Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.14G213100 Glycine max HOM05D008015 ORTHO05D009180 1.9e-90 335.9 178 100.0
VMungo0647G1978 Vigna mungo HOM05D008015 ORTHO05D009180 3.0e-51 205.7 177 70.6
LjContig00141g0001505 Lotus japonicus HOM05D008015 ORTHO05D009180 5.5e-37 158.3 182 51.1
Phvul.008G237600 Phaseolus vulgaris HOM05D008015 ORTHO05D009180 9.3e-37 157.5 135 65.9
Lalb_Chr18g0053531 Lupinus albus HOM05D008015 ORTHO05D009180 1.1e-32 144.1 170 51.2
Lalb_Chr15g0084981 Lupinus albus HOM05D008015 ORTHO05D009180 2.9e-30 136.0 177 49.7
TPR.G30001 Trifolium pratense HOM05D008015 ORTHO05D009180 2.7e-28 129.4 192 47.4
Glyma.18G041300 Glycine max HOM05D008015 ORTHO05D009180 3.3e-26 122.5 147 51.7
Medtr5g077940 Medicago truncatula HOM05D008015 ORTHO05D009180 4.3e-26 122.1 185 47.6
QL02p059324 Quercus lobata HOM05D008015 ORTHO05D009180 5.7e-26 121.7 190 46.8
Potri.004G085100 Populus trichocarpa HOM05D008015 ORTHO05D009180 2.8e-25 119.4 177 43.5
Cc07_g13270 Coffea canephora HOM05D008015 ORTHO05D009180 4.8e-25 118.6 182 37.9
Psat2g045760 Pisum sativum HOM05D008015 ORTHO05D009180 6.3e-25 118.2 181 47.0
Ciclev10012847m.g Citrus clementina HOM05D008015 ORTHO05D009180 1.8e-24 116.7 173 44.5
TAR371G1005 Trochodendron aralioides HOM05D008015 ORTHO05D009180 4.1e-24 115.5 172 45.9
Medtr3g065210 Medicago truncatula HOM05D008015 ORTHO05D009180 4.5e-23 112.1 183 45.9
Potri.017G131300 Populus trichocarpa HOM05D008015 ORTHO05D009180 1.3e-22 110.5 170 42.4
Cfa007792 Carpinus fangiana HOM05D008015 ORTHO05D009180 8.5e-22 107.8 158 45.6
Lalb_Chr17g0346041 Lupinus albus HOM05D008015 ORTHO05D009180 8.5e-22 107.8 171 43.9
TAR629G2519 Trochodendron aralioides HOM05D008015 ORTHO05D009180 1.1e-21 107.5 172 44.2
Nn4g24386 Nelumbo nucifera HOM05D008015 ORTHO05D009180 7.2e-21 104.8 176 42.0
Oeu032314.1 Olea europaea HOM05D008015 ORTHO05D009180 2.7e-20 102.8 165 39.4
Sabra17G0109400 Salix brachista HOM05D008015 ORTHO05D009180 2.7e-20 102.8 176 40.9
MSTRG.3702 Avicennia marina HOM05D008015 ORTHO05D009180 4.7e-20 102.1 173 38.7
Glyma.11G215300 Glycine max HOM05D008015 ORTHO05D009180 6.7e-19 98.2 148 47.3
Cpa.g.sc340.4 Carica papaya HOM05D008015 ORTHO05D009180 1.1e-18 97.4 184 39.7
MD09G1270500 Malus domestica HOM05D008015 ORTHO05D009180 1.1e-18 97.4 220 35.0
VMungo1383G2632 Vigna mungo HOM05D008015 ORTHO05D009180 1.1e-18 97.4 149 47.7
CiPaw.03G073500 Carya illinoinensis HOM05D008015 ORTHO05D009180 2.0e-18 96.7 193 38.3
Thecc.04G053900 Theobroma cacao HOM05D008015 ORTHO05D009180 4.4e-18 95.5 169 42.6
Phvul.001G229400 Phaseolus vulgaris HOM05D008015 ORTHO05D009180 5.7e-18 95.1 146 47.3
Sed0025761 Sechium edule HOM05D008015 ORTHO05D009180 1.3e-17 94.0 150 42.0
Duzib268G1603 Durio zibethinus HOM05D008015 ORTHO05D009180 2.2e-17 93.2 150 46.0
TWI77G0273 Tripterygium wilfordii HOM05D008015 ORTHO05D009180 2.2e-17 93.2 138 42.8
MBI19_g08383_MAGBIO Magnolia biondii HOM05D008015 ORTHO05D009180 4.8e-17 92.0 157 41.4
CSS0009801 Camellia sinensis var. sinensis HOM05D008015 ORTHO05D009180 8.2e-17 91.3 162 38.9
CSS0018355 Camellia sinensis var. sinensis HOM05D008015 ORTHO05D009180 8.2e-17 91.3 162 38.9
MBI13_g45895_MAGBIO Magnolia biondii HOM05D008015 ORTHO05D009180 8.2e-17 91.3 166 36.7
DCAR_014163 Daucus carota HOM05D008015 ORTHO05D009180 1.8e-16 90.1 180 40.0
Actinidia35723 Actinidia chinensis HOM05D008015 ORTHO05D009180 5.3e-16 88.6 153 36.6
CANSAT35G1526 Cannabis sativa HOM05D008015 ORTHO05D009180 5.3e-16 88.6 143 43.4
Manes.02G078100 Manihot esculenta HOM05D008015 ORTHO05D009180 6.9e-16 88.2 161 39.1
Prupe.3G166400 Prunus persica HOM05D008015 ORTHO05D009180 6.9e-16 88.2 219 34.2
arahy.Tifrunner.gnm1.ann1.NRE7W4 Arachis hypogaea HOM05D009275 ORTHO05D009180 9.1e-16 87.8 189 38.6
TWI74G1025 Tripterygium wilfordii HOM05D008015 ORTHO05D009180 5.9e-15 85.1 139 38.8
Actinidia28799 Actinidia chinensis HOM05D008015 ORTHO05D009180 1.3e-14 84.0 154 35.7
MELO3C022825.2 Cucumis melo HOM05D008015 ORTHO05D009180 1.3e-14 84.0 157 38.2
CsaV3_5G023910 Cucumis sativus L. HOM05D009275 ORTHO05D009180 5.0e-14 82.0 147 40.1
CDE05G1037 Ceratophyllum demersum HOM05D008015 ORTHO05D009180 8.5e-14 81.3 140 41.4
Nn3g18370 Nelumbo nucifera HOM05D008015 ORTHO05D009180 2.5e-13 79.7 180 40.0
SalBow5G5173 Salvia bowleyana HOM05D008015 ORTHO05D009180 3.2e-13 79.3 148 36.5
ClCG03G008850 Citrullus lanatus HOM05D008015 ORTHO05D009180 5.5e-13 78.6 169 37.3
Rhsim10G0178500 Rhododendron simsii HOM05D008015 ORTHO05D009180 5.5e-13 78.6 181 37.0
CDE05G0668 Ceratophyllum demersum HOM05D006178 ORTHO05D007504 9.4e-13 77.8 169 37.9
Eucgr.F02874 Eucalyptus grandis HOM05D008015 ORTHO05D009180 9.4e-13 77.8 187 34.8
Gohir.D07G078200 Gossypium hirsutum HOM05D008015 ORTHO05D009180 2.1e-12 76.6 142 42.3
Gorai.001G082600 Gossypium raimondii HOM05D008015 ORTHO05D009180 2.1e-12 76.6 142 42.3
MBI13_g14024_MAGBIO Magnolia biondii HOM05D008015 ORTHO05D009180 2.7e-12 76.3 161 34.8
RcHm_v2.0_Chr3g0491241 Rosa chinensis HOM05D008015 ORTHO05D009180 2.7e-12 76.3 183 31.1
arahy.Tifrunner.gnm1.ann1.I66ZQ3 Arachis hypogaea HOM05D009275 ORTHO05D009180 3.6e-12 75.9 158 38.0
Actinidia17202 Actinidia chinensis HOM05D008015 ORTHO05D009180 1.0e-11 74.3 159 38.4
BraA04t16736Z Brassica rapa HOM05D009275 ORTHO05D009180 1.4e-11 73.9 151 41.1
Gohir.A07G073500 Gossypium hirsutum HOM05D008015 ORTHO05D009180 1.4e-11 73.9 142 41.5
AL7G46310 Arabidopsis lyrata HOM05D009275 ORTHO05D009180 1.8e-11 73.6 166 37.3
A04p10720 Brassica napus HOM05D009275 ORTHO05D009180 1.8e-11 73.6 153 39.9
PSO478G3758 Papaver somniferum HOM05D008015 ORTHO05D009180 1.8e-11 73.6 164 35.4
SGA_v2.0_scaffold45G17152 Striga asiatica HOM05D008015 ORTHO05D009180 1.8e-11 73.6 158 34.8
MBI13_g24899_MAGBIO Magnolia biondii HOM05D008015 ORTHO05D009180 2.3e-11 73.2 60 56.7
Aqoxy1G02179 Aquilegia oxysepala HOM05D008015 ORTHO05D009180 3.0e-11 72.8 160 35.6
Thhalv10027910m.g Eutrema salsugineum HOM05D009275 ORTHO05D009180 3.9e-11 72.4 165 37.6
FvH4_1g30203 Fragaria vesca HOM05D008015 ORTHO05D009180 3.9e-11 72.4 115 40.9
FAN23G1273 Fragaria x ananassa HOM05D008015 ORTHO05D009180 5.2e-11 72.0 115 40.0
Dinv28182 Davidia involucrata HOM05D008015 ORTHO05D009180 8.8e-11 71.2 172 33.7
FAN26G1918 Fragaria x ananassa HOM05D008015 ORTHO05D009180 8.8e-11 71.2 115 40.9
COL.COLO4_13422 Corchorus olitorius HOM05D009275 ORTHO05D009180 1.5e-10 70.5 189 34.9
BcaB06g27100 Brassica carinata HOM05D009275 ORTHO05D009180 2.0e-10 70.1 154 39.0
ATR0753G067 Amborella trichopoda HOM05D008015 ORTHO05D009180 7.4e-10 68.2 162 29.6
Sp5g21250 Schrenkiella parvula HOM05D009275 ORTHO05D009180 9.7e-10 67.8 165 35.2
Sp7g04570 Schrenkiella parvula HOM05D009275 ORTHO05D009180 9.7e-10 67.8 152 37.5
Aa31LG9G17500 Aethionema arabicum HOM05D009275 ORTHO05D009180 1.3e-09 67.4 165 35.8
BcaC02g09585 Brassica carinata HOM05D009275 ORTHO05D009180 1.3e-09 67.4 154 40.3
C04p44430 Brassica napus HOM05D009275 ORTHO05D009180 1.3e-09 67.4 154 40.3
BolC4t26014H Brassica oleracea HOM05D009275 ORTHO05D009180 1.3e-09 67.4 154 40.3
CARHR292200 Cardamine hirsuta HOM05D009275 ORTHO05D009180 1.7e-09 67.0 217 31.8
Lsat_1_v5_gn_8_114880 Lactuca sativa HOM05D008015 ORTHO05D009180 1.7e-09 67.0 168 33.3
AT5G37550 Arabidopsis thaliana HOM05D009275 ORTHO05D009180 3.7e-09 65.9 167 37.1
A02p13520 Brassica napus HOM05D009275 ORTHO05D009180 4.8e-09 65.5 191 31.9
Carub.0007s3272 Capsella rubella HOM05D009275 ORTHO05D009180 8.2e-09 64.7 155 36.8
CARHR215350 Cardamine hirsuta HOM05D009275 ORTHO05D009180 8.2e-09 64.7 160 38.1
BcaC03g14735 Brassica carinata HOM05D009275 ORTHO05D009180 2.4e-08 63.2 191 31.9
C02p21840 Brassica napus HOM05D009275 ORTHO05D009180 2.4e-08 63.2 191 31.9
BolC2t08316H Brassica oleracea HOM05D009275 ORTHO05D009180 2.4e-08 63.2 191 31.9
BraA02t06410Z Brassica rapa HOM05D009275 ORTHO05D009180 2.4e-08 63.2 191 31.9
Thhalv10019019m.g Eutrema salsugineum HOM05D009275 ORTHO05D009180 5.3e-08 62.0 198 32.3
PGR004G2766 Punica granatum HOM05D009275 ORTHO05D009180 1.6e-07 60.5 53 54.7
THA.LOC104822277 Tarenaya hassleriana HOM05D009275 ORTHO05D009180 4.5e-07 58.9 150 33.3
AL2G23880 Arabidopsis lyrata HOM05D009275 ORTHO05D009180 1.3e-06 57.4 205 29.8
BcaB05g24157 Brassica carinata HOM05D009275 ORTHO05D009180 1.7e-06 57.0 180 30.0
FAN19G3187 Fragaria x ananassa HOM05D008015 ORTHO05D009180 1.7e-06 57.0 106 36.8
Carub.0002s1218 Capsella rubella HOM05D009275 ORTHO05D009180 5.0e-06 55.5 184 31.0


User provided reference genes

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