Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.14G219000 Glycine max HOM05D007378 ORTHO05D007577 0.0e+00 1342.4 687 100.0
Glyma.17G258000 Glycine max HOM05D007378 ORTHO05D007577 0.0e+00 1117.8 701 85.0
VMungo0647G1459 Vigna mungo HOM05D007378 ORTHO05D007577 9.2e-266 920.2 712 71.9
Phvul.001G006800 Phaseolus vulgaris HOM05D007378 ORTHO05D007577 3.3e-263 911.8 703 72.1
Lj5g0002996 Lotus japonicus HOM05D007378 ORTHO05D007577 1.6e-185 653.7 716 57.7
arahy.Tifrunner.gnm1.ann1.WP2VUZ Arachis hypogaea HOM05D007378 ORTHO05D007577 5.5e-178 628.6 733 55.3
arahy.Tifrunner.gnm1.ann1.KUKA7T Arachis hypogaea HOM05D007378 ORTHO05D007577 1.6e-177 627.1 732 54.9
Ca_13427_v3 Cicer arietinum L. HOM05D007378 ORTHO05D007577 6.8e-168 595.1 700 54.0
Medtr1g025180 Medicago truncatula HOM05D007378 ORTHO05D007577 7.5e-167 591.7 680 54.0
TPR.G26373 Trifolium pratense HOM05D007378 ORTHO05D007577 1.1e-149 534.6 682 50.0
Glyma.04G024500 Glycine max HOM05D007378 ORTHO05D007577 2.1e-145 520.4 661 53.3
Lalb_Chr11g0061931 Lupinus albus HOM05D007378 ORTHO05D007577 2.8e-145 520.0 672 50.7
Psat6g003040 Pisum sativum HOM05D007378 ORTHO05D007577 3.1e-144 516.5 586 53.1
Glyma.06G024600 Glycine max HOM05D007378 ORTHO05D007577 9.8e-143 511.5 678 51.8
Phvul.009G016700 Phaseolus vulgaris HOM05D007378 ORTHO05D007577 1.9e-141 507.3 627 52.5
VMungo1309G2950 Vigna mungo HOM05D007378 ORTHO05D007577 3.0e-139 500.0 708 48.4
Lj1g0027004 Lotus japonicus HOM05D007378 ORTHO05D007577 1.1e-136 491.5 667 49.8
Ca_15483_v3 Cicer arietinum L. HOM05D007378 ORTHO05D007577 7.1e-133 478.8 637 48.7
Lalb_Chr08g0246161 Lupinus albus HOM05D007378 ORTHO05D007577 7.8e-132 475.3 576 53.3
Medtr3g113840 Medicago truncatula HOM05D007378 ORTHO05D007577 2.8e-129 466.8 642 48.8
Psat5g013200 Pisum sativum HOM05D007378 ORTHO05D007577 6.8e-128 462.2 679 47.1
TPR.G34540 Trifolium pratense HOM05D007378 ORTHO05D007577 1.4e-125 454.5 649 47.8
Haze_22630 Corylus avellana HOM05D007378 ORTHO05D007577 1.3e-89 335.1 724 37.8
QL02p011519 Quercus lobata HOM05D007378 ORTHO05D007577 4.1e-88 330.1 733 37.5
Cfa013945 Carpinus fangiana HOM05D007378 ORTHO05D007577 5.9e-87 326.2 716 37.7
Thecc.08G043900 Theobroma cacao HOM05D007378 ORTHO05D007577 1.0e-83 315.5 727 36.6
Prupe.1G365800 Prunus persica HOM05D007378 ORTHO05D007577 3.0e-83 313.9 731 35.7
CiPaw.07G150400 Carya illinoinensis HOM05D007378 ORTHO05D007577 1.7e-78 298.1 684 37.7
Potri.005G238800 Populus trichocarpa HOM05D007378 ORTHO05D007577 2.2e-73 281.2 744 34.3
COL.COLO4_26152 Corchorus olitorius HOM05D007378 ORTHO05D007577 1.4e-72 278.5 743 35.8
MD15G1012700 Malus domestica HOM05D007378 ORTHO05D007577 1.8e-72 278.1 729 35.1
Duzib093G0923 Durio zibethinus HOM05D007378 ORTHO05D007577 2.9e-70 270.8 772 34.1
Duzib116G0067 Durio zibethinus HOM05D007378 ORTHO05D007577 3.8e-70 270.4 720 34.6
MD08G1013300 Malus domestica HOM05D007378 ORTHO05D007577 3.8e-70 270.4 690 34.2
Dinv31841 Davidia involucrata HOM05D007378 ORTHO05D007577 6.5e-70 269.6 703 35.4
Ciclev10000382m.g Citrus clementina HOM05D007378 ORTHO05D007577 2.1e-68 264.6 750 34.8
TWI56G0017 Tripterygium wilfordii HOM05D007378 ORTHO05D007577 1.8e-67 261.5 697 34.6
Potri.002G022800 Populus trichocarpa HOM05D007378 ORTHO05D007577 1.1e-66 258.8 735 33.6
CiPaw.08G066200 Carya illinoinensis HOM05D007378 ORTHO05D007577 5.7e-66 256.5 677 33.5
RcHm_v2.0_Chr6g0302801 Rosa chinensis HOM05D007378 ORTHO05D007577 3.7e-65 253.8 718 33.4
TWI36G1616 Tripterygium wilfordii HOM05D007378 ORTHO05D007577 1.0e-62 245.7 729 32.1
TWI12G0183 Tripterygium wilfordii HOM05D007378 ORTHO05D007577 1.3e-62 245.4 731 33.7
Dinv39514 Davidia involucrata HOM05D007378 ORTHO05D007577 2.2e-62 244.6 643 34.7
FvH4_2g38520 Fragaria vesca HOM05D007378 ORTHO05D007577 6.5e-62 243.0 699 32.9
FAN20G0665 Fragaria x ananassa HOM05D007378 ORTHO05D007577 9.4e-61 239.2 691 32.9
Hma1.2p1_0023F.1_g015450 Hydrangea macrophylla HOM05D007378 ORTHO05D007577 1.8e-59 235.0 667 34.8
Sabra02G0018600 Salix brachista HOM05D007378 ORTHO05D007577 2.0e-58 231.5 698 31.5
Sabra05G0184500 Salix brachista HOM05D007378 ORTHO05D007577 5.7e-58 229.9 745 32.2
Manes.05G147800 Manihot esculenta HOM05D007378 ORTHO05D007577 3.7e-57 227.3 625 33.6
CSS0021578 Camellia sinensis var. sinensis HOM05D007378 ORTHO05D007577 6.3e-57 226.5 751 31.6
FAN15G3724 Fragaria x ananassa HOM05D007378 ORTHO05D007577 6.3e-57 226.5 736 31.1
GSVIVG01009901001 Vitis vinifera HOM05D007378 ORTHO05D007577 2.7e-55 221.1 636 33.6
Eucgr.F00598 Eucalyptus grandis HOM05D007378 ORTHO05D007577 3.5e-55 220.7 720 33.9
Actinidia16984 Actinidia chinensis HOM05D007378 ORTHO05D007577 1.9e-53 214.9 667 31.9
Manes.18G013740 Manihot esculenta HOM05D007378 ORTHO05D007577 4.2e-53 213.8 717 31.9
TAR381G0696 Trochodendron aralioides HOM05D007378 ORTHO05D007577 4.7e-52 210.3 640 33.1
FAN27G0575 Fragaria x ananassa HOM05D007378 ORTHO05D007577 6.1e-52 209.9 704 31.8
Cpa.g.sc26.38 Carica papaya HOM05D007378 ORTHO05D007577 8.0e-52 209.5 680 32.5
PGR031G0679 Punica granatum HOM05D007378 ORTHO05D007577 2.2e-49 201.4 718 32.3
Duzib041G0283 Durio zibethinus HOM05D007378 ORTHO05D007577 3.2e-45 187.6 365 36.7
Actinidia15419 Actinidia chinensis HOM05D007378 ORTHO05D007577 4.7e-44 183.7 695 30.6
Rhsim07G0247100 Rhododendron simsii HOM05D007378 ORTHO05D007577 2.3e-43 181.4 708 29.9
Atru.chr13.296 Acer truncatum HOM05D007378 ORTHO05D007577 3.4e-42 177.6 563 35.5
CSS0010969 Camellia sinensis var. sinensis HOM05D007378 ORTHO05D007577 1.0e-38 166.0 380 33.7
Hund05208 Selenicereus undatus HOM05D007378 ORTHO05D007577 8.6e-38 162.9 707 28.7
MBI05_g30742_MAGBIO Magnolia biondii HOM05D007378 ORTHO05D007577 8.0e-36 156.4 720 29.6
Nn5g30152 Nelumbo nucifera HOM05D007378 ORTHO05D007577 7.5e-34 149.8 749 28.7
vmacro21724 Vaccinium macrocarpon HOM05D007378 ORTHO05D007577 1.8e-32 145.2 518 31.1
DCAR_013867 Daucus carota HOM05D007378 ORTHO05D007577 4.6e-31 140.6 708 26.8
CAN.G311.27 Capsicum annuum HOM05D007378 ORTHO05D007577 1.0e-30 139.4 608 29.6
CANSAT25G3202 Cannabis sativa HOM05D007378 ORTHO05D007577 1.3e-30 139.0 672 30.4
Nitab4.5_0002561g0040 Nicotiana tabacum HOM05D007378 ORTHO05D007577 2.8e-28 131.3 539 28.9
Peaxi162Scf00438g00718 Petunia axillaris HOM05D007378 ORTHO05D007577 2.8e-28 131.3 627 28.4
Cc10_g01700 Coffea canephora HOM05D007378 ORTHO05D007577 1.0e-27 129.4 645 28.5
Sc15g0005020 Simmondsia chinensis HOM05D007378 ORTHO05D007577 1.4e-27 129.0 687 25.6
Duzib041G0240 Durio zibethinus HOM05D007378 ORTHO05D007577 2.6e-26 124.8 306 39.9
PGSC0003DMG400009935 Solanum tuberosum HOM05D007378 ORTHO05D007577 3.4e-26 124.4 634 27.9
AUR62033831 Chenopodium quinoa HOM05D007378 ORTHO05D007577 9.8e-26 122.9 671 26.5
Sopen04g035030 Solanum pennellii HOM05D007378 ORTHO05D007577 3.2e-24 117.9 627 27.3
Solyc04g081420.4 Solanum lycopersicum HOM05D007378 ORTHO05D007577 5.4e-24 117.1 625 27.7
Aqoxy5G01785 Aquilegia oxysepala HOM05D007378 ORTHO05D007577 1.6e-23 115.5 663 28.4
MSTRG.25246 Avicennia marina HOM05D007378 ORTHO05D007577 3.5e-23 114.4 597 27.6
Oeu020868.1 Olea europaea HOM05D007378 ORTHO05D007577 7.3e-21 106.7 591 24.4
PSO700G0360 Papaver somniferum HOM05D007378 ORTHO05D007577 1.2e-20 105.9 715 25.3
vmacro04350 Vaccinium macrocarpon HOM05D007378 ORTHO05D007577 2.8e-20 104.8 283 30.0
PSO170G0005 Papaver somniferum HOM05D007378 ORTHO05D007577 6.2e-20 103.6 685 25.1
TPR.G31883 Trifolium pratense HOM05D007378 ORTHO05D007577 8.1e-20 103.2 128 47.7
CSS0024961 Camellia sinensis var. sinensis HOM05D007378 ORTHO05D007577 1.1e-19 102.8 309 34.0
Thhalv10018322m.g Eutrema salsugineum HOM05D010473 ORTHO05D007577 4.0e-19 100.9 533 29.3
AL2G35720 Arabidopsis lyrata HOM05D010473 ORTHO05D007577 2.6e-18 98.2 553 28.6
BcaB05g24937 Brassica carinata HOM05D010473 ORTHO05D007577 8.3e-17 93.2 552 26.6
Carub.0002s2258 Capsella rubella HOM05D010473 ORTHO05D007577 1.4e-16 92.4 547 27.4
AT1G75730 Arabidopsis thaliana HOM05D010473 ORTHO05D007577 2.4e-16 91.7 588 25.9
A02p20200 Brassica napus HOM05D010473 ORTHO05D007577 9.2e-16 89.7 553 26.0
CSS0029124 Camellia sinensis var. sinensis HOM05D007378 ORTHO05D007577 9.2e-16 89.7 304 34.5
AUR62035752 Chenopodium quinoa HOM05D007378 ORTHO05D007577 4.6e-15 87.4 575 23.8
Sp5g30850 Schrenkiella parvula HOM05D010473 ORTHO05D007577 1.3e-14 85.9 556 26.6
Migut.C00828 Erythranthe guttata HOM05D007378 ORTHO05D007577 2.3e-14 85.1 505 28.1
SalBow7G4715 Salvia bowleyana HOM05D007378 ORTHO05D007577 6.6e-14 83.6 518 26.8
CARHR069140 Cardamine hirsuta HOM05D010473 ORTHO05D007577 1.5e-13 82.4 438 26.5
TAR625G0788 Trochodendron aralioides HOM05D000628 ORTHO05D001121 1.9e-13 82.0 140 43.6
BolC2t09331H Brassica oleracea HOM05D010473 ORTHO05D007577 2.5e-13 81.6 441 28.1
TPR.G35411 Trifolium pratense HOM05D000001 ORTHO05D000003 2.5e-13 81.6 110 48.2
Aa31LG4G5960 Aethionema arabicum HOM05D010473 ORTHO05D007577 4.3e-13 80.9 575 26.8
BraA02t07054Z Brassica rapa HOM05D010473 ORTHO05D007577 7.3e-13 80.1 554 25.6
TPR.G31885 Trifolium pratense HOM05D001130 ORTHO05D013423 7.3e-13 80.1 108 44.4
BcaC03g15618 Brassica carinata HOM05D010473 ORTHO05D007577 9.5e-13 79.7 440 28.4
C02p33740 Brassica napus HOM05D010473 ORTHO05D007577 2.8e-12 78.2 440 28.6
THA.LOC104814031 Tarenaya hassleriana HOM05D010473 ORTHO05D007577 2.8e-12 78.2 391 26.6
Lj4A25T50 Lonicera japonica HOM05D007378 ORTHO05D007577 7.6e-10 70.1 261 32.6
A07p41260 Brassica napus HOM05D010473 ORTHO05D007577 2.2e-09 68.6 609 24.8
BraA07t31661Z Brassica rapa HOM05D010473 ORTHO05D007577 1.4e-08 65.9 449 26.5
BcaC03g15614 Brassica carinata HOM05D010473 ORTHO05D007577 2.4e-08 65.1 306 27.1
C06p49680 Brassica napus HOM05D010473 ORTHO05D007577 5.4e-08 63.9 509 25.3
BolC6t40007H Brassica oleracea HOM05D010473 ORTHO05D007577 7.1e-08 63.5 514 26.1
SGA_v2.0_scaffold92G28233 Striga asiatica HOM05D007378 ORTHO05D007577 3.9e-06 57.8 322 28.3
BcaC08g47058 Brassica carinata HOM05D010473 ORTHO05D007577 6.6e-06 57.0 181 34.8


User provided reference genes

Program Settings