Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.15G006200 Glycine max HOM05D003361 ORTHO05D003760 3.5e-65 251.5 131 100.0
Glyma.13G367200 Glycine max HOM05D003361 ORTHO05D003760 2.9e-35 152.1 134 67.9
Lj3g0027196 Lotus japonicus HOM05D003361 ORTHO05D003760 2.0e-20 102.8 95 57.9
Ca_12515_v3 Cicer arietinum L. HOM05D003361 ORTHO05D003760 2.2e-19 99.4 122 49.2
arahy.Tifrunner.gnm1.ann1.TB3UR8 Arachis hypogaea HOM05D003361 ORTHO05D003760 2.9e-19 99.0 96 57.3
arahy.Tifrunner.gnm1.ann1.YII6YD Arachis hypogaea HOM05D003361 ORTHO05D003760 2.9e-19 99.0 96 57.3
Glyma.08G214500 Glycine max HOM05D003361 ORTHO05D003760 4.9e-19 98.2 102 56.9
Lj3g0011414 Lotus japonicus HOM05D003361 ORTHO05D003760 4.9e-19 98.2 102 54.9
RcHm_v2.0_Chr2g0134401 Rosa chinensis HOM05D003361 ORTHO05D003760 8.4e-19 97.4 97 56.7
VMungo0331G0010 Vigna mungo HOM05D003361 ORTHO05D003760 8.4e-19 97.4 102 55.9
FvH4_6g29180 Fragaria vesca HOM05D003361 ORTHO05D003760 1.1e-18 97.1 97 57.7
FAN02G1685 Fragaria x ananassa HOM05D003361 ORTHO05D003760 1.1e-18 97.1 97 57.7
FAN05G3872 Fragaria x ananassa HOM05D003361 ORTHO05D003760 1.1e-18 97.1 97 57.7
FAN09G2631 Fragaria x ananassa HOM05D003361 ORTHO05D003760 1.1e-18 97.1 97 57.7
FAN14G3167 Fragaria x ananassa HOM05D003361 ORTHO05D003760 1.1e-18 97.1 97 57.7
Lalb_Chr01g0012261 Lupinus albus HOM05D003361 ORTHO05D003760 1.4e-18 96.7 97 57.7
Glyma.07G028300 Glycine max HOM05D003361 ORTHO05D003760 1.9e-18 96.3 102 55.9
Psat7g257800 Pisum sativum HOM05D003361 ORTHO05D003760 2.5e-18 95.9 122 47.5
Lj4g0018391 Lotus japonicus HOM05D003361 ORTHO05D003760 4.2e-18 95.1 96 57.3
Medtr4g009873 Medicago truncatula HOM05D003361 ORTHO05D003760 5.5e-18 94.7 122 47.5
Haze_16605 Corylus avellana HOM05D003361 ORTHO05D003760 1.6e-17 93.2 97 54.6
Phvul.010G157600 Phaseolus vulgaris HOM05D003361 ORTHO05D003760 2.7e-17 92.4 102 53.9
arahy.Tifrunner.gnm1.ann1.JM4LQW Arachis hypogaea HOM05D003361 ORTHO05D003760 3.5e-17 92.0 102 53.9
arahy.Tifrunner.gnm1.ann1.MWAB5B Arachis hypogaea HOM05D003361 ORTHO05D003760 3.5e-17 92.0 102 53.9
TPR.G38632 Trifolium pratense HOM05D003361 ORTHO05D003760 3.5e-17 92.0 97 52.6
Gohir.D10G079000 Gossypium hirsutum HOM05D003361 ORTHO05D003760 4.6e-17 91.7 97 55.7
Gorai.011G085800 Gossypium raimondii HOM05D003361 ORTHO05D003760 4.6e-17 91.7 97 55.7
QL05p032608 Quercus lobata HOM05D003361 ORTHO05D003760 4.6e-17 91.7 96 53.1
GSVIVG01017472001 Vitis vinifera HOM05D003361 ORTHO05D003760 4.6e-17 91.7 97 53.6
Thecc.06G033100 Theobroma cacao HOM05D003361 ORTHO05D003760 6.0e-17 91.3 97 55.7
arahy.Tifrunner.gnm1.ann1.NFA80P Arachis hypogaea HOM05D003361 ORTHO05D003760 1.0e-16 90.5 102 52.9
CiPaw.01G250600 Carya illinoinensis HOM05D003361 ORTHO05D003760 1.3e-16 90.1 127 46.5
Psat0s571g0080 Pisum sativum HOM05D003361 ORTHO05D003760 1.3e-16 90.1 106 50.9
Prupe.3G092900 Prunus persica HOM05D003361 ORTHO05D003760 1.3e-16 90.1 95 55.8
Sopen03g036300 Solanum pennellii HOM05D003361 ORTHO05D003760 1.3e-16 90.1 97 53.6
TWI75G0489 Tripterygium wilfordii HOM05D003361 ORTHO05D003760 1.8e-16 89.7 97 50.5
Gohir.A10G072100 Gossypium hirsutum HOM05D003361 ORTHO05D003760 2.3e-16 89.4 97 54.6
Manes.14G119228 Manihot esculenta HOM05D003361 ORTHO05D003760 2.3e-16 89.4 96 49.0
TWI12G0888 Tripterygium wilfordii HOM05D003361 ORTHO05D003760 2.3e-16 89.4 97 49.5
Dinv36449 Davidia involucrata HOM05D003361 ORTHO05D003760 3.0e-16 89.0 95 53.7
Peaxi162Scf00332g00127 Petunia axillaris HOM05D003361 ORTHO05D003760 3.0e-16 89.0 97 53.6
Ciclev10025249m.g Citrus clementina HOM05D003361 ORTHO05D003760 5.1e-16 88.2 97 51.5
Gohir.A08G090300 Gossypium hirsutum HOM05D003361 ORTHO05D003760 5.1e-16 88.2 99 48.5
QL02p090717 Quercus lobata HOM05D003361 ORTHO05D003760 5.1e-16 88.2 97 50.5
COL.COLO4_11855 Corchorus olitorius HOM05D003361 ORTHO05D003760 6.7e-16 87.8 97 53.6
Duzib160G0541 Durio zibethinus HOM05D003361 ORTHO05D003760 6.7e-16 87.8 95 53.7
Hma1.2p1_0461F.1_g157700 Hydrangea macrophylla HOM05D003361 ORTHO05D003760 6.7e-16 87.8 98 51.0
TPR.G7990 Trifolium pratense HOM05D003361 ORTHO05D003760 8.7e-16 87.4 94 54.3
EL10Ac8g18785 Beta vulgaris HOM05D003361 ORTHO05D003760 1.1e-15 87.0 96 52.1
Rhsim12G0189300 Rhododendron simsii HOM05D003361 ORTHO05D003760 1.1e-15 87.0 97 50.5
TAR383G0111 Trochodendron aralioides HOM05D003361 ORTHO05D003760 1.1e-15 87.0 97 52.6
CSS0014218 Camellia sinensis var. sinensis HOM05D003361 ORTHO05D003760 1.5e-15 86.7 95 53.7
CANSAT56G3261 Cannabis sativa HOM05D003361 ORTHO05D003760 1.5e-15 86.7 97 51.5
CiPaw.02G158600 Carya illinoinensis HOM05D003361 ORTHO05D003760 1.5e-15 86.7 95 53.7
Dinv41445 Davidia involucrata HOM05D003361 ORTHO05D003760 1.5e-15 86.7 93 53.8
Sabra06G0044400 Salix brachista HOM05D003361 ORTHO05D003760 1.5e-15 86.7 95 53.7
Solyc03g117420.4 Solanum lycopersicum HOM05D003361 ORTHO05D003760 1.5e-15 86.7 97 52.6
Glyma.17G107400 Glycine max HOM05D003361 ORTHO05D003760 1.9e-15 86.3 96 53.1
Phvul.003G172400 Phaseolus vulgaris HOM05D003361 ORTHO05D003760 1.9e-15 86.3 96 55.2
Sp1g14030 Schrenkiella parvula HOM05D003361 ORTHO05D003760 1.9e-15 86.3 97 50.5
Hund00496 Selenicereus undatus HOM05D003361 ORTHO05D003760 1.9e-15 86.3 93 52.7
TAR626G1829 Trochodendron aralioides HOM05D003361 ORTHO05D003760 1.9e-15 86.3 97 52.6
Duzib235G0043 Durio zibethinus HOM05D003361 ORTHO05D003760 2.5e-15 85.9 97 52.6
Peaxi162Scf01694g00019 Petunia axillaris HOM05D003361 ORTHO05D003760 2.5e-15 85.9 100 48.0
Potri.006G061700 Populus trichocarpa HOM05D003361 ORTHO05D003760 2.5e-15 85.9 95 53.7
Atru.chr1.2849 Acer truncatum HOM05D003361 ORTHO05D003760 3.3e-15 85.5 94 53.2
Glyma.13G163500 Glycine max HOM05D003361 ORTHO05D003760 3.3e-15 85.5 96 53.1
Medtr4g116170 Medicago truncatula HOM05D003361 ORTHO05D003760 3.3e-15 85.5 94 53.2
TWI32G1011 Tripterygium wilfordii HOM05D003361 ORTHO05D003760 3.3e-15 85.5 96 51.0
vmacro16874 Vaccinium macrocarpon HOM05D003361 ORTHO05D003760 3.3e-15 85.5 97 49.5
Migut.I00738 Erythranthe guttata HOM05D003361 ORTHO05D003760 4.3e-15 85.1 95 50.5
Eucgr.J03087 Eucalyptus grandis HOM05D003361 ORTHO05D003760 4.3e-15 85.1 97 50.5
Thhalv10007169m.g Eutrema salsugineum HOM05D003361 ORTHO05D003760 4.3e-15 85.1 97 49.5
Ca_21637_v3 Cicer arietinum L. HOM05D003361 ORTHO05D003760 5.7e-15 84.7 123 44.7
Manes.04G108700 Manihot esculenta HOM05D003361 ORTHO05D003760 5.7e-15 84.7 97 51.5
Nn8g39646 Nelumbo nucifera HOM05D003361 ORTHO05D003760 5.7e-15 84.7 97 50.5
PGSC0003DMG400007912 Solanum tuberosum HOM05D003361 ORTHO05D003760 7.4e-15 84.3 100 48.0
Atru.chr7.2012 Acer truncatum HOM05D003361 ORTHO05D003760 9.6e-15 84.0 96 50.0
Actinidia15974 Actinidia chinensis HOM05D003361 ORTHO05D003760 9.6e-15 84.0 95 53.7
AT1G15740 Arabidopsis thaliana HOM05D003361 ORTHO05D003760 9.6e-15 84.0 97 49.5
MSTRG.22764 Avicennia marina HOM05D003361 ORTHO05D003760 9.6e-15 84.0 96 50.0
Cpa.g.sc46.67 Carica papaya HOM05D003361 ORTHO05D003760 9.6e-15 84.0 94 53.2
Dinv30637 Davidia involucrata HOM05D003361 ORTHO05D003760 9.6e-15 84.0 97 50.5
Lj9A497T71 Lonicera japonica HOM05D003361 ORTHO05D003760 1.3e-14 83.6 97 48.5
SGA_v2.0_scaffold37G14747 Striga asiatica HOM05D003361 ORTHO05D003760 1.3e-14 83.6 96 50.0
Thecc.09G137400 Theobroma cacao HOM05D003361 ORTHO05D003760 1.3e-14 83.6 99 49.5
HPP92_017331 Vanilla planifolia HOM05D003361 ORTHO05D003760 1.3e-14 83.6 97 52.6
arahy.Tifrunner.gnm1.ann1.H7Z4S8 Arachis hypogaea HOM05D003361 ORTHO05D003760 1.6e-14 83.2 96 50.0
arahy.Tifrunner.gnm1.ann1.T3C7Q8 Arachis hypogaea HOM05D003361 ORTHO05D003760 1.6e-14 83.2 96 50.0
COL.COLO4_33367 Corchorus olitorius HOM05D003361 ORTHO05D003760 1.6e-14 83.2 96 47.9
MD02G1018400 Malus domestica HOM05D003361 ORTHO05D003760 1.6e-14 83.2 96 52.1
GSVIVG01012857001 Vitis vinifera HOM05D003361 ORTHO05D003760 1.6e-14 83.2 96 50.0
Gohir.D08G101300 Gossypium hirsutum HOM05D003361 ORTHO05D003760 2.1e-14 82.8 99 47.5
Gorai.004G109300 Gossypium raimondii HOM05D003361 ORTHO05D003760 2.1e-14 82.8 99 47.5
HanXRQChr17g0570311 Helianthus annuus HOM05D003361 ORTHO05D003760 2.1e-14 82.8 97 51.5
Lalb_Chr12g0198401 Lupinus albus HOM05D003361 ORTHO05D003760 2.1e-14 82.8 93 53.8
MBI14_g24987_MAGBIO Magnolia biondii HOM05D003361 ORTHO05D003760 2.1e-14 82.8 97 49.5
Prupe.7G252400 Prunus persica HOM05D003361 ORTHO05D003760 2.1e-14 82.8 96 52.1
Solyc12g009870.2 Solanum lycopersicum HOM05D003361 ORTHO05D003760 2.1e-14 82.8 100 46.0
THA.LOC104812464 Tarenaya hassleriana HOM05D003361 ORTHO05D003760 2.1e-14 82.8 97 48.5
CAN.G407.25 Capsicum annuum HOM05D003361 ORTHO05D003760 2.8e-14 82.4 97 50.5
SalBow7G0810 Salvia bowleyana HOM05D003361 ORTHO05D003760 2.8e-14 82.4 97 47.4
SalBow7G3482 Salvia bowleyana HOM05D003361 ORTHO05D003760 2.8e-14 82.4 97 47.4
Sc08g0006030 Simmondsia chinensis HOM05D003361 ORTHO05D003760 2.8e-14 82.4 96 50.0
Lsat_1_v5_gn_4_88160 Lactuca sativa HOM05D003361 ORTHO05D003988 3.7e-14 82.0 94 51.1
MD15G1162400 Malus domestica HOM05D003361 ORTHO05D003760 3.7e-14 82.0 96 51.0
Zm00001eb247040 Zea mays HOM05D003361 ORTHO05D003760 3.7e-14 82.0 97 50.5
AUR62020008 Chenopodium quinoa HOM05D003361 ORTHO05D003760 4.8e-14 81.6 98 48.0
Manes.11G061100 Manihot esculenta HOM05D003361 ORTHO05D003760 4.8e-14 81.6 97 50.5
C05p13880 Brassica napus HOM05D003361 ORTHO05D003760 6.3e-14 81.3 97 50.5
BolC5t30122H Brassica oleracea HOM05D003361 ORTHO05D003760 6.3e-14 81.3 97 50.5
AUR62011226 Chenopodium quinoa HOM05D003361 ORTHO05D003760 6.3e-14 81.3 96 49.0
Lsat_1_v5_gn_5_8861 Lactuca sativa HOM05D003361 ORTHO05D003760 6.3e-14 81.3 93 52.7
BcaC05g25516 Brassica carinata HOM05D003361 ORTHO05D003760 8.2e-14 80.9 97 49.5
CsaV3_7G032160 Cucumis sativus L. HOM05D003361 ORTHO05D003760 8.2e-14 80.9 97 48.5
ECA246G4877 Erigeron canadensis HOM05D003361 ORTHO05D003760 8.2e-14 80.9 93 51.6
Oeu029903.1 Olea europaea HOM05D003361 ORTHO05D003760 8.2e-14 80.9 99 48.5
Hund21595 Selenicereus undatus HOM05D003361 ORTHO05D003760 8.2e-14 80.9 96 50.0
Carub.0001s1551 Capsella rubella HOM05D003361 ORTHO05D003760 1.4e-13 80.1 97 47.4
ClCG09G003110 Citrullus lanatus HOM05D003361 ORTHO05D003760 1.4e-13 80.1 97 47.4
A06p11730 Brassica napus HOM05D003361 ORTHO05D003760 1.8e-13 79.7 97 49.5
BraA06t24343Z Brassica rapa HOM05D003361 ORTHO05D003760 1.8e-13 79.7 97 49.5
CAN.G1281.4 Capsicum annuum HOM05D003361 ORTHO05D003760 1.8e-13 79.7 99 50.5
Nn2g12188 Nelumbo nucifera HOM05D003361 ORTHO05D003760 1.8e-13 79.7 96 51.0
Aa31LG7G360 Aethionema arabicum HOM05D003361 ORTHO05D003760 2.4e-13 79.3 97 48.5
CANSAT11G0288 Cannabis sativa HOM05D003361 ORTHO05D003760 2.4e-13 79.3 96 50.0
Cc04_g04660 Coffea canephora HOM05D003361 ORTHO05D003760 4.1e-13 78.6 99 46.5
MELO3C023445.2 Cucumis melo HOM05D003361 ORTHO05D003760 4.1e-13 78.6 97 47.4
Nitab4.5_0001017g0020 Nicotiana tabacum HOM05D003361 ORTHO05D003760 4.1e-13 78.6 95 50.5
Nitab4.5_0002322g0060 Nicotiana tabacum HOM05D003361 ORTHO05D003760 4.1e-13 78.6 95 50.5
AL1G27850 Arabidopsis lyrata HOM05D003361 ORTHO05D003760 5.3e-13 78.2 97 47.4
FvH4_1g02020 Fragaria vesca HOM05D003361 ORTHO05D003760 5.3e-13 78.2 96 47.9
RcHm_v2.0_Chr2g0087081 Rosa chinensis HOM05D003361 ORTHO05D003760 5.3e-13 78.2 96 51.0
THA.LOC104808198 Tarenaya hassleriana HOM05D003361 ORTHO05D003760 5.3e-13 78.2 97 46.4
CARHR016230 Cardamine hirsuta HOM05D003361 ORTHO05D003760 6.9e-13 77.8 97 46.4
FAN28G0525 Fragaria x ananassa HOM05D003361 ORTHO05D003760 6.9e-13 77.8 126 42.1
MSTRG.11160 Avicennia marina HOM05D003361 ORTHO05D003760 9.0e-13 77.4 97 47.4
FAN19G1251 Fragaria x ananassa HOM05D002026 ORTHO05D002291 9.0e-13 77.4 96 46.9
Aqoxy7G02456 Aquilegia oxysepala HOM05D003361 ORTHO05D003760 1.2e-12 77.0 101 45.5
Os02g0613200 Oryza sativa ssp. japonica HOM05D003361 ORTHO05D003760 1.2e-12 77.0 97 48.5
Nitab4.5_0002286g0090 Nicotiana tabacum HOM05D003361 ORTHO05D003760 1.5e-12 76.6 99 47.5
PGR031G1162 Punica granatum HOM05D003361 ORTHO05D003760 4.5e-12 75.1 97 46.4
Cc06_g07660 Coffea canephora HOM05D003361 ORTHO05D003760 5.9e-12 74.7 98 44.9
Nitab4.5_0002329g0140 Nicotiana tabacum HOM05D003361 ORTHO05D003760 1.0e-11 73.9 106 41.5
Zm00001eb078100 Zea mays HOM05D003361 ORTHO05D003760 1.0e-11 73.9 98 45.9
Nitab4.5_0008536g0030 Nicotiana tabacum HOM05D003361 ORTHO05D003760 1.3e-11 73.6 96 44.8
Peaxi162Scf00088g00618 Petunia axillaris HOM05D003361 ORTHO05D003760 1.3e-11 73.6 100 44.0
Psat1g109200 Pisum sativum HOM05D003361 ORTHO05D003760 1.3e-11 73.6 106 45.3
Sed0016861 Sechium edule HOM05D003361 ORTHO05D003760 1.7e-11 73.2 97 44.3
Solyc07g007420.3 Solanum lycopersicum HOM05D003361 ORTHO05D003760 1.7e-11 73.2 121 41.3
Sopen07g003470 Solanum pennellii HOM05D003361 ORTHO05D003760 1.7e-11 73.2 121 41.3
Ah.09g224100 Amaranthus hybridus HOM05D003361 ORTHO05D003760 2.9e-11 72.4 96 45.8
CDE05G0968 Ceratophyllum demersum HOM05D003361 ORTHO05D003760 6.5e-11 71.2 97 46.4
SEGI_28212 Sequoiadendron giganteum HOM05D003361 ORTHO05D003760 6.5e-11 71.2 96 41.7
Os04g0503500 Oryza sativa ssp. japonica HOM05D003361 ORTHO05D003760 1.4e-10 70.1 97 45.4
PGSC0003DMG400030688 Solanum tuberosum HOM05D003361 ORTHO05D003760 1.4e-10 70.1 99 44.4
HanXRQChr09g0274781 Helianthus annuus HOM05D003361 ORTHO05D003760 2.5e-10 69.3 94 43.6
MD17G1217000 Malus domestica HOM05D003361 ORTHO05D003760 4.2e-10 68.6 72 55.6
ATR0767G175 Amborella trichopoda HOM05D003361 ORTHO05D003760 5.5e-10 68.2 102 41.2
DCAR_025527 Daucus carota HOM05D003361 ORTHO05D003760 7.2e-10 67.8 97 41.2
Duzib150G0304 Durio zibethinus HOM05D003361 ORTHO05D003760 6.1e-09 64.7 72 50.0
Nitab4.5_0009284g0020 Nicotiana tabacum HOM05D003361 ORTHO05D003760 6.1e-09 64.7 85 48.2
Pp3c4_3150 Physcomitrium patens HOM05D003361 ORTHO05D003760 7.9e-09 64.3 95 40.0
SHI02098 Sapria himalayana HOM05D003361 ORTHO05D003760 7.9e-09 64.3 95 43.2
Duzib187G1093 Durio zibethinus HOM05D003361 ORTHO05D003760 1.3e-08 63.5 72 50.0
Sed0010441 Sechium edule HOM05D003361 ORTHO05D003760 3.9e-08 62.0 100 43.0
Mapoly0032s0095 Marchantia polymorpha HOM05D003361 ORTHO05D003760 6.7e-08 61.2 95 40.0
PSO017G3211 Papaver somniferum HOM05D003361 ORTHO05D003760 1.1e-07 60.5 99 38.4
PSO170G6803 Papaver somniferum HOM05D003361 ORTHO05D003760 1.9e-07 59.7 99 38.4
unitig_699.g19089 Utricularia gibba HOM05D003361 ORTHO05D003760 6.3e-06 54.7 63 49.2


User provided reference genes

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