Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.14G207800 Glycine max HOM05D004245 ORTHO05D004783 4.6e-115 417.9 213 100.0
Phvul.008G243100 Phaseolus vulgaris HOM05D004245 ORTHO05D004783 7.1e-92 340.9 217 84.3
VMungo0647G1970 Vigna mungo HOM05D004245 ORTHO05D004783 1.9e-84 316.2 206 82.5
Lalb_Chr10g0103901 Lupinus albus HOM05D004245 ORTHO05D004783 2.9e-77 292.4 218 77.1
QL02p008145 Quercus lobata HOM05D004245 ORTHO05D004783 1.4e-71 273.5 215 70.2
QL02p008410 Quercus lobata HOM05D004245 ORTHO05D004783 6.9e-71 271.2 215 70.7
FvH4_2g39911 Fragaria vesca HOM05D004245 ORTHO05D004783 1.3e-69 266.9 204 74.0
MD15G1031300 Malus domestica HOM05D004245 ORTHO05D004783 5.0e-69 265.0 175 78.9
RcHm_v2.0_Chr6g0300871 Rosa chinensis HOM05D004245 ORTHO05D004783 6.5e-69 264.6 213 70.9
Oeu029863.1 Olea europaea HOM05D004245 ORTHO05D004783 8.5e-69 264.2 164 82.9
Lalb_Chr17g0345751 Lupinus albus HOM05D004245 ORTHO05D004783 3.2e-68 262.3 207 72.5
HanXRQChr05g0151891 Helianthus annuus HOM05D004245 ORTHO05D004783 9.4e-68 260.8 218 69.7
TWI56G0048 Tripterygium wilfordii HOM05D004245 ORTHO05D004783 1.2e-67 260.4 183 76.0
Oeu049959.1 Olea europaea HOM05D004245 ORTHO05D004783 3.6e-67 258.8 180 75.6
Oeu049960.1 Olea europaea HOM05D004245 ORTHO05D004783 3.6e-67 258.8 180 75.6
Prupe.1G380600 Prunus persica HOM05D004245 ORTHO05D004783 4.6e-67 258.5 188 74.5
THA.LOC104813208 Tarenaya hassleriana HOM05D004245 ORTHO05D004783 4.6e-67 258.5 161 82.6
PGR031G3519 Punica granatum HOM05D004245 ORTHO05D004783 7.9e-67 257.7 216 66.7
Ciclev10002428m.g Citrus clementina HOM05D004245 ORTHO05D004783 1.0e-66 257.3 206 69.9
Dinv36073 Davidia involucrata HOM05D004245 ORTHO05D004783 1.0e-66 257.3 212 69.8
Oeu056187.1 Olea europaea HOM05D004245 ORTHO05D004783 1.0e-66 257.3 176 77.3
CANSAT11G0204 Cannabis sativa HOM05D004245 ORTHO05D004783 1.8e-66 256.5 212 68.9
MD08G1034400 Malus domestica HOM05D004245 ORTHO05D004783 2.3e-66 256.1 201 69.7
Manes.18G027901 Manihot esculenta HOM05D004245 ORTHO05D004783 3.0e-66 255.8 179 76.0
AT3G46940 Arabidopsis thaliana HOM05D004245 ORTHO05D004783 3.9e-66 255.4 164 79.3
MSTRG.1283 Avicennia marina HOM05D004245 ORTHO05D004783 3.9e-66 255.4 193 68.9
Eucgr.F01560 Eucalyptus grandis HOM05D004245 ORTHO05D004783 3.9e-66 255.4 166 81.9
AL5G26160 Arabidopsis lyrata HOM05D004245 ORTHO05D004783 6.7e-66 254.6 171 76.6
Ciclev10009684m.g Citrus clementina HOM05D004245 ORTHO05D004783 6.7e-66 254.6 169 79.9
GSVIVG01009696001 Vitis vinifera HOM05D004245 ORTHO05D004783 6.7e-66 254.6 179 76.5
CARHR155580 Cardamine hirsuta HOM05D004245 ORTHO05D004783 8.8e-66 254.2 210 65.7
MSTRG.22299 Avicennia marina HOM05D004245 ORTHO05D004783 1.1e-65 253.8 165 79.4
Sp5g14800 Schrenkiella parvula HOM05D004245 ORTHO05D004783 2.5e-65 252.7 161 79.5
TAR381G1372 Trochodendron aralioides HOM05D004245 ORTHO05D004783 2.5e-65 252.7 181 75.1
Cpa.g.sc36.67 Carica papaya HOM05D004245 ORTHO05D004783 3.3e-65 252.3 164 83.5
Thecc.08G025300 Theobroma cacao HOM05D004245 ORTHO05D004783 5.7e-65 251.5 164 79.9
TWI12G0235 Tripterygium wilfordii HOM05D004245 ORTHO05D004783 5.7e-65 251.5 164 81.1
Aqoxy2G01756 Aquilegia oxysepala HOM05D004245 ORTHO05D004783 1.3e-64 250.4 168 79.2
AUR62027309 Chenopodium quinoa HOM05D004245 ORTHO05D004783 1.3e-64 250.4 163 79.8
Sc02g0006240 Simmondsia chinensis HOM05D004245 ORTHO05D004783 1.3e-64 250.4 198 70.2
Gohir.D05G198000 Gossypium hirsutum HOM05D004245 ORTHO05D004783 1.7e-64 250.0 164 79.3
Nn5g29570 Nelumbo nucifera HOM05D004245 ORTHO05D004783 1.7e-64 250.0 170 77.6
Atru.chr13.1763 Acer truncatum HOM05D004245 ORTHO05D004783 2.8e-64 249.2 167 79.0
A06p20620 Brassica napus HOM05D004245 ORTHO05D004783 2.8e-64 249.2 198 68.7
Gohir.A05G194800 Gossypium hirsutum HOM05D004245 ORTHO05D004783 2.8e-64 249.2 164 79.3
TAR365G0431 Trochodendron aralioides HOM05D004245 ORTHO05D004783 2.8e-64 249.2 164 79.9
Gorai.009G203100 Gossypium raimondii HOM05D004245 ORTHO05D004783 3.7e-64 248.8 164 78.7
Lj4A41T61 Lonicera japonica HOM05D004245 ORTHO05D004783 3.7e-64 248.8 184 73.9
Actinidia29827 Actinidia chinensis HOM05D004245 ORTHO05D004783 4.8e-64 248.4 182 73.6
Aa31LG4G15890 Aethionema arabicum HOM05D004245 ORTHO05D004783 4.8e-64 248.4 161 78.9
C03p71110 Brassica napus HOM05D004245 ORTHO05D004783 4.8e-64 248.4 194 69.6
BolC3t19396H Brassica oleracea HOM05D004245 ORTHO05D004783 4.8e-64 248.4 194 69.6
Carub.0005s1316 Capsella rubella HOM05D004245 ORTHO05D004783 4.8e-64 248.4 170 74.1
PSO832G4589 Papaver somniferum HOM05D004245 ORTHO05D004783 6.3e-64 248.1 170 76.5
MELO3C010935.2 Cucumis melo HOM05D004245 ORTHO05D004783 8.2e-64 247.7 212 69.3
Glyma.18G048400 Glycine max HOM05D004245 ORTHO05D004783 8.2e-64 247.7 150 86.7
Cc00_g32610 Coffea canephora HOM05D004245 ORTHO05D004783 1.1e-63 247.3 178 76.4
Thhalv10011147m.g Eutrema salsugineum HOM05D004245 ORTHO05D004783 1.1e-63 247.3 162 78.4
HanXRQChr08g0223611 Helianthus annuus HOM05D004245 ORTHO05D004783 1.4e-63 246.9 200 68.5
BraA06t25141Z Brassica rapa HOM05D004245 ORTHO05D004783 1.8e-63 246.5 199 68.8
Cc10_g03000 Coffea canephora HOM05D004245 ORTHO05D004783 1.8e-63 246.5 177 72.3
CsaV3_2G028630 Cucumis sativus L. HOM05D004245 ORTHO05D004783 1.8e-63 246.5 212 68.4
Medtr3g063110 Medicago truncatula HOM05D004245 ORTHO05D004783 1.8e-63 246.5 150 84.7
Psat5g146640 Pisum sativum HOM05D004245 ORTHO05D004783 1.8e-63 246.5 151 84.8
Solyc01g100030.5.1 Solanum lycopersicum HOM05D004245 ORTHO05D004783 1.8e-63 246.5 204 67.2
EL10Ac5g11904 Beta vulgaris HOM05D004245 ORTHO05D004783 3.1e-63 245.7 163 77.9
Manes.05G161000 Manihot esculenta HOM05D004245 ORTHO05D004783 3.1e-63 245.7 171 78.4
GSVIVG01037336001 Vitis vinifera HOM05D004245 ORTHO05D004783 3.1e-63 245.7 179 76.0
CAN.G1273.28 Capsicum annuum HOM05D004245 ORTHO05D004783 5.3e-63 245.0 162 77.2
ECA246G2445 Erigeron canadensis HOM05D004245 ORTHO05D004783 5.3e-63 245.0 176 73.3
Atru.chr13.494 Acer truncatum HOM05D004245 ORTHO05D004783 6.9e-63 244.6 144 87.5
COL.COLO4_26330 Corchorus olitorius HOM05D004245 ORTHO05D004783 6.9e-63 244.6 200 67.0
Potri.002G261900 Populus trichocarpa HOM05D004245 ORTHO05D004783 6.9e-63 244.6 218 64.7
Duzib116G0455 Durio zibethinus HOM05D004245 ORTHO05D004783 9.1e-63 244.2 164 78.0
Ca_15096_v3 Cicer arietinum L. HOM05D004245 ORTHO05D004783 1.2e-62 243.8 141 86.5
Sopen01g041550 Solanum pennellii HOM05D004245 ORTHO05D004783 1.2e-62 243.8 147 83.0
PGSC0003DMG400022502 Solanum tuberosum HOM05D004245 ORTHO05D004783 1.2e-62 243.8 147 83.0
TPR.G37404 Trifolium pratense HOM05D004245 ORTHO05D004783 1.5e-62 243.4 159 78.6
Ah.12g056070 Amaranthus hybridus HOM05D004245 ORTHO05D004783 4.5e-62 241.9 211 64.5
TWI36G0248 Tripterygium wilfordii HOM05D004245 ORTHO05D004783 5.9e-62 241.5 158 79.7
AUR62007424 Chenopodium quinoa HOM05D004245 ORTHO05D004783 7.7e-62 241.1 163 79.1
Sopen01g043550 Solanum pennellii HOM05D004245 ORTHO05D004783 7.7e-62 241.1 163 77.3
TPR.G19056 Trifolium pratense HOM05D004245 ORTHO05D004783 7.7e-62 241.1 150 82.0
Duzib093G0228 Durio zibethinus HOM05D004245 ORTHO05D004783 1.0e-61 240.7 164 76.8
PGSC0003DMG400024725 Solanum tuberosum HOM05D004245 ORTHO05D004783 1.0e-61 240.7 163 77.3
CiPaw.15G077400 Carya illinoinensis HOM05D004245 ORTHO05D004783 1.7e-61 240.0 170 73.5
DCAR_020361 Daucus carota HOM05D004245 ORTHO05D004783 1.7e-61 240.0 150 81.3
Nn1g05030 Nelumbo nucifera HOM05D004245 ORTHO05D004783 1.7e-61 240.0 154 81.2
Migut.N00497 Erythranthe guttata HOM05D004245 ORTHO05D004783 2.9e-61 239.2 153 80.4
ClCG08G015180 Citrullus lanatus HOM05D004245 ORTHO05D004783 3.8e-61 238.8 161 77.0
Actinidia38010 Actinidia chinensis HOM05D004245 ORTHO05D004783 8.5e-61 237.7 180 70.6
Actinidia22552 Actinidia chinensis HOM05D004245 ORTHO05D004783 2.5e-60 236.1 207 67.1
CAN.G134.178 Capsicum annuum HOM05D004245 ORTHO05D004783 5.5e-60 235.0 148 80.4
Pp3c16_25660 Physcomitrium patens HOM05D004245 ORTHO05D004783 9.4e-60 234.2 160 75.0
Rhsim07G0237700 Rhododendron simsii HOM05D004245 ORTHO05D004783 9.4e-60 234.2 232 61.2
HPP92_000905 Vanilla planifolia HOM05D004245 ORTHO05D004783 1.2e-59 233.8 187 67.9
CDE12G0639 Ceratophyllum demersum HOM05D004245 ORTHO05D004783 6.1e-59 231.5 172 69.2
PSO591G0217 Papaver somniferum HOM05D004245 ORTHO05D004783 1.0e-58 230.7 169 73.4
MBI16_g37698_MAGBIO Magnolia biondii HOM05D004245 ORTHO05D004783 2.3e-58 229.6 177 72.3
MBI16_g37752_MAGBIO Magnolia biondii HOM05D004245 ORTHO05D004783 2.3e-58 229.6 162 73.5
MD08G1034500 Malus domestica HOM05D004245 ORTHO05D004783 2.3e-58 229.6 174 71.3
ATR0124G052 Amborella trichopoda HOM05D004245 ORTHO05D004783 3.0e-58 229.2 218 62.8
Sabra04G0142000 Salix brachista HOM05D004298 ORTHO05D006236 3.0e-58 229.2 228 59.2
Rhsim06G0034500 Rhododendron simsii HOM05D004245 ORTHO05D004783 3.9e-58 228.8 178 71.3
SEGI_17618 Sequoiadendron giganteum HOM05D004245 ORTHO05D004783 2.6e-57 226.1 165 70.3
CDE04G3793 Ceratophyllum demersum HOM05D004245 ORTHO05D004783 4.4e-57 225.3 212 59.4
Zm00001eb052270 Zea mays HOM05D004245 ORTHO05D004783 4.4e-57 225.3 167 73.1
PSO764G0231 Papaver somniferum HOM05D004245 ORTHO05D004783 2.8e-56 222.6 176 65.9
SEGI_12681 Sequoiadendron giganteum HOM05D004245 ORTHO05D004783 1.1e-55 220.7 168 71.4
Mapoly0133s0010 Marchantia polymorpha HOM05D004245 ORTHO05D004783 1.8e-55 219.9 174 67.8
SMO146G0275 Selaginella moellendorffii HOM05D004245 ORTHO05D004783 4.1e-55 218.8 139 79.1
Solyc01g097970.4 Solanum lycopersicum HOM05D004245 ORTHO05D004783 2.0e-54 216.5 139 79.1
AagrBONN_evm.TU.Sc2ySwM_117.1092 Anthoceros agrestis HOM05D004245 ORTHO05D004783 1.5e-52 210.3 167 63.5
Sabra02G0198600 Salix brachista HOM05D004245 ORTHO05D004783 4.2e-52 208.8 168 66.7
HPP92_000939 Vanilla planifolia HOM05D004245 ORTHO05D004783 5.5e-52 208.4 177 63.3
Os03g0669100 Oryza sativa ssp. japonica HOM05D004245 ORTHO05D004783 1.2e-51 207.2 135 80.0
CBR_g37457 Chara braunii HOM05D004245 ORTHO05D004783 3.0e-50 202.6 144 72.9
MCO05G374 Micromonas commoda HOM05D004245 ORTHO05D004783 6.3e-48 194.9 141 71.6
Cre16.g667850 Chlamydomonas reinhardtii HOM05D004245 ORTHO05D004783 4.2e-44 182.2 139 66.9
Cfa018144 Carpinus fangiana HOM05D004245 ORTHO05D004783 9.8e-41 171.0 166 61.4
PRCOL_00002276 Prasinoderma coloniale HOM05D004245 ORTHO05D004783 7.0e-39 164.9 140 61.4
Cc10_g02990 Coffea canephora HOM05D004245 ORTHO05D004783 6.5e-37 158.3 120 66.7
Nitab4.5_0004954g0010 Nicotiana tabacum HOM05D004245 ORTHO05D004783 5.5e-36 155.2 125 61.6
Peaxi162Scf00690g00216 Petunia axillaris HOM05D004245 ORTHO05D004783 9.4e-36 154.5 134 60.4
CAN.G1226.1 Capsicum annuum HOM05D004245 ORTHO05D004783 2.7e-35 152.9 135 61.5
PGSC0003DMG400005159 Solanum tuberosum HOM05D004245 ORTHO05D004783 3.6e-35 152.5 135 60.0
unitig_85.g27241 Utricularia gibba HOM05D004245 ORTHO05D004783 5.2e-34 148.7 83 88.0
Solyc04g080250.3 Solanum lycopersicum HOM05D004245 ORTHO05D004783 8.8e-34 147.9 135 59.3
CBR_g21266 Chara braunii HOM05D004245 ORTHO05D004783 6.3e-32 141.7 138 56.5
QL02p008415 Quercus lobata HOM05D000526 ORTHO05D004783 9.2e-31 137.9 113 68.1
unitig_578.g16734 Utricularia gibba HOM05D004245 ORTHO05D004783 4.5e-30 135.6 128 60.9
Oeu029862.1 Olea europaea HOM05D004245 ORTHO05D004783 1.3e-29 134.0 100 65.0
SHI03308 Sapria himalayana HOM05D004245 ORTHO05D004783 1.9e-28 130.2 81 80.2
CBR_g21272 Chara braunii HOM05D004245 ORTHO05D004783 4.3e-28 129.0 138 50.7
SGA_v2.0_scaffold326G48710 Striga asiatica HOM05D004245 ORTHO05D004783 1.2e-25 120.9 106 63.2
Cfa018886 Carpinus fangiana HOM05D004245 ORTHO05D004783 1.5e-25 120.6 134 58.2
Atru.chr6.1642 Acer truncatum HOM05D004245 ORTHO05D004783 4.4e-25 119.0 82 69.5
Sopen04g033830 Solanum pennellii HOM05D004245 ORTHO05D004783 4.9e-24 115.5 86 67.4
vmacro04520 Vaccinium macrocarpon HOM05D004245 ORTHO05D004783 4.9e-24 115.5 93 71.0
Hund11091 Selenicereus undatus HOM05D004245 ORTHO05D004783 6.4e-24 115.2 111 63.1
DCAR_020970 Daucus carota HOM05D004245 ORTHO05D004783 1.6e-22 110.5 97 63.9
SHI09478 Sapria himalayana HOM05D004245 ORTHO05D004783 1.0e-21 107.8 70 74.3
Lsat_1_v5_gn_5_29181 Lactuca sativa HOM05D004245 ORTHO05D004783 3.0e-21 106.3 123 50.4
Lsat_1_v5_gn_8_78860 Lactuca sativa HOM05D004245 ORTHO05D004783 6.6e-21 105.1 120 50.8
Nitab4.5_0006179g0050 Nicotiana tabacum HOM05D004245 ORTHO05D004783 6.6e-21 105.1 98 60.2
Peaxi162Scf00037g01715 Petunia axillaris HOM05D004245 ORTHO05D004783 1.1e-20 104.4 81 71.6
Sed0016726 Sechium edule HOM05D004245 ORTHO05D004783 1.9e-20 103.6 128 53.1
Nitab4.5_0002612g0110 Nicotiana tabacum HOM05D004245 ORTHO05D004783 4.3e-20 102.4 80 71.2
Nitab4.5_0002361g0180 Nicotiana tabacum HOM05D004245 ORTHO05D004783 1.4e-18 97.4 58 82.8
Atru.chr6.1643 Acer truncatum HOM05D004245 ORTHO05D004783 3.1e-18 96.3 69 68.1
Peaxi162Scf00225g00127 Petunia axillaris HOM05D004245 ORTHO05D004783 3.1e-18 96.3 75 66.7
Nitab4.5_0002840g0080 Nicotiana tabacum HOM05D004245 ORTHO05D004783 2.6e-17 93.2 68 72.1
Atru.chr2.1957 Acer truncatum HOM05D004245 ORTHO05D004783 3.7e-16 89.4 56 73.2
Atru.chr13.1771 Acer truncatum HOM05D004245 ORTHO05D004783 2.7e-14 83.2 66 66.7
vmacro21634 Vaccinium macrocarpon HOM05D004245 ORTHO05D004783 2.7e-14 83.2 151 43.7
SHI20747 Sapria himalayana HOM05D003927 ORTHO05D004905 4.6e-14 82.4 92 51.1
FAN27G0770 Fragaria x ananassa HOM05D004245 ORTHO05D004783 7.8e-14 81.6 53 81.1
FAN15G2450 Fragaria x ananassa HOM05D004245 ORTHO05D004783 1.0e-13 81.3 84 61.9
Dinv03456 Davidia involucrata HOM05D004245 ORTHO05D004783 1.4e-10 70.9 105 45.7
Lsat_1_v5_gn_0_32861 Lactuca sativa HOM05D031264 ORTHO05D004783 1.8e-10 70.5 127 35.4
COL.COLO4_04917 Corchorus olitorius HOM05D004245 ORTHO05D004783 1.5e-09 67.4 46 76.1
SalBow8G3107 Salvia bowleyana HOM05D004245 ORTHO05D004783 3.4e-09 66.2 80 52.5
Eucgr.C01497 Eucalyptus grandis HOM05D004245 ORTHO05D004783 3.7e-08 62.8 45 73.3
arahy.Tifrunner.gnm1.ann1.8Q4PR4 Arachis hypogaea HOM05D004245 ORTHO05D004783 1.4e-07 60.8 38 86.8
Nitab4.5_0000110g0590 Nicotiana tabacum HOM05D004245 ORTHO05D004783 2.4e-07 60.1 128 32.8
Actinidia15321 Actinidia chinensis HOM05D004245 ORTHO05D004783 3.2e-07 59.7 58 58.6


User provided reference genes

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