Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.14G202500 Glycine max HOM05D005086 ORTHO05D005980 8.5e-69 263.5 126 100.0
Glyma.14G120700 Glycine max HOM05D005086 ORTHO05D005980 6.4e-32 141.0 76 85.5
Sabra05G0143000 Salix brachista HOM05D005086 ORTHO05D005980 1.9e-12 76.3 180 33.3
Manes.18G086500 Manihot esculenta HOM05D005086 ORTHO05D005980 1.5e-09 66.6 180 30.6
Potri.002G072300 Populus trichocarpa HOM05D005086 ORTHO05D005980 2.0e-09 66.2 45 73.3
Potri.005G187400 Populus trichocarpa HOM05D005086 ORTHO05D005980 2.0e-09 66.2 45 73.3
Sabra02G0056900 Salix brachista HOM05D005086 ORTHO05D005980 2.6e-09 65.9 47 68.1
VMungo0647G0181 Vigna mungo HOM05D005086 ORTHO05D005980 9.9e-09 63.9 45 73.3
DCAR_001547 Daucus carota HOM05D005086 ORTHO05D005980 1.3e-08 63.5 175 31.4
Phvul.001G063800 Phaseolus vulgaris HOM05D005086 ORTHO05D005980 2.2e-08 62.8 45 68.9
RcHm_v2.0_Chr1g0331511 Rosa chinensis HOM05D005086 ORTHO05D005980 2.2e-08 62.8 46 69.6
RcHm_v2.0_Chr6g0277351 Rosa chinensis HOM05D005086 ORTHO05D005980 2.2e-08 62.8 46 69.6
arahy.Tifrunner.gnm1.ann1.AQ25H9 Arachis hypogaea HOM05D005086 ORTHO05D005980 3.8e-08 62.0 45 68.9
MD05G1012600 Malus domestica HOM05D005086 ORTHO05D005980 3.8e-08 62.0 45 71.1
Prupe.8G017900 Prunus persica HOM05D005086 ORTHO05D005980 3.8e-08 62.0 45 71.1
Ca_12658_v3 Cicer arietinum L. HOM05D005086 ORTHO05D005980 4.9e-08 61.6 45 71.1
Medtr1g029350 Medicago truncatula HOM05D005086 ORTHO05D005980 4.9e-08 61.6 45 71.1
arahy.Tifrunner.gnm1.ann1.1CL4KB Arachis hypogaea HOM05D005086 ORTHO05D005980 8.4e-08 60.8 45 66.7
Cc10_g12980 Coffea canephora HOM05D005086 ORTHO05D005980 8.4e-08 60.8 228 27.2
FvH4_2g14790 Fragaria vesca HOM05D005086 ORTHO05D005980 8.4e-08 60.8 45 68.9
FAN20G2551 Fragaria x ananassa HOM05D005086 ORTHO05D005980 8.4e-08 60.8 47 66.0
FAN24G0253 Fragaria x ananassa HOM05D006773 ORTHO05D005980 8.4e-08 60.8 45 68.9
Ah.05g167500 Amaranthus hybridus HOM05D005086 ORTHO05D005980 1.1e-07 60.5 63 49.2
Lj1g0013822 Lotus japonicus HOM05D005086 ORTHO05D005980 1.1e-07 60.5 45 68.9
Lj2g0027047 Lotus japonicus HOM05D005086 ORTHO05D005980 1.1e-07 60.5 45 68.9
SalBow7G2754 Salvia bowleyana HOM05D005086 ORTHO05D005980 1.1e-07 60.5 46 67.4
PGSC0003DMG400024814 Solanum tuberosum HOM05D005086 ORTHO05D005980 1.1e-07 60.5 45 68.9
TPR.G33329 Trifolium pratense HOM05D005086 ORTHO05D005980 1.1e-07 60.5 45 68.9
CANSAT80G0700 Cannabis sativa HOM05D005086 ORTHO05D005980 1.4e-07 60.1 45 68.9
Duzib116G0169 Durio zibethinus HOM05D005086 ORTHO05D005980 1.4e-07 60.1 209 28.2
Solyc04g064680.4 Solanum lycopersicum HOM05D005086 ORTHO05D005980 1.4e-07 60.1 45 66.7
Sopen04g026640 Solanum pennellii HOM05D005086 ORTHO05D005980 1.4e-07 60.1 45 66.7
MSTRG.1377 Avicennia marina HOM05D005086 ORTHO05D005980 1.9e-07 59.7 45 66.7
Glyma.14G202400 Glycine max HOM05D005086 ORTHO05D005980 1.9e-07 59.7 45 68.9
Lalb_Chr20g0118701 Lupinus albus HOM05D005086 ORTHO05D005980 1.9e-07 59.7 45 66.7
Actinidia15165 Actinidia chinensis HOM05D005086 ORTHO05D005980 2.4e-07 59.3 45 64.4
Aqoxy6G00340 Aquilegia oxysepala HOM05D005086 ORTHO05D005980 2.4e-07 59.3 45 66.7
EL10As10g23958 Beta vulgaris HOM05D005086 ORTHO05D005980 2.4e-07 59.3 45 64.4
Nn1g06227 Nelumbo nucifera HOM05D005086 ORTHO05D005980 2.4e-07 59.3 45 66.7
Nitab4.5_0000445g0110 Nicotiana tabacum HOM05D005086 ORTHO05D005980 2.4e-07 59.3 45 66.7
Nitab4.5_0004095g0020 Nicotiana tabacum HOM05D005086 ORTHO05D005980 2.4e-07 59.3 45 66.7
Peaxi162Scf00263g00031 Petunia axillaris HOM05D005086 ORTHO05D005980 2.4e-07 59.3 45 66.7
SEGI_35480 Sequoiadendron giganteum HOM05D005086 ORTHO05D005980 2.4e-07 59.3 46 63.0
CSS0017168 Camellia sinensis var. sinensis HOM05D005086 ORTHO05D005980 3.2e-07 58.9 228 25.9
Cfa018373 Carpinus fangiana HOM05D005086 ORTHO05D005980 3.2e-07 58.9 45 66.7
Haze_17696 Corylus avellana HOM05D006773 ORTHO05D005980 3.2e-07 58.9 45 66.7
Oeu046001.1 Olea europaea HOM05D005086 ORTHO05D005980 3.2e-07 58.9 45 66.7
AUR62030231 Chenopodium quinoa HOM05D005086 ORTHO05D005980 4.2e-07 58.5 47 59.6
Migut.C01051 Erythranthe guttata HOM05D005086 ORTHO05D005980 4.2e-07 58.5 45 62.2
MD10G1012500 Malus domestica HOM05D005086 ORTHO05D005980 4.2e-07 58.5 45 66.7
Cpa.g.sc49.73 Carica papaya HOM05D005086 ORTHO05D005980 5.5e-07 58.2 45 66.7
PGR044G0933 Punica granatum HOM05D005086 ORTHO05D005980 5.5e-07 58.2 45 64.4
Carub.0001s2088 Capsella rubella HOM05D005086 ORTHO05D005980 7.1e-07 57.8 46 60.9
AUR62027615 Chenopodium quinoa HOM05D005086 ORTHO05D005980 7.1e-07 57.8 45 62.2
MELO3C008415.2 Cucumis melo HOM05D005086 ORTHO05D005980 7.1e-07 57.8 45 64.4
FAN15G0455 Fragaria x ananassa HOM05D005086 ORTHO05D005980 7.1e-07 57.8 47 61.7
Lsat_1_v5_gn_6_96840 Lactuca sativa HOM05D005086 ORTHO05D005980 7.1e-07 57.8 45 60.0
Sed0007666 Sechium edule HOM05D005086 ORTHO05D005980 7.1e-07 57.8 45 64.4
Thecc.08G143500 Theobroma cacao HOM05D005086 ORTHO05D005980 7.1e-07 57.8 45 62.2
AL1G34590 Arabidopsis lyrata HOM05D005086 ORTHO05D005980 9.3e-07 57.4 46 60.9
CSS0007222 Camellia sinensis var. sinensis HOM05D005086 ORTHO05D005980 9.3e-07 57.4 45 60.0
Ciclev10001104m.g Citrus clementina HOM05D005086 ORTHO05D005980 9.3e-07 57.4 54 55.6
CsaV3_6G031010 Cucumis sativus L. HOM05D005086 ORTHO05D005980 9.3e-07 57.4 45 62.2
MBI06_g35967_MAGBIO Magnolia biondii HOM05D005086 ORTHO05D005980 9.3e-07 57.4 45 64.4
MBI06_g41412_MAGBIO Magnolia biondii HOM05D005086 ORTHO05D005980 9.3e-07 57.4 45 64.4
QL02p025654 Quercus lobata HOM05D005086 ORTHO05D005980 9.3e-07 57.4 45 62.2
SGA_v2.0_scaffold24G10385 Striga asiatica HOM05D005086 ORTHO05D005980 9.3e-07 57.4 45 66.7
AT1G21480 Arabidopsis thaliana HOM05D005086 ORTHO05D005980 1.2e-06 57.0 46 60.9
CDE08G0515 Ceratophyllum demersum HOM05D005086 ORTHO05D005980 1.2e-06 57.0 44 61.4
Eucgr.E02380 Eucalyptus grandis HOM05D005086 ORTHO05D005980 1.2e-06 57.0 45 62.2
Manes.02G174400 Manihot esculenta HOM05D005086 ORTHO05D005980 1.2e-06 57.0 45 62.2
Rhsim11G0077300 Rhododendron simsii HOM05D005086 ORTHO05D005980 1.2e-06 57.0 47 55.3
Hund26734 Selenicereus undatus HOM05D005086 ORTHO05D005980 1.2e-06 57.0 45 62.2
Sc20g0003350 Simmondsia chinensis HOM05D005086 ORTHO05D005980 1.2e-06 57.0 45 62.2
vmacro00876 Vaccinium macrocarpon HOM05D005086 ORTHO05D005980 1.2e-06 57.0 45 60.0
vmacro00889 Vaccinium macrocarpon HOM05D005086 ORTHO05D005980 1.2e-06 57.0 45 60.0
HPP92_013480 Vanilla planifolia HOM05D005086 ORTHO05D005980 1.2e-06 57.0 45 64.4
CAN.G2.46 Capsicum annuum HOM05D005086 ORTHO05D005980 1.6e-06 56.6 45 64.4
Hma1.2p1_0107F.1_g051390 Hydrangea macrophylla HOM05D005086 ORTHO05D005980 1.6e-06 56.6 45 62.2
Nn5g28611 Nelumbo nucifera HOM05D005086 ORTHO05D005980 1.6e-06 56.6 45 60.0
THA.LOC104812071 Tarenaya hassleriana HOM05D005086 ORTHO05D005980 1.6e-06 56.6 46 60.9
GSVIVG01010019001 Vitis vinifera HOM05D005086 ORTHO05D005980 1.6e-06 56.6 45 60.0
Duzib041G0632 Durio zibethinus HOM05D005086 ORTHO05D005980 2.1e-06 56.2 45 60.0
Duzib093G1227 Durio zibethinus HOM05D005086 ORTHO05D005980 2.1e-06 56.2 45 64.4
Oeu025719.1 Olea europaea HOM05D005086 ORTHO05D005980 2.1e-06 56.2 45 62.2
PSO675G1430 Papaver somniferum HOM05D005086 ORTHO05D005980 2.1e-06 56.2 45 64.4
SHI09486 Sapria himalayana HOM05D005086 ORTHO05D005980 2.1e-06 56.2 49 57.1
THA.LOC104810043 Tarenaya hassleriana HOM05D005086 ORTHO05D005980 2.1e-06 56.2 46 60.9
TAR625G0035 Trochodendron aralioides HOM05D005086 ORTHO05D005980 2.1e-06 56.2 45 62.2
Thhalv10007584m.g Eutrema salsugineum HOM05D005086 ORTHO05D005980 2.7e-06 55.8 45 60.0
Lj4A690G48 Lonicera japonica HOM05D005086 ORTHO05D005980 2.7e-06 55.8 44 63.6
Sp1g19010 Schrenkiella parvula HOM05D005086 ORTHO05D005980 2.7e-06 55.8 45 60.0
Sed0020214 Sechium edule HOM05D005086 ORTHO05D005980 2.7e-06 55.8 45 62.2
ATR1136G054 Amborella trichopoda HOM05D005086 ORTHO05D005980 3.5e-06 55.5 45 64.4
A06p17510 Brassica napus HOM05D005086 ORTHO05D005980 3.5e-06 55.5 54 51.9
CiPaw.15G022200 Carya illinoinensis HOM05D005086 ORTHO05D005980 3.5e-06 55.5 45 60.0
CiPaw.16G018300 Carya illinoinensis HOM05D005086 ORTHO05D005980 3.5e-06 55.5 45 62.2
ClCG08G006410 Citrullus lanatus HOM05D005086 ORTHO05D005980 3.5e-06 55.5 45 62.2
Thecc.08G143300 Theobroma cacao HOM05D005086 ORTHO05D005980 3.5e-06 55.5 45 64.4
unitig_82.g27089 Utricularia gibba HOM05D005086 ORTHO05D005980 3.5e-06 55.5 45 60.0
TWI74G0391 Tripterygium wilfordii HOM05D005086 ORTHO05D005980 4.6e-06 55.1 45 60.0
Actinidia16590 Actinidia chinensis HOM05D005086 ORTHO05D005980 6.0e-06 54.7 45 60.0
ECA246G0400 Erigeron canadensis HOM05D006773 ORTHO05D005980 6.0e-06 54.7 45 57.8
Gohir.A02G067100 Gossypium hirsutum HOM05D005086 ORTHO05D005980 6.0e-06 54.7 45 62.2
Gohir.D02G073300 Gossypium hirsutum HOM05D005086 ORTHO05D005980 6.0e-06 54.7 45 62.2
Gorai.005G082700 Gossypium raimondii HOM05D005086 ORTHO05D005980 6.0e-06 54.7 45 62.2
HanXRQChr05g0160791 Helianthus annuus HOM05D005086 ORTHO05D005980 6.0e-06 54.7 45 60.0
Atru.chr13.1691 Acer truncatum HOM05D005086 ORTHO05D005980 7.9e-06 54.3 45 60.0
Aa31LG7G5420 Aethionema arabicum HOM05D005086 ORTHO05D005980 7.9e-06 54.3 46 56.5
BcaB07g32137 Brassica carinata HOM05D005086 ORTHO05D005980 7.9e-06 54.3 45 57.8
BraA06t24847Z Brassica rapa HOM05D005086 ORTHO05D005980 7.9e-06 54.3 45 57.8


User provided reference genes

Program Settings