Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.14G223400 Glycine max HOM05D006313 ORTHO05D007853 0.0e+00 1663.7 803 100.0
VMungo0647G1480 Vigna mungo HOM05D006313 ORTHO05D007853 0.0e+00 1552.7 803 92.3
Phvul.001G001100 Phaseolus vulgaris HOM05D006313 ORTHO05D007853 0.0e+00 1545.4 803 92.2
Medtr5g066730 Medicago truncatula HOM05D006313 ORTHO05D007853 0.0e+00 1441.0 803 85.4
Lj5g0009044 Lotus japonicus HOM05D006313 ORTHO05D007853 0.0e+00 1379.8 806 82.9
Ca_25243_v3 Cicer arietinum L. HOM05D006313 ORTHO05D007853 0.0e+00 1369.8 803 82.6
Lalb_Chr01g0008341 Lupinus albus HOM05D006313 ORTHO05D007853 0.0e+00 1352.0 803 81.1
arahy.Tifrunner.gnm1.ann1.N9IWSS Arachis hypogaea HOM05D006313 ORTHO05D007853 0.0e+00 1345.5 799 81.6
arahy.Tifrunner.gnm1.ann1.TM2XQH Arachis hypogaea HOM05D006313 ORTHO05D007853 0.0e+00 1345.5 799 81.6
Psat2g064920 Pisum sativum HOM05D006313 ORTHO05D007853 0.0e+00 1274.6 730 84.4
CiPaw.07G138200 Carya illinoinensis HOM05D006313 ORTHO05D007853 0.0e+00 1206.0 801 72.3
QL02p014292 Quercus lobata HOM05D006313 ORTHO05D007853 0.0e+00 1205.7 801 72.0
Dinv31948 Davidia involucrata HOM05D006313 ORTHO05D007853 0.0e+00 1192.2 802 70.2
Prupe.1G353800 Prunus persica HOM05D006313 ORTHO05D007853 0.0e+00 1183.7 801 71.8
GSVIVG01013365001 Vitis vinifera HOM05D006313 ORTHO05D007853 0.0e+00 1183.3 802 70.7
MD08G1002100 Malus domestica HOM05D006313 ORTHO05D007853 0.0e+00 1166.8 801 70.9
Atru.chr13.141 Acer truncatum HOM05D006313 ORTHO05D007853 0.0e+00 1166.0 804 69.9
RcHm_v2.0_Chr6g0304381 Rosa chinensis HOM05D006313 ORTHO05D007853 0.0e+00 1162.5 806 70.1
FAN15G3120 Fragaria x ananassa HOM05D006313 ORTHO05D007853 0.0e+00 1158.3 802 69.7
TWI12G0830 Tripterygium wilfordii HOM05D006313 ORTHO05D007853 0.0e+00 1151.3 802 68.6
Cfa014086 Carpinus fangiana HOM05D006313 ORTHO05D007853 0.0e+00 1149.4 801 70.4
Potri.002G010100 Populus trichocarpa HOM05D006313 ORTHO05D007853 0.0e+00 1149.4 803 68.5
Sabra02G0007500 Salix brachista HOM05D006313 ORTHO05D007853 0.0e+00 1144.8 802 68.6
Hma1.2p1_0507F.1_g168580 Hydrangea macrophylla HOM05D006313 ORTHO05D007853 0.0e+00 1139.8 818 66.6
Manes.18G004800 Manihot esculenta HOM05D006313 ORTHO05D007853 0.0e+00 1139.8 802 68.1
Haze_22787 Corylus avellana HOM05D006313 ORTHO05D007853 0.0e+00 1138.3 883 64.6
FAN20G0447 Fragaria x ananassa HOM05D006313 ORTHO05D007853 0.0e+00 1134.0 837 66.3
Rhsim07G0255100 Rhododendron simsii HOM05D006313 ORTHO05D007853 0.0e+00 1134.0 804 67.0
TAR381G0755 Trochodendron aralioides HOM05D006313 ORTHO05D007853 0.0e+00 1130.9 804 68.2
Potri.005G251300 Populus trichocarpa HOM05D006313 ORTHO05D007853 0.0e+00 1127.9 802 68.6
Sabra05G0194600 Salix brachista HOM05D006313 ORTHO05D007853 0.0e+00 1120.5 802 67.3
Ciclev10003249m.g Citrus clementina HOM05D006313 ORTHO05D007853 0.0e+00 1120.1 813 66.5
Thecc.08G059800 Theobroma cacao HOM05D006313 ORTHO05D007853 0.0e+00 1120.1 802 67.2
MELO3C017021.2 Cucumis melo HOM05D006313 ORTHO05D007853 0.0e+00 1119.4 803 67.7
CANSAT25G3184 Cannabis sativa HOM05D006313 ORTHO05D007853 0.0e+00 1118.2 818 67.1
PGR083G2847 Punica granatum HOM05D006313 ORTHO05D007853 0.0e+00 1113.6 803 66.4
CSS0043965 Camellia sinensis var. sinensis HOM05D006313 ORTHO05D007853 0.0e+00 1112.8 805 67.0
CsaV3_4G037230 Cucumis sativus L. HOM05D006313 ORTHO05D007853 0.0e+00 1112.8 803 67.4
Gohir.A05G179200 Gossypium hirsutum HOM05D006313 ORTHO05D007853 0.0e+00 1112.1 807 66.7
Gorai.009G187700 Gossypium raimondii HOM05D006313 ORTHO05D007853 0.0e+00 1110.9 802 66.6
Gohir.D05G182400 Gossypium hirsutum HOM05D006313 ORTHO05D007853 0.0e+00 1105.9 807 66.3
vmacro04407 Vaccinium macrocarpon HOM05D006313 ORTHO05D007853 0.0e+00 1102.8 838 63.6
Oeu000694.1 Olea europaea HOM05D006313 ORTHO05D007853 0.0e+00 1100.5 803 66.3
Duzib093G1521 Durio zibethinus HOM05D006313 ORTHO05D007853 0.0e+00 1095.5 801 66.3
MBI08_g24269_MAGBIO Magnolia biondii HOM05D006313 ORTHO05D007853 0.0e+00 1094.0 802 66.2
FAN27G1942 Fragaria x ananassa HOM05D006313 ORTHO05D007853 0.0e+00 1088.2 833 64.9
Eucgr.F01772 Eucalyptus grandis HOM05D006313 ORTHO05D007853 0.0e+00 1082.4 800 65.1
Cc10_g00630 Coffea canephora HOM05D006313 ORTHO05D007853 0.0e+00 1080.9 802 64.3
Migut.N02954 Erythranthe guttata HOM05D006313 ORTHO05D007853 0.0e+00 1080.5 801 64.8
EL10Ac1g01951 Beta vulgaris HOM05D006313 ORTHO05D007853 0.0e+00 1078.5 814 64.0
PSO210G6994 Papaver somniferum HOM05D006313 ORTHO05D007853 2.2e-311 1072.0 802 63.7
Hund05111 Selenicereus undatus HOM05D006313 ORTHO05D007853 2.2e-311 1072.0 844 61.1
Aqoxy5G01036 Aquilegia oxysepala HOM05D006313 ORTHO05D007853 6.6e-311 1070.5 804 63.6
Nn5g30955 Nelumbo nucifera HOM05D006313 ORTHO05D007853 9.2e-310 1066.6 775 66.2
PSO170G0983 Papaver somniferum HOM05D006313 ORTHO05D007853 2.1e-309 1065.4 802 63.2
Lsat_1_v5_gn_9_45201 Lactuca sativa HOM05D006313 ORTHO05D007853 2.5e-307 1058.5 805 63.7
Sopen04g036010 Solanum pennellii HOM05D006313 ORTHO05D007853 5.6e-307 1057.4 806 63.0
Actinidia37918 Actinidia chinensis HOM05D006313 ORTHO05D007853 4.8e-306 1054.3 755 66.9
CAN.G311.119 Capsicum annuum HOM05D006313 ORTHO05D007853 6.2e-306 1053.9 801 62.3
SGA_v2.0_scaffold54G19673 Striga asiatica HOM05D006313 ORTHO05D007853 1.1e-305 1053.1 801 62.8
PGSC0003DMG400009982 Solanum tuberosum HOM05D006313 ORTHO05D007853 9.0e-305 1050.0 806 62.7
HanXRQChr15g0492461 Helianthus annuus HOM05D006313 ORTHO05D007853 7.6e-304 1047.0 803 63.5
DCAR_013918 Daucus carota HOM05D006313 ORTHO05D007853 1.9e-302 1042.3 833 59.9
Nitab4.5_0000588g0050 Nicotiana tabacum HOM05D006313 ORTHO05D007853 3.5e-301 1038.1 850 59.3
Peaxi162Scf00711g00530 Petunia axillaris HOM05D006313 ORTHO05D007853 4.6e-301 1037.7 801 62.7
AUR62040798 Chenopodium quinoa HOM05D006313 ORTHO05D007853 1.3e-300 1036.2 803 62.1
ECA232G0012 Erigeron canadensis HOM05D006313 ORTHO05D007853 1.5e-299 1032.7 804 62.9
TPR.G38702 Trifolium pratense HOM05D006313 ORTHO05D007853 1.7e-295 1019.2 609 82.4
Thhalv10016264m.g Eutrema salsugineum HOM05D006313 ORTHO05D007853 7.9e-293 1010.4 802 61.3
THA.LOC104825426 Tarenaya hassleriana HOM05D006313 ORTHO05D007853 1.3e-292 1009.6 802 61.6
ATR0661G251 Amborella trichopoda HOM05D006313 ORTHO05D007853 1.8e-292 1009.2 804 60.3
Aa31LG5G6170 Aethionema arabicum HOM05D006313 ORTHO05D007853 5.1e-292 1007.7 802 61.0
AL4G25490 Arabidopsis lyrata HOM05D006313 ORTHO05D007853 1.3e-290 1003.0 803 60.6
AT2G30600 Arabidopsis thaliana HOM05D006313 ORTHO05D007853 1.6e-290 1002.7 803 60.6
C04p59650 Brassica napus HOM05D006313 ORTHO05D007853 1.7e-287 992.6 802 61.0
A04p23350 Brassica napus HOM05D006313 ORTHO05D007853 4.9e-287 991.1 802 60.5
Sp4g13150 Schrenkiella parvula HOM05D006313 ORTHO05D007853 3.2e-286 988.4 803 59.9
Lj4A10G75 Lonicera japonica HOM05D006313 ORTHO05D007853 9.3e-286 986.9 802 61.8
Carub.0004s1176 Capsella rubella HOM05D006313 ORTHO05D007853 3.9e-284 981.5 803 59.4
BraA04t17863Z Brassica rapa HOM05D006313 ORTHO05D007853 9.0e-281 970.3 845 57.4
BolC4t27473H Brassica oleracea HOM05D006313 ORTHO05D007853 2.6e-280 968.8 853 57.3
CDE04G1532 Ceratophyllum demersum HOM05D006313 ORTHO05D007853 1.3e-279 966.5 803 58.0
HPP92_022696 Vanilla planifolia HOM05D006313 ORTHO05D007853 3.8e-279 964.9 803 58.3
SHI07994 Sapria himalayana HOM05D006313 ORTHO05D007853 1.0e-276 956.8 801 59.4
CARHR124070 Cardamine hirsuta HOM05D006313 ORTHO05D007853 5.1e-276 954.5 789 59.2
Sed0015221 Sechium edule HOM05D006313 ORTHO05D007853 2.2e-271 939.1 715 66.2
BcaB06g28382 Brassica carinata HOM05D006313 ORTHO05D007853 8.2e-266 920.6 805 57.0
Cpa.g.sc26.189 Carica papaya HOM05D006313 ORTHO05D007853 1.0e-263 913.7 710 64.6
Hma1.2p1_0507F.1_g168570 Hydrangea macrophylla HOM05D006313 ORTHO05D007853 1.5e-238 830.1 598 67.1
FvH4_2g37320 Fragaria vesca HOM05D006313 ORTHO05D007853 9.8e-235 817.4 609 66.7
CDE02G1829 Ceratophyllum demersum HOM05D006313 ORTHO05D007853 1.7e-231 806.6 800 51.8
COL.COLO4_05223 Corchorus olitorius HOM05D006313 ORTHO05D007853 1.3e-223 780.4 609 64.5
unitig_22.g5883 Utricularia gibba HOM05D006313 ORTHO05D007853 1.5e-211 740.3 617 58.8
AagrBONN_evm.TU.Sc2ySwM_228.121 Anthoceros agrestis HOM05D006313 ORTHO05D007853 1.3e-207 727.2 826 45.8
Pp3c3_5520 Physcomitrium patens HOM05D006313 ORTHO05D007853 3.3e-198 696.0 830 45.5
SMO361G0777 Selaginella moellendorffii HOM05D006313 ORTHO05D007853 1.0e-191 674.5 821 43.8
AUR62036859 Chenopodium quinoa HOM05D006313 ORTHO05D007853 8.7e-167 591.7 534 55.1
Solyc04g082420.3 Solanum lycopersicum HOM05D006313 ORTHO05D007853 4.1e-156 556.2 459 60.3
Sc02g0009120 Simmondsia chinensis HOM05D006313 ORTHO05D007853 4.5e-155 552.7 453 61.8
Mapoly0001s0491 Marchantia polymorpha HOM05D006313 ORTHO05D007853 5.2e-143 512.7 583 45.3
Manes.18G005201 Manihot esculenta HOM05D006313 ORTHO05D007853 1.3e-130 471.5 374 62.3
Os05g0345500 Oryza sativa ssp. japonica HOM05D006313 ORTHO05D007853 1.9e-129 467.6 453 52.3
Zm00001eb379580 Zea mays HOM05D006313 ORTHO05D007853 4.2e-129 466.5 447 51.2
Sc02g0009110 Simmondsia chinensis HOM05D006313 ORTHO05D007853 1.4e-127 461.5 314 66.9
CSS0049724 Camellia sinensis var. sinensis HOM05D006313 ORTHO05D007853 1.1e-124 451.8 403 58.6
SEGI_26691 Sequoiadendron giganteum HOM05D006313 ORTHO05D007853 8.6e-122 442.2 468 48.7
TPR.G21513 Trifolium pratense HOM05D006313 ORTHO05D007853 6.1e-112 409.5 195 90.3
Cfa012651 Carpinus fangiana HOM05D006313 ORTHO05D007853 5.7e-110 402.9 342 63.5
CSS0044355 Camellia sinensis var. sinensis HOM05D006313 ORTHO05D007853 2.6e-78 297.7 308 52.6
ClCG11G018700 Citrullus lanatus HOM05D006313 ORTHO05D007853 1.8e-71 275.0 148 80.4
SEGI_09974 Sequoiadendron giganteum HOM05D006313 ORTHO05D007853 1.2e-70 272.3 260 53.5
CBR_g18852 Chara braunii HOM05D006313 ORTHO05D007853 1.5e-70 271.9 529 35.5
Sabra05G0194400 Salix brachista HOM05D006313 ORTHO05D007853 3.8e-69 267.3 237 58.2
Sabra05G0194300 Salix brachista HOM05D006313 ORTHO05D007853 8.7e-66 256.1 147 76.2
Cpa.g.sc801.5 Carica papaya HOM05D006313 ORTHO05D007853 4.8e-56 223.8 121 73.6
Cre03.g158850 Chlamydomonas reinhardtii HOM05D006313 ORTHO05D007853 1.9e-52 211.8 195 49.7
CBR_g6381 Chara braunii HOM05D006313 ORTHO05D007853 1.5e-49 202.2 145 57.9
PRCOL_00004404 Prasinoderma coloniale HOM05D006313 ORTHO05D007853 6.9e-47 193.4 854 24.7
SEGI_14381 Sequoiadendron giganteum HOM05D006313 ORTHO05D007853 1.2e-43 182.6 191 51.8
SEGI_13417 Sequoiadendron giganteum HOM05D006313 ORTHO05D007853 1.5e-38 165.6 93 73.1
unitig_22.g5882 Utricularia gibba HOM05D006313 ORTHO05D007853 1.5e-30 139.0 84 70.2
arahy.Tifrunner.gnm1.ann1.9M02QF Arachis hypogaea HOM05D000431 ORTHO05D007853 1.4e-23 115.9 78 66.7
COL.COLO4_05222 Corchorus olitorius HOM05D006313 ORTHO05D007853 1.0e-21 109.8 52 82.7
SEGI_38873 Sequoiadendron giganteum HOM05D006313 ORTHO05D007853 2.2e-16 92.0 76 56.6
MCO09G352 Micromonas commoda HOM05D006313 ORTHO05D007853 3.4e-09 68.2 190 29.5
Zm00001eb305500 Zea mays HOM05D000563 ORTHO05D000536 2.8e-08 65.1 152 31.6
DCAR_011734 Daucus carota HOM05D000563 ORTHO05D000536 3.7e-08 64.7 130 35.4
Zm00001eb418740 Zea mays HOM05D000563 ORTHO05D442000 3.7e-08 64.7 148 33.1
BolC3t20551H Brassica oleracea HOM05D006313 ORTHO05D007853 1.4e-07 62.8 52 55.8
Sed0005870 Sechium edule HOM05D001597 ORTHO05D001512 1.4e-07 62.8 281 26.7
Os04g0625600 Oryza sativa ssp. japonica HOM05D000563 ORTHO05D000536 9.1e-07 60.1 132 31.8
Os08g0516550 Oryza sativa ssp. japonica HOM05D000563 ORTHO05D000536 1.2e-06 59.7 126 33.3
Os08g0523700 Oryza sativa ssp. japonica HOM05D000563 ORTHO05D000536 1.6e-06 59.3 140 31.4
PSO339G0932 Papaver somniferum HOM05D000563 ORTHO05D000536 1.6e-06 59.3 158 30.4
HPP92_019701 Vanilla planifolia HOM05D002322 ORTHO05D002536 1.6e-06 59.3 165 31.5
RcHm_v2.0_Chr3g0496191 Rosa chinensis HOM05D000563 ORTHO05D000536 2.0e-06 58.9 123 34.1
FAN26G3181 Fragaria x ananassa HOM05D000563 ORTHO05D000536 3.5e-06 58.2 124 33.1
Atru.chr5.607 Acer truncatum HOM05D001597 ORTHO05D001512 4.5e-06 57.8 279 25.8
Thhalv10001385m.g Eutrema salsugineum HOM05D001597 ORTHO05D001512 5.9e-06 57.4 281 25.6
Pp3c17_930 Physcomitrium patens HOM05D000563 ORTHO05D000536 5.9e-06 57.4 134 29.9
Pp3c17_931 Physcomitrium patens HOM05D000563 ORTHO05D000536 5.9e-06 57.4 134 29.9
Prupe.2G260000 Prunus persica HOM05D002006 ORTHO05D002128 5.9e-06 57.4 149 28.2
FAN19G3010 Fragaria x ananassa HOM05D000563 ORTHO05D000536 7.7e-06 57.0 124 33.1
FAN28G2307 Fragaria x ananassa HOM05D000563 ORTHO05D000536 7.7e-06 57.0 124 33.1
Pp3c12_280 Physcomitrium patens HOM05D000563 ORTHO05D000536 7.7e-06 57.0 154 31.2
Sp4g28310 Schrenkiella parvula HOM05D001597 ORTHO05D001512 7.7e-06 57.0 281 26.7
TWI23G0118 Tripterygium wilfordii HOM05D001597 ORTHO05D001512 7.7e-06 57.0 282 27.0


User provided reference genes

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