Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.15G008700 Glycine max HOM05D004884 ORTHO05D005873 6.1e-82 307.4 148 100.0
VMungo0331G0880 Vigna mungo HOM05D004884 ORTHO05D005873 4.1e-70 268.1 130 98.5
Phvul.010G154800 Phaseolus vulgaris HOM05D004884 ORTHO05D005873 9.1e-70 266.9 130 97.7
Glyma.08G211500 Glycine max HOM05D004884 ORTHO05D005873 1.2e-69 266.5 130 97.7
Glyma.07G031300 Glycine max HOM05D004884 ORTHO05D005873 1.7e-68 262.7 130 96.9
Lj3g0000080 Lotus japonicus HOM05D004884 ORTHO05D005873 1.7e-68 262.7 130 95.4
Psat5g301920 Pisum sativum HOM05D004884 ORTHO05D005873 1.7e-68 262.7 130 95.4
Lalb_Chr04g0262431 Lupinus albus HOM05D004884 ORTHO05D005873 6.5e-68 260.8 130 93.8
Lalb_Chr22g0350881 Lupinus albus HOM05D004884 ORTHO05D005873 6.5e-68 260.8 130 94.6
QL05p029075 Quercus lobata HOM05D004884 ORTHO05D005873 8.5e-68 260.4 129 94.6
RcHm_v2.0_Chr2g0135941 Rosa chinensis HOM05D004884 ORTHO05D005873 8.5e-68 260.4 130 93.8
Medtr2g103690 Medicago truncatula HOM05D004884 ORTHO05D005873 1.4e-67 259.6 130 94.6
MD17G1208900 Malus domestica HOM05D004884 ORTHO05D005873 2.5e-67 258.8 130 94.6
Prupe.3G084300 Prunus persica HOM05D004884 ORTHO05D005873 3.2e-67 258.5 130 94.6
PGR031G3479 Punica granatum HOM05D004884 ORTHO05D005873 7.2e-67 257.3 130 94.6
THA.LOC104808231 Tarenaya hassleriana HOM05D004884 ORTHO05D005873 2.1e-66 255.8 130 93.1
FvH4_6g29940 Fragaria vesca HOM05D004884 ORTHO05D005873 4.7e-66 254.6 130 92.3
FAN14G1538 Fragaria x ananassa HOM05D004884 ORTHO05D005873 4.7e-66 254.6 130 92.3
THA.LOC104812503 Tarenaya hassleriana HOM05D004884 ORTHO05D005873 6.1e-66 254.2 130 90.8
Eucgr.F02527 Eucalyptus grandis HOM05D004884 ORTHO05D005873 1.4e-65 253.1 130 90.8
FAN09G2574 Fragaria x ananassa HOM05D004884 ORTHO05D005873 1.4e-65 253.1 130 91.5
Dinv30589 Davidia involucrata HOM05D004884 ORTHO05D005873 1.8e-65 252.7 128 93.0
COL.COLO4_12946 Corchorus olitorius HOM05D004884 ORTHO05D005873 2.3e-65 252.3 130 91.5
Lsat_1_v5_gn_1_2440 Lactuca sativa HOM05D004884 ORTHO05D005873 2.3e-65 252.3 130 90.8
ECA240G3509 Erigeron canadensis HOM05D004884 ORTHO05D005873 3.0e-65 251.9 130 90.8
FAN02G1988 Fragaria x ananassa HOM05D004884 ORTHO05D005873 3.0e-65 251.9 130 91.5
Thecc.06G021400 Theobroma cacao HOM05D004884 ORTHO05D005873 6.7e-65 250.8 130 90.8
HanXRQChr02g0046821 Helianthus annuus HOM05D004884 ORTHO05D005873 8.8e-65 250.4 130 90.0
ECA247G2927 Erigeron canadensis HOM05D001354 ORTHO05D002582 2.0e-64 249.2 130 90.0
GSVIVG01017313001 Vitis vinifera HOM05D004884 ORTHO05D005873 2.0e-64 249.2 130 90.8
CiPaw.08G011500 Carya illinoinensis HOM05D004884 ORTHO05D005873 2.6e-64 248.8 129 89.1
Gohir.D10G076700 Gossypium hirsutum HOM05D004884 ORTHO05D005873 2.6e-64 248.8 130 91.5
Hma1.2p1_0515F.1_g170110 Hydrangea macrophylla HOM05D004884 ORTHO05D005873 2.6e-64 248.8 130 90.0
CAN.G407.94 Capsicum annuum HOM05D004884 ORTHO05D005873 4.4e-64 248.1 130 89.2
Aqoxy1G02408 Aquilegia oxysepala HOM05D004884 ORTHO05D005873 7.4e-64 247.3 128 90.6
Duzib235G0621 Durio zibethinus HOM05D004884 ORTHO05D005873 7.4e-64 247.3 130 90.0
Oeu052257.1 Olea europaea HOM05D004884 ORTHO05D005873 7.4e-64 247.3 130 90.0
Aa31LG4G430 Aethionema arabicum HOM05D004884 ORTHO05D005873 9.7e-64 246.9 128 89.1
Oeu045160.1 Olea europaea HOM05D004884 ORTHO05D005873 9.7e-64 246.9 130 90.0
Solyc03g116600.3 Solanum lycopersicum HOM05D004884 ORTHO05D005873 9.7e-64 246.9 130 88.5
Sopen03g035510 Solanum pennellii HOM05D004884 ORTHO05D005873 9.7e-64 246.9 130 88.5
SGA_v2.0_scaffold117G32369 Striga asiatica HOM05D004884 ORTHO05D005873 9.7e-64 246.9 130 90.0
MSTRG.9432 Avicennia marina HOM05D004884 ORTHO05D005873 1.7e-63 246.1 130 89.2
CSS0003587 Camellia sinensis var. sinensis HOM05D004884 ORTHO05D005873 1.7e-63 246.1 128 90.6
Cc04_g04240 Coffea canephora HOM05D004884 ORTHO05D005873 1.7e-63 246.1 130 89.2
SalBow3G1656 Salvia bowleyana HOM05D004884 ORTHO05D005873 1.7e-63 246.1 130 89.2
PSO455G0277 Papaver somniferum HOM05D004884 ORTHO05D005873 2.8e-63 245.4 130 88.5
Atru.chr1.2995 Acer truncatum HOM05D004884 ORTHO05D005873 3.7e-63 245.0 130 90.8
PGSC0003DMG400000635 Solanum tuberosum HOM05D004884 ORTHO05D005873 3.7e-63 245.0 130 87.7
Migut.D01065 Erythranthe guttata HOM05D004884 ORTHO05D005873 4.8e-63 244.6 130 88.5
Solyc06g068080.4 Solanum lycopersicum HOM05D004884 ORTHO05D005873 4.8e-63 244.6 130 88.5
Sopen06g025360 Solanum pennellii HOM05D004884 ORTHO05D005873 4.8e-63 244.6 130 88.5
PGSC0003DMG400028511 Solanum tuberosum HOM05D004884 ORTHO05D005873 4.8e-63 244.6 130 88.5
Manes.04G114100 Manihot esculenta HOM05D004884 ORTHO05D005873 6.3e-63 244.2 128 90.6
Carub.0001s1514 Capsella rubella HOM05D004884 ORTHO05D005873 8.2e-63 243.8 130 85.4
Ciclev10026708m.g Citrus clementina HOM05D004884 ORTHO05D005873 8.2e-63 243.8 130 90.0
ClCG05G016940 Citrullus lanatus HOM05D004884 ORTHO05D005873 1.1e-62 243.4 130 87.7
MELO3C003694.2 Cucumis melo HOM05D004884 ORTHO05D005873 1.1e-62 243.4 130 87.7
Gohir.A10G074700 Gossypium hirsutum HOM05D004884 ORTHO05D005873 1.1e-62 243.4 130 90.0
PSO170G2441 Papaver somniferum HOM05D004884 ORTHO05D005873 1.1e-62 243.4 130 87.7
AL1G27470 Arabidopsis lyrata HOM05D004884 ORTHO05D005873 1.4e-62 243.0 128 86.7
AT1G15370 Arabidopsis thaliana HOM05D004884 ORTHO05D005873 1.4e-62 243.0 128 86.7
Potri.001G193100 Populus trichocarpa HOM05D004884 ORTHO05D005873 1.4e-62 243.0 130 86.9
Sabra01G0135700 Salix brachista HOM05D004884 ORTHO05D005873 1.4e-62 243.0 130 86.9
Cfa013154 Carpinus fangiana HOM05D004884 ORTHO05D005873 1.8e-62 242.7 130 86.9
FAN05G0038 Fragaria x ananassa HOM05D004884 ORTHO05D005873 1.8e-62 242.7 150 80.0
CsaV3_3G046450 Cucumis sativus L. HOM05D004884 ORTHO05D005873 2.4e-62 242.3 130 86.9
Rhsim10G0061400 Rhododendron simsii HOM05D004884 ORTHO05D005873 3.1e-62 241.9 128 85.2
Actinidia18100 Actinidia chinensis HOM05D004884 ORTHO05D005873 4.1e-62 241.5 128 85.9
CARHR015900 Cardamine hirsuta HOM05D004884 ORTHO05D005873 4.1e-62 241.5 128 85.9
Sp1g13700 Schrenkiella parvula HOM05D004884 ORTHO05D005873 4.1e-62 241.5 130 85.4
BcaB03g14545 Brassica carinata HOM05D004884 ORTHO05D005873 5.3e-62 241.1 130 85.4
BcaC05g25475 Brassica carinata HOM05D004884 ORTHO05D005873 5.3e-62 241.1 130 85.4
BcaC05g25490 Brassica carinata HOM05D004884 ORTHO05D005873 5.3e-62 241.1 130 85.4
A06p11400 Brassica napus HOM05D004884 ORTHO05D005873 5.3e-62 241.1 130 85.4
A09p61460 Brassica napus HOM05D004884 ORTHO05D005873 5.3e-62 241.1 130 85.4
C05p13510 Brassica napus HOM05D004884 ORTHO05D005873 5.3e-62 241.1 130 85.4
C08p45030 Brassica napus HOM05D004884 ORTHO05D005873 5.3e-62 241.1 130 85.4
BolC5t30088H Brassica oleracea HOM05D004884 ORTHO05D005873 5.3e-62 241.1 130 85.4
BraA06t24317Z Brassica rapa HOM05D004884 ORTHO05D005873 5.3e-62 241.1 130 85.4
BraA09t41517Z Brassica rapa HOM05D004884 ORTHO05D005873 5.3e-62 241.1 130 85.4
Thhalv10009024m.g Eutrema salsugineum HOM05D004884 ORTHO05D005873 5.3e-62 241.1 130 85.4
vmacro20098 Vaccinium macrocarpon HOM05D004884 ORTHO05D005873 5.3e-62 241.1 130 85.4
MBI04_g07835_MAGBIO Magnolia biondii HOM05D004884 ORTHO05D005873 1.2e-61 240.0 128 87.5
QL02p021869 Quercus lobata HOM05D004884 ORTHO05D005873 1.2e-61 240.0 129 85.3
TAR636G0424 Trochodendron aralioides HOM05D004884 ORTHO05D005873 1.2e-61 240.0 128 87.5
Nn2g12037 Nelumbo nucifera HOM05D004884 ORTHO05D005873 1.6e-61 239.6 130 85.4
BcaC07g41506 Brassica carinata HOM05D004884 ORTHO05D005873 2.0e-61 239.2 130 84.6
BolC8t52049H Brassica oleracea HOM05D004884 ORTHO05D005873 2.0e-61 239.2 130 84.6
Peaxi162Scf00207g00728 Petunia axillaris HOM05D004884 ORTHO05D005873 2.0e-61 239.2 130 88.5
ATR1120G077 Amborella trichopoda HOM05D004884 ORTHO05D005873 3.5e-61 238.4 130 83.8
Sed0027624 Sechium edule HOM05D004884 ORTHO05D005873 3.5e-61 238.4 130 85.4
CDE04G3015 Ceratophyllum demersum HOM05D004884 ORTHO05D005873 7.7e-61 237.3 128 85.9
CSS0011163 Camellia sinensis var. sinensis HOM05D004884 ORTHO05D005873 1.0e-60 236.9 128 85.2
Thhalv10019295m.g Eutrema salsugineum HOM05D004884 ORTHO05D005873 1.0e-60 236.9 130 83.8
unitig_747.g21296 Utricularia gibba HOM05D004884 ORTHO05D005873 1.0e-60 236.9 130 82.3
AUR62012381 Chenopodium quinoa HOM05D004884 ORTHO05D005873 6.5e-60 234.2 130 83.8
TWI75G0638 Tripterygium wilfordii HOM05D004884 ORTHO05D005873 6.5e-60 234.2 130 83.1
Solyc11g008330.3 Solanum lycopersicum HOM05D004884 ORTHO05D005873 3.2e-59 231.9 129 84.5
Zm00001eb064920 Zea mays HOM05D004884 ORTHO05D005873 4.2e-59 231.5 128 83.6
TWI34G0752 Tripterygium wilfordii HOM05D004884 ORTHO05D005873 1.6e-58 229.6 130 80.8
EL10Ac2g04219 Beta vulgaris HOM05D004884 ORTHO05D005873 1.4e-57 226.5 140 77.1
Nitab4.5_0006187g0010 Nicotiana tabacum HOM05D004884 ORTHO05D005873 2.3e-57 225.7 130 83.8
Nitab4.5_0013106g0010 Nicotiana tabacum HOM05D004884 ORTHO05D005873 2.3e-57 225.7 121 87.6
Peaxi162Scf00332g00767 Petunia axillaris HOM05D004884 ORTHO05D005873 2.3e-57 225.7 130 86.2
Sed0022166 Sechium edule HOM05D004884 ORTHO05D005873 6.7e-57 224.2 122 84.4
Gohir.D06G099800 Gossypium hirsutum HOM05D004884 ORTHO05D005873 1.2e-56 223.4 126 81.7
Gorai.010G114700 Gossypium raimondii HOM05D004884 ORTHO05D005873 2.6e-56 222.2 126 81.0
arahy.Tifrunner.gnm1.ann1.Q10AU9 Arachis hypogaea HOM05D004884 ORTHO05D005873 2.2e-55 219.2 113 92.9
arahy.Tifrunner.gnm1.ann1.W4DERE Arachis hypogaea HOM05D004884 ORTHO05D005873 2.2e-55 219.2 113 92.9
CAN.G321.60 Capsicum annuum HOM05D004884 ORTHO05D005873 2.4e-54 215.7 121 84.3
AUR62031521 Chenopodium quinoa HOM05D004884 ORTHO05D005873 1.2e-53 213.4 180 61.1
Dinv38109 Davidia involucrata HOM05D000250 ORTHO05D002477 1.9e-51 206.1 106 90.6
AUR62012868 Chenopodium quinoa HOM05D004884 ORTHO05D005873 2.5e-51 205.7 128 75.0
EL10Ac9g22900 Beta vulgaris HOM05D004884 ORTHO05D005873 4.2e-51 204.9 130 73.8
Nitab4.5_0001764g0110 Nicotiana tabacum HOM05D004884 ORTHO05D005873 1.2e-50 203.4 105 90.5
Actinidia36285 Actinidia chinensis HOM05D004884 ORTHO05D005873 4.7e-50 201.4 106 86.8
Gorai.011G082800 Gossypium raimondii HOM05D004884 ORTHO05D005873 4.7e-50 201.4 106 90.6
SMO143G0054 Selaginella moellendorffii HOM05D004884 ORTHO05D005873 2.3e-49 199.1 128 71.9
Sc23g0006790 Simmondsia chinensis HOM05D004884 ORTHO05D005873 4.0e-49 198.4 106 85.8
SalBow6G6988 Salvia bowleyana HOM05D004884 ORTHO05D005873 6.8e-49 197.6 104 90.4
Peaxi162Scf00145g01210 Petunia axillaris HOM05D004884 ORTHO05D005873 2.6e-48 195.7 112 80.4
Potri.006G253700 Populus trichocarpa HOM05D004884 ORTHO05D005873 2.6e-48 195.7 116 76.7
Pp3c18_11860 Physcomitrium patens HOM05D004884 ORTHO05D005873 7.5e-48 194.1 140 64.3
Sabra06G0198100 Salix brachista HOM05D004884 ORTHO05D005873 3.7e-47 191.8 106 82.1
QL05p029040 Quercus lobata HOM05D004884 ORTHO05D005873 2.9e-44 182.2 109 81.7
AagrBONN_evm.TU.Sc2ySwM_368.2705 Anthoceros agrestis HOM05D004884 ORTHO05D005873 5.0e-44 181.4 139 61.9
Mapoly0005s0226 Marchantia polymorpha HOM05D004884 ORTHO05D005873 1.5e-43 179.9 128 60.9
Gorai.001G184900 Gossypium raimondii HOM05D004884 ORTHO05D005873 1.2e-40 170.2 102 80.4
CDE06G1547 Ceratophyllum demersum HOM05D004884 ORTHO05D005873 1.5e-40 169.9 100 79.0
Sopen11g004140 Solanum pennellii HOM05D004884 ORTHO05D005873 2.0e-40 169.5 104 76.9
Gohir.D07G161600 Gossypium hirsutum HOM05D004884 ORTHO05D005873 1.7e-39 166.4 102 79.4
Nitab4.5_0005235g0010 Nicotiana tabacum HOM05D004884 ORTHO05D005873 1.1e-38 163.7 119 67.2
Haze_21525 Corylus avellana HOM05D004884 ORTHO05D005873 8.6e-36 154.1 125 63.2
Gohir.D13G076450 Gossypium hirsutum HOM05D004884 ORTHO05D005873 7.3e-35 151.0 84 84.5
CBR_g8585 Chara braunii HOM05D004884 ORTHO05D005873 1.0e-33 147.1 125 56.8
Gorai.013G087100 Gossypium raimondii HOM05D004884 ORTHO05D005873 1.5e-32 143.3 89 79.8
BcaC07g41508 Brassica carinata HOM05D004884 ORTHO05D005873 3.7e-31 138.7 101 67.3
Nitab4.5_0001450g0150 Nicotiana tabacum HOM05D004884 ORTHO05D005873 1.6e-26 123.2 86 69.8
Oeu024660.1 Olea europaea HOM05D004884 ORTHO05D005873 4.7e-26 121.7 64 90.6
Nitab4.5_0000620g0040 Nicotiana tabacum HOM05D004884 ORTHO05D005873 4.9e-23 111.7 70 80.0
Gohir.A06G098210 Gossypium hirsutum HOM05D004884 ORTHO05D005873 1.7e-20 103.2 63 77.8
Gohir.A13G076901 Gossypium hirsutum HOM05D004884 ORTHO05D005873 6.2e-18 94.7 82 61.0
Gohir.D01G156500 Gossypium hirsutum HOM05D004884 ORTHO05D005873 3.1e-17 92.4 50 86.0
Cre12.g561200 Chlamydomonas reinhardtii HOM05D004884 ORTHO05D005873 9.9e-16 87.4 106 39.6
DCAR_015322 Daucus carota HOM05D004884 ORTHO05D005873 1.9e-14 83.2 40 92.5
MCO11G456 Micromonas commoda HOM05D004884 ORTHO05D005873 1.7e-12 76.6 127 35.4
Nn8g39461 Nelumbo nucifera HOM05D004884 ORTHO05D005873 3.9e-12 75.5 45 75.6
PRCOL_00001860 Prasinoderma coloniale HOM05D004884 ORTHO05D005873 6.6e-12 74.7 103 36.9
Hund04518 Selenicereus undatus HOM05D004884 ORTHO05D005873 1.9e-11 73.2 42 78.6
TPR.G29435 Trifolium pratense HOM05D004884 ORTHO05D005873 8.9e-09 64.3 28 100.0
CAN.G185.10 Capsicum annuum HOM05D004884 ORTHO05D005873 3.4e-08 62.4 59 59.3


User provided reference genes

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