum HOM05D002282 ORTHO05D002403 1.3e-20 103.2 106 52.8
BcaC07g38789 Brassica carinata HOM05D002282 ORTHO05D002403 1.7e-20 102.8 104 52.9
BcaB03g13061 Brassica carinata HOM05D002282 ORTHO05D002403 2.2e-20 102.4 104 51.9
Sabra03G0035200 Salix brachista HOM05D002282 ORTHO05D002403 2.9e-20 102.1 124 50.0
vmacro18959 Vaccinium macrocarpon HOM05D002282 ORTHO05D002403 2.9e-20 102.1 104 54.8
EL10Ac9g21953 Beta vulgaris HOM05D000121 ORTHO05D000102 3.8e-20 101.7 104 51.0
PSO782G5325 Papaver somniferum HOM05D002282 ORTHO05D002403 6.5e-20 100.9 91 57.1
AL1G27540 Arabidopsis lyrata HOM05D002282 ORTHO05D002403 8.5e-20 100.5 106 50.9
BcaC05g25485 Brassica carinata HOM05D002282 ORTHO05D002403 1.1e-19 100.1 104 50.0
C05p13600 Brassica napus HOM05D002282 ORTHO05D002403 1.1e-19 100.1 104 50.0
BolC5t30096H Brassica oleracea HOM05D002282 ORTHO05D002403 1.1e-19 100.1 104 50.0
Lj3g0012512 Lotus japonicus HOM05D002282 ORTHO05D002403 1.1e-19 100.1 66 75.8
BraA06t24325Z Brassica rapa HOM05D002282 ORTHO05D002403 1.5e-19 99.8 104 50.0
A08p31580 Brassica napus HOM05D002282 ORTHO05D002403 1.9e-19 99.4 104 51.0
BraA08t35080Z Brassica rapa HOM05D002282 ORTHO05D002403 1.9e-19 99.4 104 51.0
A06p11480 Brassica napus HOM05D002282 ORTHO05D002403 3.2e-19 98.6 104 50.0
Os01g0649000 Oryza sativa ssp. japonica HOM05D002282 ORTHO05D002403 5.5e-19 97.8 104 53.8
QL05p027693 Quercus lobata HOM05D002282 ORTHO05D002403 7.2e-19 97.4 136 45.6
Zm00001eb294740 Zea mays HOM05D002282 ORTHO05D002403 9.4e-19 97.1 104 51.9
BcaC07g41500 Brassica carinata HOM05D002282 ORTHO05D002403 2.1e-18 95.9 105 48.6
BolC8t52042H Brassica oleracea HOM05D002282 ORTHO05D002403 2.1e-18 95.9 105 48.6
CDE07G0270 Ceratophyllum demersum HOM05D002282 ORTHO05D002403 4.7e-18 94.7 104 49.0
Duzib192G0585 Durio zibethinus HOM05D002282 ORTHO05D002403 8.0e-18 94.0 71 63.4
Glyma.14G118600 Glycine max HOM05D002282 ORTHO05D002403 2.3e-17 92.4 62 77.4
ATR0580G098 Amborella trichopoda HOM05D002282 ORTHO05D002403 4.0e-17 91.7 105 48.6
C08p44950 Brassica napus HOM05D002282 ORTHO05D002403 1.2e-16 90.1 74 58.1
FAN21G1567 Fragaria x ananassa HOM05D002282 ORTHO05D002403 5.7e-16 87.8 82 58.5
unitig_747.g21506 Utricularia gibba HOM05D002282 ORTHO05D002403 9.7e-16 87.0 94 48.9
Os12g0634800 Oryza sativa ssp. japonica HOM05D002282 ORTHO05D002403 2.8e-15 85.5 107 47.7
A09p61400 Brassica napus HOM05D002282 ORTHO05D002403 8.2e-15 84.0 106 46.2
BcaB03g14539 Brassica carinata HOM05D002282 ORTHO05D002403 1.8e-14 82.8 79 54.4
MD14G1090800 Malus domestica HOM05D002282 ORTHO05D002403 1.2e-13 80.1 105 50.5
BraA09t41510Z Brassica rapa HOM05D002282 ORTHO05D002403 4.5e-13 78.2 91 49.5
MD12G1094900 Malus domestica HOM05D002282 ORTHO05D002403 1.6e-10 69.7 65 61.5
AagrBONN_evm.TU.Sc2ySwM_362.229 Anthoceros agrestis HOM05D002282 ORTHO05D002403 3.4e-08 62.0 101 33.7
Pp3c7_70 Physcomitrium patens HOM05D002282 ORTHO05D002403 9.8e-08 60.5 76 44.7
HanXRQChr04g0097171 Helianthus annuus HOM05D004669 ORTHO05D005767 3.7e-07 58.5 44 63.6
Mapoly0078s0006 Marchantia polymorpha HOM05D002282 ORTHO05D002403 3.7e-07 58.5 101 35.6
HanXRQChr00c0540g0575621 Helianthus annuus HOM05D002282 ORTHO05D002403 1.4e-06 56.6 43 62.8


User provided reference genes

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