Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.14G210400 Glycine max HOM05D005127 ORTHO05D006022 6.3e-213 743.8 371 100.0
Glyma.02G240800 Glycine max HOM05D005127 ORTHO05D006022 6.4e-197 690.6 375 93.6
VMungo0647G1176 Vigna mungo HOM05D005127 ORTHO05D006022 2.5e-185 652.1 371 88.9
Phvul.008G240900 Phaseolus vulgaris HOM05D005127 ORTHO05D006022 3.1e-183 645.2 371 88.1
Lalb_Chr17g0345881 Lupinus albus HOM05D005127 ORTHO05D006022 2.7e-163 578.9 374 78.6
Lalb_Chr10g0104061 Lupinus albus HOM05D005127 ORTHO05D006022 4.6e-163 578.2 372 76.6
Medtr5g076930 Medicago truncatula HOM05D005127 ORTHO05D006022 2.2e-157 559.3 373 75.6
Psat2g042880 Pisum sativum HOM05D005127 ORTHO05D006022 2.2e-157 559.3 375 74.9
Ca_05761_v3 Cicer arietinum L. HOM05D005127 ORTHO05D006022 7.1e-156 554.3 379 73.4
TPR.G5353 Trifolium pratense HOM05D005127 ORTHO05D006022 2.1e-152 542.7 385 71.9
LjContig00141g0000865 Lotus japonicus HOM05D005127 ORTHO05D006022 1.0e-146 523.9 374 73.3
CiPaw.03G076300 Carya illinoinensis HOM05D005127 ORTHO05D006022 5.1e-146 521.5 371 70.1
TAR371G0217 Trochodendron aralioides HOM05D005127 ORTHO05D006022 1.6e-144 516.5 371 69.0
MELO3C020241.2 Cucumis melo HOM05D005127 ORTHO05D006022 6.9e-143 511.1 371 67.4
Manes.10G079000 Manihot esculenta HOM05D005127 ORTHO05D006022 6.9e-143 511.1 376 67.3
ClCG05G011360 Citrullus lanatus HOM05D005127 ORTHO05D006022 3.4e-142 508.8 371 66.6
CsaV3_3G021100 Cucumis sativus L. HOM05D005127 ORTHO05D006022 4.5e-142 508.4 371 67.1
Sed0023234 Sechium edule HOM05D005127 ORTHO05D006022 1.0e-141 507.3 371 67.1
Prupe.3G014700 Prunus persica HOM05D005127 ORTHO05D006022 3.8e-141 505.4 375 68.0
Sabra04G0053400 Salix brachista HOM05D005127 ORTHO05D006022 3.8e-141 505.4 370 66.8
CSS0034699 Camellia sinensis var. sinensis HOM05D005127 ORTHO05D006022 9.4e-140 500.7 371 67.1
Potri.004G080600 Populus trichocarpa HOM05D005127 ORTHO05D006022 1.4e-138 496.9 371 66.0
Hma1.2p1_0158F.1_g069660 Hydrangea macrophylla HOM05D005127 ORTHO05D006022 3.9e-138 495.4 371 67.1
Potri.017G139800 Populus trichocarpa HOM05D005127 ORTHO05D006022 5.1e-138 495.0 371 66.3
MBI06_g13889_MAGBIO Magnolia biondii HOM05D005127 ORTHO05D006022 2.0e-137 493.0 370 66.5
Sabra17G0118000 Salix brachista HOM05D005127 ORTHO05D006022 2.5e-137 492.7 371 65.5
Cfa007754 Carpinus fangiana HOM05D005127 ORTHO05D006022 4.3e-137 491.9 371 66.6
Haze_14318 Corylus avellana HOM05D005127 ORTHO05D006022 9.7e-137 490.7 371 66.6
Atru.chr1.2154 Acer truncatum HOM05D005127 ORTHO05D006022 1.8e-135 486.5 371 65.8
Rhsim08G0021200 Rhododendron simsii HOM05D005127 ORTHO05D006022 6.9e-135 484.6 371 66.0
Ciclev10012019m.g Citrus clementina HOM05D005127 ORTHO05D006022 9.1e-135 484.2 374 65.2
CANSAT21G1480 Cannabis sativa HOM05D005127 ORTHO05D006022 1.2e-134 483.8 371 65.0
MD09G1279600 Malus domestica HOM05D005127 ORTHO05D006022 2.0e-134 483.0 375 65.3
PGR042G2448 Punica granatum HOM05D005127 ORTHO05D006022 2.0e-134 483.0 379 64.6
Thecc.04G065100 Theobroma cacao HOM05D005127 ORTHO05D006022 2.0e-134 483.0 373 64.9
Duzib138G1903 Durio zibethinus HOM05D005127 ORTHO05D006022 7.7e-134 481.1 373 64.6
COL.COLO4_19768 Corchorus olitorius HOM05D005127 ORTHO05D006022 1.0e-133 480.7 375 62.4
RcHm_v2.0_Chr3g0488741 Rosa chinensis HOM05D005127 ORTHO05D006022 1.1e-132 477.2 372 64.2
Eucgr.H04888 Eucalyptus grandis HOM05D005127 ORTHO05D006022 3.2e-132 475.7 379 63.3
PSO724G0684 Papaver somniferum HOM05D005127 ORTHO05D006022 4.2e-132 475.3 373 63.8
PSO729G0281 Papaver somniferum HOM05D005127 ORTHO05D006022 4.2e-132 475.3 373 63.5
Cpa.g.sc178.24 Carica papaya HOM05D005127 ORTHO05D006022 7.2e-132 474.6 375 64.3
TWI74G1018 Tripterygium wilfordii HOM05D005127 ORTHO05D006022 3.9e-130 468.8 373 63.5
Gorai.001G083200 Gossypium raimondii HOM05D005127 ORTHO05D006022 6.7e-130 468.0 376 62.5
Gohir.D07G078700 Gossypium hirsutum HOM05D005127 ORTHO05D006022 1.1e-129 467.2 376 62.2
Aqoxy3G04119 Aquilegia oxysepala HOM05D005127 ORTHO05D006022 2.6e-129 466.1 371 61.2
Gohir.A07G074000 Gossypium hirsutum HOM05D005127 ORTHO05D006022 1.7e-128 463.4 376 62.0
FAN23G3138 Fragaria x ananassa HOM05D005127 ORTHO05D006022 4.8e-128 461.8 373 63.0
FAN28G1653 Fragaria x ananassa HOM05D005127 ORTHO05D006022 1.4e-127 460.3 373 62.7
FAN28G2393 Fragaria x ananassa HOM05D005127 ORTHO05D006022 1.4e-127 460.3 373 62.7
FvH4_1g27360 Fragaria vesca HOM05D005127 ORTHO05D006022 3.1e-127 459.1 373 62.7
QL02p064340 Quercus lobata HOM05D005127 ORTHO05D006022 5.3e-127 458.4 364 65.4
FAN19G2113 Fragaria x ananassa HOM05D005127 ORTHO05D006022 7.0e-127 458.0 373 62.5
FAN26G1075 Fragaria x ananassa HOM05D005127 ORTHO05D006022 7.0e-127 458.0 373 62.2
CARHR077230 Cardamine hirsuta HOM05D005127 ORTHO05D006022 2.5e-124 449.5 374 61.0
Gorai.002G111000 Gossypium raimondii HOM05D005127 ORTHO05D006022 4.2e-124 448.7 377 60.7
Sp3g02250 Schrenkiella parvula HOM05D005127 ORTHO05D006022 5.5e-124 448.4 374 61.5
ATR0807G162 Amborella trichopoda HOM05D005127 ORTHO05D006022 2.1e-123 446.4 372 61.3
Gohir.D01G085400 Gossypium hirsutum HOM05D005127 ORTHO05D006022 2.1e-123 446.4 377 60.5
MSTRG.15431 Avicennia marina HOM05D005127 ORTHO05D006022 6.1e-123 444.9 376 61.4
Nitab4.5_0000091g0380 Nicotiana tabacum HOM05D005127 ORTHO05D006022 1.8e-122 443.4 373 61.1
Nitab4.5_0004645g0030 Nicotiana tabacum HOM05D005127 ORTHO05D006022 1.8e-122 443.4 381 62.2
Cc07_g12800 Coffea canephora HOM05D005127 ORTHO05D006022 2.3e-122 443.0 375 61.3
AT3G03210 Arabidopsis thaliana HOM05D005127 ORTHO05D006022 5.2e-122 441.8 376 60.4
Thhalv10020974m.g Eutrema salsugineum HOM05D005127 ORTHO05D006022 1.5e-121 440.3 374 59.4
AL3G12820 Arabidopsis lyrata HOM05D005127 ORTHO05D006022 2.0e-121 439.9 376 60.4
BcaC05g30528 Brassica carinata HOM05D005127 ORTHO05D006022 2.0e-121 439.9 374 59.9
Gohir.A01G100900 Gossypium hirsutum HOM05D005127 ORTHO05D006022 2.0e-121 439.9 377 59.4
Oeu012525.1 Olea europaea HOM05D005127 ORTHO05D006022 2.0e-121 439.9 383 59.5
C05p63600 Brassica napus HOM05D005127 ORTHO05D006022 2.6e-121 439.5 374 60.2
BolC5t35029H Brassica oleracea HOM05D005127 ORTHO05D006022 2.6e-121 439.5 374 60.2
Carub.0003s0236 Capsella rubella HOM05D005127 ORTHO05D006022 2.6e-121 439.5 376 60.6
BcaC05g30317 Brassica carinata HOM05D005127 ORTHO05D006022 4.4e-121 438.7 373 60.9
Aa31LG5G13690 Aethionema arabicum HOM05D005127 ORTHO05D006022 5.7e-121 438.3 374 59.4
PGSC0003DMG400016729 Solanum tuberosum HOM05D005127 ORTHO05D006022 9.7e-121 437.6 383 60.3
SGA_v2.0_scaffold135G34932 Striga asiatica HOM05D005127 ORTHO05D006022 2.8e-120 436.0 370 61.1
A05p43980 Brassica napus HOM05D005127 ORTHO05D006022 4.8e-120 435.3 376 59.6
Solyc03g031850.1 Solanum lycopersicum HOM05D005127 ORTHO05D006022 8.2e-120 434.5 373 60.9
PGSC0003DMG400042292 Solanum tuberosum HOM05D005127 ORTHO05D006022 1.8e-119 433.3 376 60.1
Sopen03g005720 Solanum pennellii HOM05D005127 ORTHO05D006022 2.4e-119 433.0 373 60.3
BraSC90t46712Z Brassica rapa HOM05D005127 ORTHO05D006022 3.1e-119 432.6 374 58.8
Sopen02g025870 Solanum pennellii HOM05D005127 ORTHO05D006022 3.1e-119 432.6 385 59.7
CAN.G404.4 Capsicum annuum HOM05D005127 ORTHO05D006022 5.3e-119 431.8 373 60.9
Peaxi162Scf00521g00053 Petunia axillaris HOM05D005127 ORTHO05D006022 7.0e-119 431.4 375 60.3
Sc09g0004500 Simmondsia chinensis HOM05D005127 ORTHO05D006022 2.0e-118 429.9 376 60.4
Dinv19078 Davidia involucrata HOM05D005127 ORTHO05D006022 3.5e-118 429.1 371 60.1
Oeu039702.1 Olea europaea HOM05D005127 ORTHO05D006022 1.3e-117 427.2 381 58.0
Nitab4.5_0007410g0020 Nicotiana tabacum HOM05D005127 ORTHO05D006022 2.2e-117 426.4 378 60.1
Lj4P252T15 Lonicera japonica HOM05D005127 ORTHO05D006022 1.5e-116 423.7 353 61.2
GSVIVG01035235001 Vitis vinifera HOM05D005127 ORTHO05D006022 4.2e-116 422.2 372 60.2
AUR62037482 Chenopodium quinoa HOM05D005127 ORTHO05D009825 2.1e-115 419.9 373 59.2
THA.LOC104827223 Tarenaya hassleriana HOM05D005127 ORTHO05D006022 1.8e-114 416.8 377 58.9
Actinidia35707 Actinidia chinensis HOM05D005127 ORTHO05D006022 5.2e-114 415.2 373 59.5
Nitab4.5_0010422g0010 Nicotiana tabacum HOM05D005127 ORTHO05D006022 2.2e-112 409.8 377 58.1
HanXRQChr14g0443471 Helianthus annuus HOM05D005127 ORTHO05D006022 3.7e-112 409.1 371 59.0
CAN.G1681.7 Capsicum annuum HOM05D005127 ORTHO05D006022 4.8e-112 408.7 373 57.4
Migut.H02248 Erythranthe guttata HOM05D005127 ORTHO05D006022 6.3e-112 408.3 377 58.9
DCAR_003746 Daucus carota HOM05D005127 ORTHO05D006022 8.3e-112 407.9 356 57.3
Gorai.007G188500 Gossypium raimondii HOM05D005127 ORTHO05D006022 2.7e-110 402.9 375 55.5
Lsat_1_v5_gn_2_71721 Lactuca sativa HOM05D005127 ORTHO05D006022 5.0e-109 398.7 363 57.0
Gohir.A11G169700 Gossypium hirsutum HOM05D005127 ORTHO05D006022 2.7e-107 392.9 362 55.2
Gohir.D11G175900 Gossypium hirsutum HOM05D005127 ORTHO05D006022 3.7e-104 382.5 372 55.1
SHI30090 Sapria himalayana HOM05D005127 ORTHO05D006022 1.5e-100 370.5 369 53.1
SalBow3G2114 Salvia bowleyana HOM05D005127 ORTHO05D006022 2.5e-100 369.8 340 55.0
SalBow3G1912 Salvia bowleyana HOM05D005127 ORTHO05D006022 4.3e-100 369.0 341 55.1
SEGI_34462 Sequoiadendron giganteum HOM05D005127 ORTHO05D006022 3.5e-94 349.4 459 43.1
Zm00001eb393730 Zea mays HOM05D005127 ORTHO05D006022 3.3e-92 342.8 374 48.4
Os10g0539400 Oryza sativa ssp. japonica HOM05D005127 ORTHO05D006022 2.6e-89 333.2 377 47.7
CDE01G0221 Ceratophyllum demersum HOM05D005127 ORTHO05D006022 1.1e-87 327.8 297 53.5
ECA238G3642 Erigeron canadensis HOM05D005127 ORTHO05D006022 4.6e-86 322.4 281 58.0
CDE02G3442 Ceratophyllum demersum HOM05D005127 ORTHO05D006022 7.3e-84 315.1 370 45.4
Mapoly0003s0310 Marchantia polymorpha HOM05D005127 ORTHO05D006022 2.9e-80 303.1 378 44.2
Zm00001eb022160 Zea mays HOM05D005127 ORTHO05D006022 1.1e-79 301.2 358 46.4
Oeu045801.1 Olea europaea HOM05D005127 ORTHO05D006022 5.8e-73 278.9 348 45.1
Migut.H02247 Erythranthe guttata HOM05D005127 ORTHO05D006022 9.9e-73 278.1 351 45.0
SMO141G0134 Selaginella moellendorffii HOM05D005127 ORTHO05D006022 4.3e-68 262.7 372 39.5
Pp3c8_14800 Physcomitrium patens HOM05D005127 ORTHO05D006022 3.4e-65 253.1 372 39.0
unitig_699.g19573 Utricularia gibba HOM05D005127 ORTHO05D006022 5.4e-63 245.7 237 56.1
Solyc02g081230.4 Solanum lycopersicum HOM05D005127 ORTHO05D006022 1.1e-58 231.5 182 62.1
AUR62004769 Chenopodium quinoa HOM05D005127 ORTHO05D006022 1.5e-57 227.6 216 55.6
HPP92_020636 Vanilla planifolia HOM05D005127 ORTHO05D006022 3.4e-57 226.5 202 53.0
PSO063G7663 Papaver somniferum HOM05D005127 ORTHO05D006022 2.8e-51 206.8 176 60.2
AagrBONN_evm.TU.Sc2ySwM_228.805 Anthoceros agrestis HOM05D005127 ORTHO05D006022 4.9e-48 196.1 288 37.8
AagrBONN_evm.TU.Sc2ySwM_117.2318 Anthoceros agrestis HOM05D005127 ORTHO05D006022 3.3e-44 183.3 287 38.3
Lsat_1_v5_gn_2_6720 Lactuca sativa HOM05D005127 ORTHO05D006022 9.6e-44 181.8 162 57.4
Lsat_1_v5_gn_5_127001 Lactuca sativa HOM05D005127 ORTHO05D006022 7.6e-41 172.2 144 59.0
Gorai.009G350000 Gossypium raimondii HOM05D000154 ORTHO05D006022 3.8e-40 169.9 140 58.6
Gorai.004G162300 Gossypium raimondii HOM05D005127 ORTHO05D006022 1.4e-39 167.9 140 59.3
CBR_g39794 Chara braunii HOM05D005127 ORTHO05D006022 1.9e-36 157.5 293 33.1
Gorai.005G117100 Gossypium raimondii HOM05D005127 ORTHO05D006022 2.5e-36 157.1 144 56.2
Medtr5g076940 Medicago truncatula HOM05D005127 ORTHO05D006022 6.9e-34 149.1 104 71.2
RcHm_v2.0_Chr5g0027411 Rosa chinensis HOM05D005127 ORTHO05D006022 8.7e-29 132.1 254 40.9
Gohir.D05G325801 Gossypium hirsutum HOM05D000154 ORTHO05D006022 1.6e-27 127.9 100 59.0
Gorai.011G105200 Gossypium raimondii HOM05D000154 ORTHO05D006022 2.2e-27 127.5 101 59.4
Gohir.D08G156000 Gossypium hirsutum HOM05D005127 ORTHO05D006022 3.1e-26 123.6 100 57.0
Gorai.002G056700 Gossypium raimondii HOM05D005127 ORTHO05D006022 2.6e-25 120.6 100 56.0
RcHm_v2.0_Chr5g0042551 Rosa chinensis HOM05D005127 ORTHO05D006022 1.7e-24 117.9 111 55.9
Gohir.D04G098033 Gossypium hirsutum HOM05D005127 ORTHO05D006022 5.5e-23 112.8 105 53.3
MCO15G483 Micromonas commoda HOM05D005127 ORTHO05D006022 3.0e-21 107.1 289 27.7
RcHm_v2.0_Chr4g0398381 Rosa chinensis HOM05D005127 ORTHO05D006022 1.4e-18 98.2 91 61.5
AL3G25840 Arabidopsis lyrata HOM05D005127 ORTHO05D006022 2.4e-18 97.4 98 53.1
AL8G37650 Arabidopsis lyrata HOM05D005127 ORTHO05D006022 2.4e-18 97.4 98 53.1
Gohir.D02G103100 Gossypium hirsutum HOM05D000154 ORTHO05D006022 3.4e-17 93.6 77 55.8
Dinv28241 Davidia involucrata HOM05D005127 ORTHO05D006022 2.3e-13 80.9 114 45.6
Nn2g14442 Nelumbo nucifera HOM05D005127 ORTHO05D006022 2.0e-12 77.8 45 84.4
GSVIVG01034874001 Vitis vinifera HOM05D005127 ORTHO05D006022 2.6e-12 77.4 77 53.2
A09p28600 Brassica napus HOM05D005127 ORTHO05D006022 1.7e-11 74.7 58 67.2
GSVIVG01000363001 Vitis vinifera HOM05D005127 ORTHO05D006022 1.7e-11 74.7 65 56.9
GSVIVG01038053001 Vitis vinifera HOM05D005127 ORTHO05D006022 6.3e-11 72.8 59 59.3
vmacro09980 Vaccinium macrocarpon HOM05D000060 ORTHO05D003150 4.1e-10 70.1 80 45.0


User provided reference genes

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