Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.14G207900 Glycine max HOM05D003795 ORTHO05D004308 0.0e+00 1213.4 710 100.0
Glyma.02G239000 Glycine max HOM05D003795 ORTHO05D004308 1.8e-261 906.0 731 77.2
VMungo0647G0124 Vigna mungo HOM05D003795 ORTHO05D004308 1.6e-244 849.7 728 72.3
Phvul.008G243000 Phaseolus vulgaris HOM05D003795 ORTHO05D004308 1.2e-241 840.1 718 71.3
LjContig00141g0025814 Lotus japonicus HOM05D003795 ORTHO05D004308 4.7e-156 555.8 786 53.8
Phvul.006G083400 Phaseolus vulgaris HOM05D003795 ORTHO05D004308 1.5e-138 497.7 770 52.1
arahy.Tifrunner.gnm1.ann1.SLU9BZ Arachis hypogaea HOM05D003795 ORTHO05D004308 2.3e-134 483.8 786 49.2
arahy.Tifrunner.gnm1.ann1.686QXT Arachis hypogaea HOM05D003795 ORTHO05D004308 1.5e-133 481.1 792 49.0
Glyma.18G048000 Glycine max HOM05D003795 ORTHO05D004308 2.0e-130 470.7 782 49.4
VMungo0540G0009 Vigna mungo HOM05D003795 ORTHO05D004308 2.0e-130 470.7 764 50.1
Glyma.11G202800 Glycine max HOM05D003795 ORTHO05D004308 6.6e-126 455.7 786 48.7
QL02p056567 Quercus lobata HOM05D003795 ORTHO05D004308 2.8e-124 450.3 759 47.6
QL02p055515 Quercus lobata HOM05D003795 ORTHO05D004308 4.3e-117 426.4 795 44.5
Medtr3g063210 Medicago truncatula HOM05D003795 ORTHO05D004308 6.4e-113 412.5 774 45.2
Haze_14040 Corylus avellana HOM05D003795 ORTHO05D004308 3.5e-111 406.8 782 45.3
Psat2g048640 Pisum sativum HOM05D003795 ORTHO05D004308 1.7e-110 404.4 752 46.0
Ca_05735_v3 Cicer arietinum L. HOM05D003795 ORTHO05D004308 8.1e-108 395.6 691 47.8
Potri.012G145200 Populus trichocarpa HOM05D003795 ORTHO05D004308 1.4e-107 394.8 780 43.6
Duzib138G1939 Durio zibethinus HOM05D003795 ORTHO05D004308 4.0e-107 393.3 765 45.4
Lj6g0018352 Lotus japonicus HOM05D003795 ORTHO05D004308 9.9e-106 388.7 771 45.5
MELO3C025107.2 Cucumis melo HOM05D003795 ORTHO05D004308 1.3e-105 388.3 778 42.5
Medtr5g076140 Medicago truncatula HOM05D003795 ORTHO05D004308 1.3e-105 388.3 687 47.2
Ca_15099_v3 Cicer arietinum L. HOM05D003795 ORTHO05D004308 5.4e-104 382.9 752 44.4
Manes.02G083300 Manihot esculenta HOM05D003795 ORTHO05D004308 2.7e-103 380.6 781 43.4
CsaV3_5G024360 Cucumis sativus L. HOM05D003795 ORTHO05D004308 4.3e-101 373.2 786 41.2
Sabra12G0109200 Salix brachista HOM05D003795 ORTHO05D004308 9.6e-101 372.1 643 47.0
Thecc.04G056400 Theobroma cacao HOM05D003795 ORTHO05D004308 1.8e-99 367.9 775 42.7
CiPaw.03G010000 Carya illinoinensis HOM05D003795 ORTHO05D004308 5.3e-99 366.3 785 42.5
TPR.G15394 Trifolium pratense HOM05D003795 ORTHO05D004308 6.9e-99 365.9 761 44.5
Dinv28269 Davidia involucrata HOM05D003795 ORTHO05D004308 2.6e-98 364.0 768 41.7
ClCG01G008410 Citrullus lanatus HOM05D003795 ORTHO05D004308 2.9e-97 360.5 797 41.0
Manes.01G125700 Manihot esculenta HOM05D003795 ORTHO05D004308 3.8e-97 360.1 778 42.8
Gohir.A11G170300 Gossypium hirsutum HOM05D003795 ORTHO05D004308 1.1e-96 358.6 726 44.2
TWI74G0163 Tripterygium wilfordii HOM05D003795 ORTHO05D004308 2.4e-96 357.5 747 43.4
Sed0021341 Sechium edule HOM05D003795 ORTHO05D004308 2.1e-95 354.4 805 42.0
PGSC0003DMG400019727 Solanum tuberosum HOM05D003795 ORTHO05D004308 2.1e-95 354.4 737 43.4
Lj2A509T28 Lonicera japonica HOM05D003795 ORTHO05D004308 5.1e-94 349.7 772 44.4
Peaxi162Scf00344g00199 Petunia axillaris HOM05D003795 ORTHO05D004308 6.7e-94 349.4 707 43.0
FAN18G0662 Fragaria x ananassa HOM05D003795 ORTHO05D004308 5.6e-93 346.3 767 42.8
FAN18G1276 Fragaria x ananassa HOM05D003795 ORTHO05D004308 5.6e-93 346.3 767 42.8
FvH4_5g39710 Fragaria vesca HOM05D003795 ORTHO05D004308 8.2e-92 342.4 771 42.7
TPR.G37433 Trifolium pratense HOM05D003795 ORTHO05D004308 1.4e-91 341.7 703 43.0
Nitab4.5_0000483g0170 Nicotiana tabacum HOM05D003795 ORTHO05D004308 3.1e-91 340.5 779 40.8
CAN.G809.93 Capsicum annuum HOM05D003795 ORTHO05D004308 1.2e-90 338.6 783 41.6
Nitab4.5_0012787g0030 Nicotiana tabacum HOM05D003795 ORTHO05D004308 1.2e-90 338.6 770 40.6
Potri.015G147900 Populus trichocarpa HOM05D003795 ORTHO05D004308 1.5e-90 338.2 773 42.4
Cpa.g.sc108.20 Carica papaya HOM05D003795 ORTHO05D004308 2.6e-90 337.4 778 41.3
Gohir.D11G177300 Gossypium hirsutum HOM05D003795 ORTHO05D004308 2.6e-90 337.4 720 43.1
FAN08G2134 Fragaria x ananassa HOM05D003795 ORTHO05D004308 5.8e-90 336.3 770 42.3
Psat5g144840 Pisum sativum HOM05D003795 ORTHO05D004308 1.3e-89 335.1 683 42.9
Sabra15G0156700 Salix brachista HOM05D003795 ORTHO05D004308 4.9e-89 333.2 767 40.0
Lalb_Chr18g0053951 Lupinus albus HOM05D003795 ORTHO05D004308 8.4e-89 332.4 697 44.0
Gorai.007G189400 Gossypium raimondii HOM05D003795 ORTHO05D004308 8.7e-86 322.4 721 42.0
CSS0049356 Camellia sinensis var. sinensis HOM05D003795 ORTHO05D004308 3.3e-85 320.5 780 41.5
RcHm_v2.0_Chr7g0242011 Rosa chinensis HOM05D003795 ORTHO05D004308 1.4e-83 315.1 771 39.8
TWI77G0024 Tripterygium wilfordii HOM05D003795 ORTHO05D004308 1.5e-82 311.6 751 41.1
Sopen02g026080 Solanum pennellii HOM05D003795 ORTHO05D004308 3.4e-82 310.5 788 39.1
Solyc02g081440.4 Solanum lycopersicum HOM05D003795 ORTHO05D004308 1.0e-81 308.9 798 39.3
DCAR_014135 Daucus carota HOM05D003795 ORTHO05D004308 4.6e-79 300.1 744 41.9
Cc07_g12620 Coffea canephora HOM05D003795 ORTHO05D004308 6.1e-79 299.7 792 38.8
Hma1.2p1_0085F.1_g043870 Hydrangea macrophylla HOM05D003795 ORTHO05D004308 8.8e-78 295.8 806 42.7
FAN04G0804 Fragaria x ananassa HOM05D003795 ORTHO05D004308 1.7e-76 291.6 697 40.6
Oeu060824.1 Olea europaea HOM05D003795 ORTHO05D004308 3.7e-76 290.4 589 45.2
Ciclev10011149m.g Citrus clementina HOM05D003795 ORTHO05D004308 1.8e-75 288.1 784 39.5
CANSAT78G1023 Cannabis sativa HOM05D003795 ORTHO05D004308 3.4e-74 283.9 758 40.8
PGR042G3398 Punica granatum HOM05D003795 ORTHO05D004308 3.2e-72 277.3 765 39.6
MSTRG.15619 Avicennia marina HOM05D003795 ORTHO05D004308 5.5e-72 276.6 746 40.1
vmacro20445 Vaccinium macrocarpon HOM05D003795 ORTHO05D004308 1.6e-71 275.0 761 38.2
Rhsim10G0186600 Rhododendron simsii HOM05D003795 ORTHO05D004308 2.1e-71 274.6 688 40.6
Nn4g24995 Nelumbo nucifera HOM05D003795 ORTHO05D004308 4.7e-71 273.5 663 40.3
PSO063G2224 Papaver somniferum HOM05D003795 ORTHO05D004308 7.9e-71 272.7 678 37.9
SGA_v2.0_scaffold199G41250 Striga asiatica HOM05D003795 ORTHO05D004308 1.4e-70 271.9 750 37.6
THA.LOC104805668 Tarenaya hassleriana HOM05D003795 ORTHO05D004308 3.0e-70 270.8 755 37.9
MSTRG.3665 Avicennia marina HOM05D003795 ORTHO05D004308 7.4e-69 266.2 758 38.7
Oeu012502.2 Olea europaea HOM05D003795 ORTHO05D004308 9.7e-69 265.8 743 37.8
COL.COLO4_13440 Corchorus olitorius HOM05D003795 ORTHO05D004308 2.2e-68 264.6 600 41.5
PSO782G2347 Papaver somniferum HOM05D003795 ORTHO05D004308 3.7e-68 263.8 653 39.4
Ah.04g162800 Amaranthus hybridus HOM05D003795 ORTHO05D004308 2.4e-67 261.2 744 37.0
Migut.K01203 Erythranthe guttata HOM05D003795 ORTHO05D004308 1.2e-66 258.8 746 38.3
GSVIVG01033197001 Vitis vinifera HOM05D003795 ORTHO05D004308 3.4e-66 257.3 758 37.7
Nn4g24993 Nelumbo nucifera HOM05D003795 ORTHO05D004308 2.9e-65 254.2 664 39.8
Lsat_1_v5_gn_2_72041 Lactuca sativa HOM05D003795 ORTHO05D004308 7.2e-64 249.6 702 39.5
SalBow5G4136 Salvia bowleyana HOM05D003795 ORTHO05D004308 1.2e-63 248.8 676 38.0
Oeu041416.1 Olea europaea HOM05D003795 ORTHO05D004308 1.1e-61 242.3 697 37.0
Hund22224 Selenicereus undatus HOM05D003795 ORTHO05D004308 1.5e-61 241.9 772 35.8
HanXRQChr14g0443551 Helianthus annuus HOM05D003795 ORTHO05D004308 1.3e-60 238.8 758 35.0
Hma1.2p1_0034F.1_g021500 Hydrangea macrophylla HOM05D003795 ORTHO05D004308 1.4e-59 235.3 765 36.1
MBI06_g17214_MAGBIO Magnolia biondii HOM05D003795 ORTHO05D004308 9.1e-59 232.6 638 36.8
Aqoxy3G04352 Aquilegia oxysepala HOM05D003795 ORTHO05D004308 1.6e-58 231.9 803 33.1
Ah.06g191370 Amaranthus hybridus HOM05D003795 ORTHO05D004308 2.1e-55 221.5 741 34.0
Eucgr.J01649 Eucalyptus grandis HOM05D003795 ORTHO05D004308 6.1e-55 219.9 483 40.4
Sc20g0000860 Simmondsia chinensis HOM05D003795 ORTHO05D004308 8.8e-54 216.1 746 35.9
Nitab4.5_0008083g0010 Nicotiana tabacum HOM05D003795 ORTHO05D004308 5.7e-53 213.4 734 34.3
AT5G37010 Arabidopsis thaliana HOM05D003795 ORTHO05D004308 1.1e-51 209.1 744 35.8
Aa31LG2G10060 Aethionema arabicum HOM05D003795 ORTHO05D004308 3.1e-51 207.6 761 35.6
unitig_0.g1678 Utricularia gibba HOM05D003795 ORTHO05D004308 5.9e-50 203.4 690 34.2
AL7G45860 Arabidopsis lyrata HOM05D003795 ORTHO05D004308 7.7e-50 203.0 732 35.0
CAN.G304.8 Capsicum annuum HOM05D003795 ORTHO05D004308 1.3e-49 202.2 673 34.6
HanXRQChr12g0365641 Helianthus annuus HOM05D003795 ORTHO05D004308 1.3e-49 202.2 683 35.0
Peaxi162Scf00784g00029 Petunia axillaris HOM05D003795 ORTHO05D004308 2.2e-49 201.4 730 34.7
Lalb_Chr10g0103891 Lupinus albus HOM05D003795 ORTHO05D004308 3.8e-49 200.7 404 45.5
Carub.0002s1153 Capsella rubella HOM05D003795 ORTHO05D004308 6.5e-49 199.9 641 34.8
Os04g0528600 Oryza sativa ssp. japonica HOM05D003795 ORTHO05D004308 6.5e-49 199.9 609 37.4
PGSC0003DMG402019715 Solanum tuberosum HOM05D003795 ORTHO05D004308 1.1e-48 199.1 270 52.2
MD12G1074700 Malus domestica HOM05D003795 ORTHO05D004308 1.5e-48 198.7 773 33.0
Thhalv10018248m.g Eutrema salsugineum HOM05D003795 ORTHO05D004308 1.9e-48 198.4 762 35.4
AL2G22840 Arabidopsis lyrata HOM05D003795 ORTHO05D004308 7.2e-48 196.4 635 36.4
Solyc02g036460.3 Solanum lycopersicum HOM05D003795 ORTHO05D004308 9.4e-48 196.1 676 34.0
CARHR216000 Cardamine hirsuta HOM05D003795 ORTHO05D004308 1.6e-47 195.3 760 32.6
BcaB06g27061 Brassica carinata HOM05D003795 ORTHO05D004308 8.0e-47 193.0 665 33.7
BcaC02g09547 Brassica carinata HOM05D003795 ORTHO05D004308 8.0e-47 193.0 691 35.6
Sp7g05490 Schrenkiella parvula HOM05D003795 ORTHO05D004308 1.0e-46 192.6 739 35.2
Nitab4.5_0002297g0070 Nicotiana tabacum HOM05D003795 ORTHO05D004308 1.4e-46 192.2 724 33.3
EL10Ac4g08850 Beta vulgaris HOM05D003795 ORTHO05D004308 2.3e-46 191.4 756 34.0
Sopen02g011820 Solanum pennellii HOM05D003795 ORTHO05D004308 2.3e-46 191.4 703 33.3
AT1G65710 Arabidopsis thaliana HOM05D003795 ORTHO05D004308 3.0e-46 191.0 635 35.6
Thhalv10018468m.g Eutrema salsugineum HOM05D003795 ORTHO05D004308 5.2e-46 190.3 646 32.5
unitig_748.g7017 Utricularia gibba HOM05D003795 ORTHO05D004308 5.2e-46 190.3 656 35.5
ECA238G3337 Erigeron canadensis HOM05D003795 ORTHO05D004308 1.5e-45 188.7 677 34.6
Sabra16G0322500 Salix brachista HOM05D003795 ORTHO05D004308 1.5e-45 188.7 346 46.0
Atru.chr1.2190 Acer truncatum HOM05D003795 ORTHO05D004308 3.4e-45 187.6 720 34.2
C04p43990 Brassica napus HOM05D003795 ORTHO05D004308 1.3e-44 185.7 686 35.4
Carub.0007s3228 Capsella rubella HOM05D003795 ORTHO05D004308 2.2e-44 184.9 677 34.0
CARHR057540 Cardamine hirsuta HOM05D003795 ORTHO05D004308 2.2e-44 184.9 624 34.8
Zm00001eb427110 Zea mays HOM05D003795 ORTHO05D004308 2.8e-44 184.5 600 34.8
BolC4t25981H Brassica oleracea HOM05D003795 ORTHO05D004308 1.8e-43 181.8 683 35.1
PGSC0003DMG400021472 Solanum tuberosum HOM05D003795 ORTHO05D004308 4.1e-43 180.6 701 34.4
VMungo1215G2457 Vigna mungo HOM05D003795 ORTHO05D004308 1.7e-41 175.3 349 44.7
Zm00001eb075920 Zea mays HOM05D003795 ORTHO05D004308 5.0e-41 173.7 597 34.5
Aqoxy2G03712 Aquilegia oxysepala HOM05D003795 ORTHO05D004308 1.1e-40 172.6 287 45.3
Dinv19094 Davidia involucrata HOM05D003795 ORTHO05D004308 1.5e-40 172.2 326 44.2
HPP92_013140 Vanilla planifolia HOM05D003795 ORTHO05D004308 1.9e-40 171.8 670 33.9
Sp5g20650 Schrenkiella parvula HOM05D003795 ORTHO05D004308 9.5e-40 169.5 671 31.3
Aa31LG9G17690 Aethionema arabicum HOM05D003795 ORTHO05D004308 8.0e-39 166.4 742 32.9
CDE08G0767 Ceratophyllum demersum HOM05D003795 ORTHO05D004308 5.7e-37 160.2 684 37.9
TAR629G1700 Trochodendron aralioides HOM05D003795 ORTHO05D004308 9.8e-37 159.5 481 43.9
A04p10490 Brassica napus HOM05D003795 ORTHO05D004308 5.6e-32 143.7 412 35.7
CDE04G0398 Ceratophyllum demersum HOM05D003795 ORTHO05D004308 2.8e-31 141.4 812 31.3
Actinidia22883 Actinidia chinensis HOM05D003795 ORTHO05D004308 4.7e-31 140.6 729 30.7
Zm00001eb185660 Zea mays HOM05D003795 ORTHO05D004308 4.7e-31 140.6 624 32.4
unitig_748.g8624 Utricularia gibba HOM05D003795 ORTHO05D004308 4.0e-30 137.5 603 31.0
Peaxi162Scf00116g00915 Petunia axillaris HOM05D004744 ORTHO05D005655 5.2e-30 137.1 227 44.9
AUR62017269 Chenopodium quinoa HOM05D003795 ORTHO05D004308 3.4e-29 134.4 507 33.9
Actinidia32996 Actinidia chinensis HOM05D003795 ORTHO05D004308 1.3e-28 132.5 372 41.4
VMungo1383G0923 Vigna mungo HOM05D003795 ORTHO05D004308 1.7e-28 132.1 153 57.5
Lalb_Chr10g0103871 Lupinus albus HOM05D003795 ORTHO05D004308 2.4e-27 128.3 122 68.0
AUR62010626 Chenopodium quinoa HOM05D003795 ORTHO05D004308 9.5e-24 116.3 168 48.8
A08p00830 Brassica napus HOM05D003795 ORTHO05D004308 3.4e-21 107.8 516 29.5
BolC3t21550H Brassica oleracea HOM05D003795 ORTHO05D004308 3.4e-21 107.8 510 29.8
Prupe.7G058700 Prunus persica HOM05D003795 ORTHO05D004308 7.5e-21 106.7 343 36.4
Prupe.7G058800 Prunus persica HOM05D003795 ORTHO05D004308 3.2e-19 101.3 133 54.9
BcaB04g16989 Brassica carinata HOM05D003795 ORTHO05D004308 4.1e-19 100.9 534 30.1
CDE07G0419 Ceratophyllum demersum HOM05D003795 ORTHO05D004308 5.1e-17 94.0 600 26.8
Oeu012503.1 Olea europaea HOM05D003795 ORTHO05D004308 2.5e-16 91.7 306 33.7
BcaC01g01477 Brassica carinata HOM05D003795 ORTHO05D004308 9.5e-16 89.7 638 27.9
C03p92420 Brassica napus HOM05D003795 ORTHO05D004308 9.5e-16 89.7 638 27.9
Psat0ss9816g0080 Pisum sativum HOM05D004417 ORTHO05D005528 1.6e-15 89.0 113 58.4
Psat0ss9816g0160 Pisum sativum HOM05D004417 ORTHO05D005528 2.1e-15 88.6 128 53.9
Os02g0638200 Oryza sativa ssp. japonica HOM05D003795 ORTHO05D004308 3.6e-15 87.8 232 37.5
AUR62010625 Chenopodium quinoa HOM05D003795 ORTHO05D004308 5.2e-14 84.0 147 49.0
Sabra16G0322400 Salix brachista HOM05D003795 ORTHO05D004308 1.2e-13 82.8 141 43.3
Lsat_1_v5_gn_8_114961 Lactuca sativa HOM05D003795 ORTHO05D004308 2.6e-13 81.6 571 29.9
MD14G1072800 Malus domestica HOM05D003795 ORTHO05D004308 1.7e-12 79.0 102 53.9
BraA08t32141Z Brassica rapa HOM05D003795 ORTHO05D004308 1.1e-11 76.3 514 28.0
AL6G17260 Arabidopsis lyrata HOM05D003795 ORTHO05D004308 1.4e-11 75.9 192 33.3
HanXRQChr09g0258951 Helianthus annuus HOM05D003795 ORTHO05D004308 4.1e-11 74.3 95 49.5
ATR0124G054 Amborella trichopoda HOM05D003795 ORTHO05D004308 6.0e-10 70.5 538 27.5
TAR629G2443 Trochodendron aralioides HOM05D003795 ORTHO05D004308 2.5e-08 65.1 64 60.9
Psat7g004680 Pisum sativum HOM05D003795 ORTHO05D004308 2.1e-07 62.0 89 51.7
Aa31LG1G18490 Aethionema arabicum HOM05D003795 ORTHO05D004308 3.6e-07 61.2 61 62.3
BcaB04g20778 Brassica carinata HOM05D011073 ORTHO05D013800 3.6e-07 61.2 168 41.1
BcaB05g24123 Brassica carinata HOM05D003795 ORTHO05D004308 6.2e-07 60.5 360 28.3


User provided reference genes

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