Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.14G220400 Glycine max HOM05D013708 ORTHO05D003197 5.5e-156 555.1 488 100.0
Glyma.17G259300 Glycine max HOM05D013708 ORTHO05D003197 1.7e-88 330.9 532 73.3
VMungo0647G0628 Vigna mungo HOM05D013708 ORTHO05D003197 2.3e-69 267.3 490 57.1
Phvul.001G004700 Phaseolus vulgaris HOM05D013708 ORTHO05D003197 5.5e-63 246.1 529 53.7
Lj5g0025072 Lotus japonicus HOM05D004095 ORTHO05D003197 3.1e-34 150.6 436 31.7
TPR.G26385 Trifolium pratense HOM05D013708 ORTHO05D003197 1.2e-30 138.7 436 48.6
Ca_13423_v3 Cicer arietinum L. HOM05D013708 ORTHO05D003197 6.5e-24 116.3 435 28.0
Ca_13439_v3 Cicer arietinum L. HOM05D013708 ORTHO05D003197 6.5e-24 116.3 435 28.0
Psat6g003360 Pisum sativum HOM05D013708 ORTHO05D003197 1.2e-22 112.1 466 45.9
Medtr1g025620 Medicago truncatula HOM05D013708 ORTHO05D003197 2.1e-22 111.3 437 34.6
TPR.G32858 Trifolium pratense HOM05D013708 ORTHO05D003197 1.2e-20 105.5 80 61.2
Medtr1g034990 Medicago truncatula HOM05D013708 ORTHO05D003197 1.7e-19 101.7 427 27.4
arahy.Tifrunner.gnm1.ann1.I59WU7 Arachis hypogaea HOM05D004095 ORTHO05D003197 4.0e-13 80.5 81 55.6
arahy.Tifrunner.gnm1.ann1.VNIF6J Arachis hypogaea HOM05D004095 ORTHO05D003197 4.0e-13 80.5 81 55.6
Lalb_Chr08g0246191 Lupinus albus HOM05D004095 ORTHO05D003197 1.2e-12 79.0 82 56.1
TWI12G1115 Tripterygium wilfordii HOM05D004095 ORTHO05D003197 4.1e-10 70.5 138 37.0
SalBow7G2790 Salvia bowleyana HOM05D004095 ORTHO05D003197 5.4e-10 70.1 84 45.2
CiPaw.07G146700 Carya illinoinensis HOM05D004095 ORTHO05D003197 7.0e-10 69.7 83 39.8
CAN.G311.49 Capsicum annuum HOM05D004095 ORTHO05D003197 2.3e-08 64.7 82 43.9
PGR031G2559 Punica granatum HOM05D004095 ORTHO05D003197 2.3e-08 64.7 82 40.2
Cpa.g.sc26.299 Carica papaya HOM05D004095 ORTHO05D003197 5.0e-08 63.5 83 34.9
Sabra02G0015500 Salix brachista HOM05D004095 ORTHO05D003197 5.0e-08 63.5 83 44.6
CSS0006390 Camellia sinensis var. sinensis HOM05D004095 ORTHO05D003197 8.6e-08 62.8 154 34.4
Potri.002G019200 Populus trichocarpa HOM05D004095 ORTHO05D003197 8.6e-08 62.8 82 41.5
Manes.18G010907 Manihot esculenta HOM05D004095 ORTHO05D003197 1.1e-07 62.4 84 40.5
Nn6g31993 Nelumbo nucifera HOM05D004095 ORTHO05D003197 1.1e-07 62.4 80 45.0
Aqoxy5G01820 Aquilegia oxysepala HOM05D004095 ORTHO05D003197 1.5e-07 62.0 123 42.3
Aa31LG7G4540 Aethionema arabicum HOM05D008819 ORTHO05D003197 2.5e-07 61.2 82 41.5
CANSAT25G2395 Cannabis sativa HOM05D004095 ORTHO05D003197 2.5e-07 61.2 84 34.5
Solyc04g081730.3 Solanum lycopersicum HOM05D004095 ORTHO05D003197 2.5e-07 61.2 83 44.6
BcaC08g47079 Brassica carinata HOM05D008819 ORTHO05D003197 3.3e-07 60.8 59 52.5
CSS0032179 Camellia sinensis var. sinensis HOM05D004095 ORTHO05D003197 3.3e-07 60.8 151 33.1
TAR381G0731 Trochodendron aralioides HOM05D004095 ORTHO05D003197 3.3e-07 60.8 75 48.0
Hma1.2p1_0023F.1_g015650 Hydrangea macrophylla HOM05D004095 ORTHO05D003197 4.3e-07 60.5 68 51.5
QL02p012206 Quercus lobata HOM05D004095 ORTHO05D003197 5.6e-07 60.1 123 40.7
Sabra05G0187500 Salix brachista HOM05D004095 ORTHO05D003197 5.6e-07 60.1 82 41.5
Actinidia15439 Actinidia chinensis HOM05D004095 ORTHO05D003197 7.3e-07 59.7 116 37.9
MSTRG.25264 Avicennia marina HOM05D004095 ORTHO05D003197 7.3e-07 59.7 86 41.9
A07p41430 Brassica napus HOM05D008819 ORTHO05D003197 7.3e-07 59.7 54 50.0
Ciclev10002009m.g Citrus clementina HOM05D004095 ORTHO05D003197 7.3e-07 59.7 79 39.2
PGSC0003DMG400009946 Solanum tuberosum HOM05D004095 ORTHO05D003197 7.3e-07 59.7 83 44.6
BcaC08g47318 Brassica carinata HOM05D008819 ORTHO05D003197 1.2e-06 58.9 55 52.7
BolC6t40021H Brassica oleracea HOM05D008819 ORTHO05D003197 1.2e-06 58.9 55 52.7
Haze_03728 Corylus avellana HOM05D004095 ORTHO05D003197 1.2e-06 58.9 84 34.5
Peaxi162Scf00860g00422 Petunia axillaris HOM05D004095 ORTHO05D003197 1.2e-06 58.9 79 39.2
Sopen04g035350 Solanum pennellii HOM05D004095 ORTHO05D003197 1.2e-06 58.9 82 43.9
TWI36G1615 Tripterygium wilfordii HOM05D004095 ORTHO05D003197 1.2e-06 58.9 150 30.7
Haze_22667 Corylus avellana HOM05D004095 ORTHO05D003197 2.8e-06 57.8 83 38.6
Duzib093G1456 Durio zibethinus HOM05D004095 ORTHO05D003197 2.8e-06 57.8 85 41.2
Nitab4.5_0006505g0050 Nicotiana tabacum HOM05D004095 ORTHO05D003197 3.6e-06 57.4 85 41.2
Thecc.08G047900 Theobroma cacao HOM05D004095 ORTHO05D003197 4.7e-06 57.0 77 41.6
Cfa007004 Carpinus fangiana HOM05D004095 ORTHO05D003197 8.0e-06 56.2 66 36.4
unitig_749.g13901 Utricularia gibba HOM05D004095 ORTHO05D003197 8.0e-06 56.2 56 50.0


User provided reference genes

Program Settings