Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.14G211800 Glycine max HOM05D005902 ORTHO05D007182 6.8e-136 487.3 235 100.0
Glyma.02G242000 Glycine max HOM05D005902 ORTHO05D007182 7.6e-103 377.5 188 96.8
VMungo0647G1816 Vigna mungo HOM05D005902 ORTHO05D007182 4.9e-102 374.8 188 96.8
Phvul.008G239100 Phaseolus vulgaris HOM05D005902 ORTHO05D007182 4.3e-98 361.7 188 93.6
arahy.Tifrunner.gnm1.ann1.YJU2T0 Arachis hypogaea HOM05D005902 ORTHO05D007182 2.2e-94 349.4 189 88.4
LjContig00141g0001362 Lotus japonicus HOM05D005902 ORTHO05D007182 2.2e-94 349.4 190 89.5
arahy.Tifrunner.gnm1.ann1.00Q11I Arachis hypogaea HOM05D005902 ORTHO05D007182 3.8e-94 348.6 189 87.8
Lalb_Chr10g0104081 Lupinus albus HOM05D005902 ORTHO05D007182 1.4e-93 346.7 191 88.0
Ca_05775_v3 Cicer arietinum L. HOM05D005902 ORTHO05D007182 3.2e-93 345.5 189 87.3
Lj2A514T43 Lonicera japonica HOM05D005902 ORTHO05D007182 4.2e-93 345.1 188 89.4
Psat2g044640 Pisum sativum HOM05D005902 ORTHO05D007182 4.2e-93 345.1 189 87.8
Haze_14303 Corylus avellana HOM05D005902 ORTHO05D007182 5.4e-93 344.7 187 88.8
TPR.G9985 Trifolium pratense HOM05D005902 ORTHO05D007182 9.3e-93 344.0 189 87.8
CiPaw.03G078000 Carya illinoinensis HOM05D005902 ORTHO05D007182 1.6e-92 343.2 187 88.2
MD17G1258000 Malus domestica HOM05D005902 ORTHO05D007182 2.7e-92 342.4 188 89.4
Medtr5g077260 Medicago truncatula HOM05D005902 ORTHO05D007182 6.0e-92 341.3 189 86.8
GSVIVG01026316001 Vitis vinifera HOM05D005902 ORTHO05D007182 6.0e-92 341.3 189 87.3
Cfa007771 Carpinus fangiana HOM05D005902 ORTHO05D007182 7.9e-92 340.9 187 88.2
RcHm_v2.0_Chr3g0493321 Rosa chinensis HOM05D005902 ORTHO05D007182 7.9e-92 340.9 187 89.3
QL02p060024 Quercus lobata HOM05D005902 ORTHO05D007182 1.3e-91 340.1 190 87.4
CAN.G1464.8 Capsicum annuum HOM05D005902 ORTHO05D007182 2.3e-91 339.3 188 86.7
Lalb_Chr17g0345911 Lupinus albus HOM05D005902 ORTHO05D007182 2.3e-91 339.3 191 86.4
FAN26G1601 Fragaria x ananassa HOM05D005902 ORTHO05D007182 3.0e-91 339.0 187 88.8
Nitab4.5_0017196g0010 Nicotiana tabacum HOM05D005902 ORTHO05D007182 3.0e-91 339.0 188 86.7
Cc07_g13000 Coffea canephora HOM05D005902 ORTHO05D007182 5.1e-91 338.2 189 86.8
Manes.05G062600 Manihot esculenta HOM05D005902 ORTHO05D007182 6.6e-91 337.8 188 87.2
MD09G1263000 Malus domestica HOM05D005902 ORTHO05D007182 8.7e-91 337.4 188 87.8
FAN28G1805 Fragaria x ananassa HOM05D005902 ORTHO05D007182 1.1e-90 337.0 187 88.2
TWI53G1594 Tripterygium wilfordii HOM05D005902 ORTHO05D007182 1.1e-90 337.0 188 87.2
FAN19G0020 Fragaria x ananassa HOM05D005902 ORTHO05D007182 1.9e-90 336.3 187 88.2
Nitab4.5_0000905g0130 Nicotiana tabacum HOM05D005902 ORTHO05D007182 1.9e-90 336.3 188 86.2
PGR031G2550 Punica granatum HOM05D005902 ORTHO05D007182 1.9e-90 336.3 189 86.2
Ciclev10005984m.g Citrus clementina HOM05D005902 ORTHO05D007182 2.5e-90 335.9 189 85.7
Hma1.2p1_0158F.1_g069840 Hydrangea macrophylla HOM05D005902 ORTHO05D007182 5.6e-90 334.7 189 86.2
Solyc05g056560.3 Solanum lycopersicum HOM05D005902 ORTHO05D007182 5.6e-90 334.7 188 85.6
Sopen05g034960 Solanum pennellii HOM05D005902 ORTHO05D007182 5.6e-90 334.7 188 85.6
Peaxi162Scf00525g00623 Petunia axillaris HOM05D005902 ORTHO05D007182 7.4e-90 334.3 188 86.2
Lsat_1_v5_gn_8_111480 Lactuca sativa HOM05D005902 ORTHO05D007182 1.3e-89 333.6 190 87.4
CANSAT80G0886 Cannabis sativa HOM05D005902 ORTHO05D007182 2.1e-89 332.8 191 85.3
Prupe.3G160700 Prunus persica HOM05D005902 ORTHO05D007182 2.1e-89 332.8 188 86.7
PGSC0003DMG400023318 Solanum tuberosum HOM05D005902 ORTHO05D007182 2.1e-89 332.8 188 85.6
Actinidia35717 Actinidia chinensis HOM05D005902 ORTHO05D007182 2.8e-89 332.4 188 84.6
CSS0022144 Camellia sinensis var. sinensis HOM05D005902 ORTHO05D007182 2.8e-89 332.4 189 85.2
Hund03335 Selenicereus undatus HOM05D005902 ORTHO05D007182 2.8e-89 332.4 187 82.9
Nn3g18467 Nelumbo nucifera HOM05D005902 ORTHO05D007182 4.8e-89 331.6 188 84.6
MSTRG.3687 Avicennia marina HOM05D005902 ORTHO05D007182 6.2e-89 331.3 189 84.7
Dinv28227 Davidia involucrata HOM05D005902 ORTHO05D007182 8.1e-89 330.9 189 85.7
vmacro18518 Vaccinium macrocarpon HOM05D005902 ORTHO05D007182 8.1e-89 330.9 189 85.2
TWI74G1040 Tripterygium wilfordii HOM05D005902 ORTHO05D007182 1.4e-88 330.1 188 84.6
MSTRG.15644 Avicennia marina HOM05D005902 ORTHO05D007182 1.8e-88 329.7 189 83.6
PSO063G5475 Papaver somniferum HOM05D005902 ORTHO05D007182 2.4e-88 329.3 188 83.5
MELO3C023753.2 Cucumis melo HOM05D005902 ORTHO05D007182 3.1e-88 328.9 188 84.6
CsaV3_3G020300 Cucumis sativus L. HOM05D005902 ORTHO05D007182 3.1e-88 328.9 188 84.6
Oeu009432.1 Olea europaea HOM05D005902 ORTHO05D007182 3.1e-88 328.9 190 84.7
Rhsim08G0020200 Rhododendron simsii HOM05D005902 ORTHO05D007182 3.1e-88 328.9 189 84.1
SalBow5G2060 Salvia bowleyana HOM05D005902 ORTHO05D007182 3.1e-88 328.9 188 82.4
SGA_v2.0_scaffold45G17133 Striga asiatica HOM05D005902 ORTHO05D007182 4.0e-88 328.6 189 83.6
EL10Ac2g03874 Beta vulgaris HOM05D005902 ORTHO05D007182 5.3e-88 328.2 187 81.8
ClCG05G012140 Citrullus lanatus HOM05D005902 ORTHO05D007182 5.3e-88 328.2 188 84.6
Thecc.01G244600 Theobroma cacao HOM05D005902 ORTHO05D007182 9.0e-88 327.4 189 83.6
Oeu048966.1 Olea europaea HOM05D005902 ORTHO05D007182 2.6e-87 325.9 190 84.2
HanXRQChr09g0259821 Helianthus annuus HOM05D005902 ORTHO05D007182 4.5e-87 325.1 190 85.3
MBI13_g21692_MAGBIO Magnolia biondii HOM05D005902 ORTHO05D007182 4.5e-87 325.1 188 83.0
BcaC08g46080 Brassica carinata HOM05D005902 ORTHO05D007182 1.3e-86 323.6 189 82.5
BolC6t39030H Brassica oleracea HOM05D005902 ORTHO05D007182 1.3e-86 323.6 189 82.5
PSO782G1752 Papaver somniferum HOM05D005902 ORTHO05D007182 1.3e-86 323.6 188 83.0
TAR371G0118 Trochodendron aralioides HOM05D005902 ORTHO05D007182 1.7e-86 323.2 188 81.9
C06p39370 Brassica napus HOM05D005902 ORTHO05D007182 2.2e-86 322.8 189 82.0
BraA07t30938Z Brassica rapa HOM05D005902 ORTHO05D007182 2.9e-86 322.4 189 82.0
DCAR_010066 Daucus carota HOM05D005902 ORTHO05D007182 2.9e-86 322.4 189 83.1
Potri.004G082100 Populus trichocarpa HOM05D005902 ORTHO05D007182 2.9e-86 322.4 188 83.0
THA.LOC104822070 Tarenaya hassleriana HOM05D005902 ORTHO05D007182 2.9e-86 322.4 190 81.6
Aa31LG2G2820 Aethionema arabicum HOM05D005902 ORTHO05D007182 3.8e-86 322.0 189 82.0
AUR62009143 Chenopodium quinoa HOM05D005902 ORTHO05D007182 8.4e-86 320.9 187 81.3
Aqoxy3G04009 Aquilegia oxysepala HOM05D005902 ORTHO05D007182 1.1e-85 320.5 188 78.7
ECA240G4510 Erigeron canadensis HOM05D005902 ORTHO05D007182 1.4e-85 320.1 192 80.2
Migut.K01111 Erythranthe guttata HOM05D005902 ORTHO05D007182 1.4e-85 320.1 189 82.0
C02p21750 Brassica napus HOM05D005902 ORTHO05D007182 1.9e-85 319.7 189 81.0
Duzib187G0521 Durio zibethinus HOM05D005902 ORTHO05D007182 1.9e-85 319.7 189 82.0
Sabra04G0054600 Salix brachista HOM05D005902 ORTHO05D007182 1.9e-85 319.7 188 82.4
AT1G66080 Arabidopsis thaliana HOM05D005902 ORTHO05D007182 2.4e-85 319.3 189 81.0
BcaB03g15295 Brassica carinata HOM05D005902 ORTHO05D007182 2.4e-85 319.3 188 81.4
A07p33100 Brassica napus HOM05D005902 ORTHO05D007182 2.4e-85 319.3 189 81.5
Cpa.g.sc178.4 Carica papaya HOM05D005902 ORTHO05D007182 3.2e-85 318.9 188 80.3
AUR62039116 Chenopodium quinoa HOM05D005902 ORTHO05D007182 3.2e-85 318.9 187 81.3
Sc09g0004530 Simmondsia chinensis HOM05D005902 ORTHO05D007182 3.2e-85 318.9 189 81.0
A02p13450 Brassica napus HOM05D005902 ORTHO05D007182 4.2e-85 318.5 189 80.4
BraA02t06403Z Brassica rapa HOM05D005902 ORTHO05D007182 4.2e-85 318.5 189 80.4
unitig_748.g7250 Utricularia gibba HOM05D005902 ORTHO05D007182 4.2e-85 318.5 188 80.3
AL2G23690 Arabidopsis lyrata HOM05D005902 ORTHO05D007182 5.5e-85 318.2 189 80.4
Atru.chr1.1947 Acer truncatum HOM05D005902 ORTHO05D007182 7.1e-85 317.8 189 82.5
BcaB05g24153 Brassica carinata HOM05D005902 ORTHO05D007182 1.6e-84 316.6 189 79.9
Sed0000187 Sechium edule HOM05D005902 ORTHO05D007182 2.1e-84 316.2 188 80.9
Duzib264G0381 Durio zibethinus HOM05D005902 ORTHO05D007182 2.7e-84 315.8 188 81.4
Gohir.D12G002400 Gossypium hirsutum HOM05D005902 ORTHO05D007182 2.7e-84 315.8 189 80.4
Carub.0002s1207 Capsella rubella HOM05D005902 ORTHO05D007182 3.5e-84 315.5 189 79.9
Thhalv10019182m.g Eutrema salsugineum HOM05D005902 ORTHO05D007182 6.0e-84 314.7 189 80.4
Gohir.A12G002700 Gossypium hirsutum HOM05D005902 ORTHO05D007182 6.0e-84 314.7 189 80.4
CARHR058040 Cardamine hirsuta HOM05D005902 ORTHO05D007182 2.3e-83 312.8 189 78.8
CDE05G1035 Ceratophyllum demersum HOM05D005902 ORTHO05D007182 5.1e-83 311.6 187 79.1
Gorai.008G001800 Gossypium raimondii HOM05D005902 ORTHO05D007182 6.7e-83 311.2 190 78.9
CDE05G2622 Ceratophyllum demersum HOM05D005902 ORTHO05D007182 2.5e-82 309.3 187 78.6
ATR0598G055 Amborella trichopoda HOM05D005902 ORTHO05D007182 2.1e-81 306.2 188 77.7
Sed0027099 Sechium edule HOM05D005902 ORTHO05D007182 3.7e-81 305.4 187 80.7
COL.COLO4_08161 Corchorus olitorius HOM05D005902 ORTHO05D007182 8.1e-81 304.3 178 82.6
SHI30114 Sapria himalayana HOM05D002544 ORTHO05D007856 1.8e-80 303.1 191 76.4
Ah.10g034300 Amaranthus hybridus HOM05D005902 ORTHO05D007182 1.9e-69 266.5 154 80.5
SMO278G0026 Selaginella moellendorffii HOM05D005902 ORTHO05D007182 2.5e-69 266.2 188 66.0
AagrBONN_evm.TU.Sc2ySwM_344.787 Anthoceros agrestis HOM05D005902 ORTHO05D007182 1.6e-68 263.5 188 66.0
Sp5g21150 Schrenkiella parvula HOM05D005902 ORTHO05D007182 1.6e-68 263.5 158 80.4
TAR629G3091 Trochodendron aralioides HOM05D005902 ORTHO05D007182 1.8e-67 260.0 155 81.9
Pp3c27_3020 Physcomitrium patens HOM05D005902 ORTHO05D007182 8.2e-65 251.1 187 64.2
FvH4_1g28840 Fragaria vesca HOM05D005902 ORTHO05D007182 3.1e-64 249.2 144 86.8
Mapoly0006s0187 Marchantia polymorpha HOM05D005902 ORTHO05D007182 3.1e-64 249.2 187 65.2
Pp3c16_2230 Physcomitrium patens HOM05D005902 ORTHO05D007182 1.3e-62 243.8 188 63.8
CSS0046217 Camellia sinensis var. sinensis HOM05D005902 ORTHO05D007182 2.9e-62 242.7 149 81.2
Pp3c3_23430 Physcomitrium patens HOM05D005902 ORTHO05D007182 6.5e-54 214.9 184 54.3
Pp3c10_12120 Physcomitrium patens HOM05D005902 ORTHO05D007182 3.2e-53 212.6 184 53.8
SMO367G0342 Selaginella moellendorffii HOM05D005902 ORTHO05D007182 2.7e-52 209.5 189 52.4
HPP92_002287 Vanilla planifolia HOM05D005902 ORTHO05D007182 2.7e-52 209.5 151 68.9
CBR_g54208 Chara braunii HOM05D005902 ORTHO05D007182 4.7e-52 208.8 190 55.8
CBR_g54207 Chara braunii HOM05D005902 ORTHO05D007182 2.8e-49 199.5 182 54.4
Mapoly0001s0397 Marchantia polymorpha HOM05D005902 ORTHO05D007182 2.8e-49 199.5 188 51.6
CSS0023311 Camellia sinensis var. sinensis HOM05D005902 ORTHO05D007182 1.0e-46 191.0 184 58.2
Os03g0237500 Oryza sativa ssp. japonica HOM05D005902 ORTHO05D007182 8.2e-41 171.4 193 52.3
Zm00001eb010060 Zea mays HOM05D005902 ORTHO05D007182 1.1e-40 171.0 194 50.5
MD03G1052600 Malus domestica HOM05D005902 ORTHO05D007182 1.2e-34 151.0 91 80.2
BcaC03g14730 Brassica carinata HOM05D005902 ORTHO05D007182 2.0e-34 150.2 91 80.2
MD01G1041600 Malus domestica HOM05D005902 ORTHO05D007182 1.8e-27 127.1 79 78.5
Cre16.g691215 Chlamydomonas reinhardtii HOM05D005902 ORTHO05D007182 2.2e-25 120.2 184 36.4
MCO11G231 Micromonas commoda HOM05D005902 ORTHO05D007182 2.8e-25 119.8 184 36.4
MD16G1261800 Malus domestica HOM05D005902 ORTHO05D007182 5.0e-22 109.0 53 92.5
PRCOL_00005463 Prasinoderma coloniale HOM05D005902 ORTHO05D007182 2.1e-12 77.0 152 34.2
BolC2t08309H Brassica oleracea HOM05D005902 ORTHO05D007182 7.0e-08 62.0 28 96.4
CSS0027287 Camellia sinensis var. sinensis HOM05D000006 ORTHO05D000001 2.7e-07 60.1 29 86.2


User provided reference genes

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