Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.14G214400 Glycine max HOM05D006714 ORTHO05D008103 0.0e+00 1147.9 597 100.0
VMungo0647G1195 Vigna mungo HOM05D006714 ORTHO05D008103 3.0e-220 768.8 563 74.2
Phvul.008G236600 Phaseolus vulgaris HOM05D006714 ORTHO05D008103 4.2e-190 668.7 500 73.8
LjContig00141g0000721 Lotus japonicus HOM05D006714 ORTHO05D008103 6.3e-170 601.7 562 63.0
Medtr5g078170 Medicago truncatula HOM05D006714 ORTHO05D008103 8.5e-167 591.3 559 62.1
TPR.G8266 Trifolium pratense HOM05D006714 ORTHO05D008103 8.8e-164 581.3 579 59.4
arahy.Tifrunner.gnm1.ann1.ZV72ZC Arachis hypogaea HOM05D006714 ORTHO05D008103 8.5e-159 564.7 570 58.9
arahy.Tifrunner.gnm1.ann1.E1Z4YV Arachis hypogaea HOM05D006714 ORTHO05D008103 1.4e-158 563.9 569 58.5
Lalb_Chr04g0251401 Lupinus albus HOM05D006714 ORTHO05D008103 1.0e-156 557.8 537 59.4
Ca_05830_v3 Cicer arietinum L. HOM05D006714 ORTHO05D008103 1.9e-150 537.0 501 62.1
Prupe.4G281200 Prunus persica HOM05D006714 ORTHO05D008103 2.6e-107 393.7 518 47.9
Dinv19038 Davidia involucrata HOM05D006714 ORTHO05D008103 4.4e-107 392.9 602 43.4
Psat2g047840 Pisum sativum HOM05D006714 ORTHO05D008103 1.1e-105 388.3 368 59.0
MD15G1138100 Malus domestica HOM05D006714 ORTHO05D008103 1.7e-103 380.9 523 45.9
Cfa007804 Carpinus fangiana HOM05D006714 ORTHO05D008103 3.9e-103 379.8 517 46.0
RcHm_v2.0_Chr2g0123431 Rosa chinensis HOM05D006714 ORTHO05D008103 1.5e-102 377.9 490 49.6
Dinv28198 Davidia involucrata HOM05D006714 ORTHO05D008103 1.8e-100 370.9 534 45.1
GSVIVG01030704001 Vitis vinifera HOM05D006714 ORTHO05D008103 8.4e-98 362.1 508 45.7
FAN19G0408 Fragaria x ananassa HOM05D005230 ORTHO05D006506 1.4e-97 361.3 448 50.2
Haze_14269 Corylus avellana HOM05D006714 ORTHO05D008103 1.9e-97 360.9 572 42.1
FvH4_1g25400 Fragaria vesca HOM05D006714 ORTHO05D008103 1.9e-97 360.9 448 50.2
Duzib211G0559 Durio zibethinus HOM05D006714 ORTHO05D008103 1.0e-95 355.1 535 43.4
CANSAT78G1609 Cannabis sativa HOM05D006714 ORTHO05D008103 6.6e-95 352.4 509 46.0
CsaV3_5G024210 Cucumis sativus L. HOM05D006714 ORTHO05D008103 1.1e-94 351.7 447 47.4
Thecc.04G114100 Theobroma cacao HOM05D006714 ORTHO05D008103 6.9e-92 342.4 532 42.7
FAN23G2031 Fragaria x ananassa HOM05D006714 ORTHO05D008103 3.4e-91 340.1 452 48.0
Rhsim08G0018800 Rhododendron simsii HOM05D006714 ORTHO05D008103 6.4e-90 335.9 492 43.9
FAN26G1526 Fragaria x ananassa HOM05D006714 ORTHO05D008103 1.4e-89 334.7 465 46.9
TAR629G3521 Trochodendron aralioides HOM05D006714 ORTHO05D008103 4.2e-89 333.2 538 42.9
Hma1.2p1_0158F.1_g070140 Hydrangea macrophylla HOM05D006714 ORTHO05D008103 5.4e-89 332.8 600 39.7
TWI77G0889 Tripterygium wilfordii HOM05D006714 ORTHO05D008103 7.1e-89 332.4 608 40.3
ClCG01G008770 Citrullus lanatus HOM05D006714 ORTHO05D008103 9.3e-89 332.0 472 43.9
Manes.02G077300 Manihot esculenta HOM05D006714 ORTHO05D008103 2.3e-87 327.4 507 41.6
Sed0011157 Sechium edule HOM05D006714 ORTHO05D008103 2.5e-86 323.9 587 39.5
QL02p058308 Quercus lobata HOM05D006714 ORTHO05D008103 9.6e-86 322.0 443 46.7
QL10p014398 Quercus lobata HOM05D006714 ORTHO05D008103 2.1e-85 320.9 439 47.2
Gohir.A07G178400 Gossypium hirsutum HOM05D006714 ORTHO05D008103 4.8e-85 319.7 472 43.9
Gohir.D07G184700 Gossypium hirsutum HOM05D006714 ORTHO05D008103 1.1e-84 318.5 472 43.6
Nn4g24295 Nelumbo nucifera HOM05D006714 ORTHO05D008103 1.4e-84 318.2 549 42.4
Nitab4.5_0000201g0160 Nicotiana tabacum HOM05D006714 ORTHO05D008103 6.9e-84 315.8 577 39.0
Gorai.001G205100 Gossypium raimondii HOM05D006714 ORTHO05D008103 9.0e-84 315.5 472 43.4
Ciclev10011142m.g Citrus clementina HOM05D006714 ORTHO05D008103 1.2e-83 315.1 533 40.2
DCAR_014171 Daucus carota HOM05D006714 ORTHO05D008103 2.0e-83 314.3 576 41.5
Cc07_g13380 Coffea canephora HOM05D006714 ORTHO05D008103 1.7e-82 311.2 497 40.8
Hund13103 Selenicereus undatus HOM05D006714 ORTHO05D008103 6.4e-82 309.3 446 43.3
vmacro18531 Vaccinium macrocarpon HOM05D006714 ORTHO05D008103 1.1e-81 308.5 311 55.9
Sabra17G0108600 Salix brachista HOM05D006714 ORTHO05D008103 1.4e-81 308.1 567 38.3
Migut.K00904 Erythranthe guttata HOM05D006714 ORTHO05D008103 2.7e-80 303.9 587 39.4
Potri.017G130400 Populus trichocarpa HOM05D006714 ORTHO05D008103 7.9e-80 302.4 577 37.1
ECA247G1081 Erigeron canadensis HOM05D006714 ORTHO05D008103 1.0e-79 302.0 596 38.8
CiPaw.03G072500 Carya illinoinensis HOM05D006714 ORTHO05D008103 1.3e-79 301.6 299 56.5
EL10Ac2g03178 Beta vulgaris HOM05D006714 ORTHO05D008103 1.6e-77 294.7 566 38.9
SGA_v2.0_scaffold45G17176 Striga asiatica HOM05D006714 ORTHO05D008103 4.8e-77 293.1 507 41.4
HanXRQChr15g0483231 Helianthus annuus HOM05D006714 ORTHO05D008103 6.2e-77 292.7 444 43.2
Nitab4.5_0006893g0050 Nicotiana tabacum HOM05D006714 ORTHO05D008103 1.1e-76 292.0 565 37.5
PGR031G2162 Punica granatum HOM05D006714 ORTHO05D008103 4.0e-76 290.0 305 54.1
CAN.G222.36 Capsicum annuum HOM05D006714 ORTHO05D008103 5.3e-76 289.7 336 51.5
SalBow5G2523 Salvia bowleyana HOM05D006714 ORTHO05D008103 2.6e-75 287.3 301 55.1
TWI74G0031 Tripterygium wilfordii HOM05D006714 ORTHO05D008103 4.5e-75 286.6 349 48.4
Aqoxy1G00382 Aquilegia oxysepala HOM05D006714 ORTHO05D008103 1.9e-73 281.2 442 43.0
Sc11g0004560 Simmondsia chinensis HOM05D006714 ORTHO05D008103 3.2e-73 280.4 456 42.8
PSO017G5883 Papaver somniferum HOM05D006714 ORTHO05D008103 6.0e-72 276.2 327 51.7
Aa31LG11G13040 Aethionema arabicum HOM05D006714 ORTHO05D008103 2.3e-71 274.2 437 41.4
AUR62018218 Chenopodium quinoa HOM05D006714 ORTHO05D008103 2.3e-71 274.2 382 46.3
Oeu032319.1 Olea europaea HOM05D006714 ORTHO05D008103 2.3e-71 274.2 215 63.7
PSO478G0421 Papaver somniferum HOM05D006714 ORTHO05D008103 2.3e-71 274.2 381 45.9
CARHR196610 Cardamine hirsuta HOM05D006714 ORTHO05D008103 9.6e-70 268.9 601 34.9
Cpa.g.sc116.59 Carica papaya HOM05D006714 ORTHO05D008103 1.3e-69 268.5 286 53.5
AL6G27570 Arabidopsis lyrata HOM05D006714 ORTHO05D008103 2.1e-69 267.7 479 40.3
AT5G16610 Arabidopsis thaliana HOM05D006714 ORTHO05D008103 2.1e-69 267.7 599 34.9
AUR62037796 Chenopodium quinoa HOM05D006714 ORTHO05D008103 3.7e-69 266.9 462 40.5
Lsat_1_v5_gn_3_63641 Lactuca sativa HOM05D006714 ORTHO05D008103 4.8e-69 266.5 552 38.2
Carub.0006s1481 Capsella rubella HOM05D006714 ORTHO05D008103 1.8e-68 264.6 307 50.8
Sopen11g005830 Solanum pennellii HOM05D006714 ORTHO05D008103 3.1e-68 263.8 396 41.9
Solyc11g011060.3 Solanum lycopersicum HOM05D006714 ORTHO05D008103 6.9e-68 262.7 356 44.7
THA.LOC104820908 Tarenaya hassleriana HOM05D006714 ORTHO05D008103 5.8e-67 259.6 255 55.3
Sp6g27560 Schrenkiella parvula HOM05D006714 ORTHO05D008103 1.7e-66 258.1 473 37.6
Thhalv10012945m.g Eutrema salsugineum HOM05D006714 ORTHO05D008103 1.4e-65 255.0 561 36.4
HPP92_011112 Vanilla planifolia HOM05D006714 ORTHO05D008103 4.2e-65 253.4 326 45.7
HPP92_011097 Vanilla planifolia HOM05D006714 ORTHO05D008103 1.1e-62 245.4 326 45.1
Actinidia28805 Actinidia chinensis HOM05D006714 ORTHO05D008103 1.5e-62 245.0 309 47.2
BraA10t44322Z Brassica rapa HOM05D006714 ORTHO05D008103 1.5e-62 245.0 602 35.2
C09p60510 Brassica napus HOM05D006714 ORTHO05D008103 1.1e-60 238.8 192 63.0
BolC9t58884H Brassica oleracea HOM05D006714 ORTHO05D008103 1.1e-60 238.8 192 63.0
A10p22600 Brassica napus HOM05D006714 ORTHO05D008103 6.9e-60 236.1 208 61.1
ATR0171G009 Amborella trichopoda HOM05D006714 ORTHO05D008103 4.5e-59 233.4 269 48.3
BcaB08g36834 Brassica carinata HOM05D006714 ORTHO05D008103 6.1e-56 223.0 234 53.0
CDE07G1834 Ceratophyllum demersum HOM05D006714 ORTHO05D008103 3.7e-53 213.8 262 47.3
Os03g0221300 Oryza sativa ssp. japonica HOM05D006714 ORTHO05D008103 2.4e-52 211.1 296 42.6
SEGI_28129 Sequoiadendron giganteum HOM05D006714 ORTHO05D008103 1.3e-50 205.3 275 46.2
SHI30108 Sapria himalayana HOM05D006714 ORTHO05D008103 1.1e-49 202.2 196 54.6
unitig_748.g8636 Utricularia gibba HOM05D006714 ORTHO05D008103 1.1e-49 202.2 166 60.8
Eucgr.F02863 Eucalyptus grandis HOM05D006714 ORTHO05D008103 1.2e-48 198.7 119 75.6
Peaxi162Scf00305g00412 Petunia axillaris HOM05D006714 ORTHO05D008103 1.3e-45 188.7 122 71.3
QL93p0100_0731 Quercus lobata HOM05D006714 ORTHO05D008103 2.2e-45 188.0 123 70.7
Atru.chr1.1942 Acer truncatum HOM05D006714 ORTHO05D008103 4.1e-44 183.7 121 72.7
PSO063G0106 Papaver somniferum HOM05D006714 ORTHO05D008103 4.1e-44 183.7 145 64.1
SalBow5G2948 Salvia bowleyana HOM05D006714 ORTHO05D008103 7.7e-43 179.5 297 43.8
Pp3c24_16350 Physcomitrium patens HOM05D006714 ORTHO05D008103 2.1e-40 171.4 187 49.7
Pp3c23_20330 Physcomitrium patens HOM05D006714 ORTHO05D008103 6.1e-40 169.9 195 47.7
MELO3C022869.2 Cucumis melo HOM05D006714 ORTHO05D008103 2.8e-37 161.0 357 35.0
QL93p0100_0723 Quercus lobata HOM05D006714 ORTHO05D008103 7.7e-35 152.9 293 41.3
CBR_g12792 Chara braunii HOM05D006714 ORTHO05D008103 1.1e-33 149.1 190 41.1
CSS0024067 Camellia sinensis var. sinensis HOM05D006714 ORTHO05D008103 4.0e-31 140.6 176 49.4
CSS0036373 Camellia sinensis var. sinensis HOM05D006714 ORTHO05D008103 4.0e-31 140.6 176 49.4
SMO340G0205 Selaginella moellendorffii HOM05D006714 ORTHO05D008103 3.2e-25 120.9 118 50.0
Peaxi162Scf00305g00413 Petunia axillaris HOM05D006714 ORTHO05D008103 1.4e-23 115.5 168 47.0
Actinidia35727 Actinidia chinensis HOM05D006714 ORTHO05D008103 4.5e-19 100.5 240 36.2


User provided reference genes

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