Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.14G201900 Glycine max HOM05D004396 ORTHO05D005272 2.0e-71 272.3 139 100.0
Phvul.002G136700 Phaseolus vulgaris HOM05D004396 ORTHO05D005272 2.0e-50 202.6 110 94.5
arahy.Tifrunner.gnm1.ann1.Z3U2VZ Arachis hypogaea HOM05D004396 ORTHO05D005272 3.4e-50 201.8 110 93.6
VMungo1215G3227 Vigna mungo HOM05D004396 ORTHO05D005272 1.7e-49 199.5 110 92.7
Glyma.09G207800 Glycine max HOM05D004396 ORTHO05D005272 8.3e-49 197.2 106 94.3
Ca_25178_v3 Cicer arietinum L. HOM05D004396 ORTHO05D005272 1.4e-48 196.4 109 89.9
Lalb_Chr05g0215751 Lupinus albus HOM05D004396 ORTHO05D005272 1.8e-48 196.1 110 90.0
AT1G32210 Arabidopsis thaliana HOM05D004396 ORTHO05D005272 7.0e-48 194.1 110 90.0
BcaB07g32895 Brassica carinata HOM05D004396 ORTHO05D005272 1.2e-47 193.4 110 90.0
BraA09t38945Z Brassica rapa HOM05D004396 ORTHO05D005272 1.2e-47 193.4 110 90.0
BcaB03g13752 Brassica carinata HOM05D004396 ORTHO05D005272 1.6e-47 193.0 110 89.1
BcaB04g17995 Brassica carinata HOM05D004396 ORTHO05D005272 1.6e-47 193.0 110 89.1
Lalb_Chr16g0381071 Lupinus albus HOM05D004396 ORTHO05D005272 1.6e-47 193.0 110 86.4
AL1G46340 Arabidopsis lyrata HOM05D004396 ORTHO05D005272 2.0e-47 192.6 110 89.1
BcaC05g27252 Brassica carinata HOM05D004396 ORTHO05D005272 2.0e-47 192.6 110 89.1
C05p31610 Brassica napus HOM05D004396 ORTHO05D005272 2.0e-47 192.6 110 89.1
CARHR031580 Cardamine hirsuta HOM05D004396 ORTHO05D005272 2.0e-47 192.6 110 89.1
Thhalv10009144m.g Eutrema salsugineum HOM05D004396 ORTHO05D005272 2.0e-47 192.6 110 89.1
Lj2g0004535 Lotus japonicus HOM05D004396 ORTHO05D005272 2.0e-47 192.6 110 87.3
Carub.0001s3054 Capsella rubella HOM05D004396 ORTHO05D005272 2.7e-47 192.2 110 89.1
TPR.G19425 Trifolium pratense HOM05D004396 ORTHO05D005272 2.7e-47 192.2 114 87.7
A05p25120 Brassica napus HOM05D004396 ORTHO05D005272 3.5e-47 191.8 110 88.2
BraA05t21392Z Brassica rapa HOM05D004396 ORTHO05D005272 3.5e-47 191.8 110 88.2
Sp1g27890 Schrenkiella parvula HOM05D004396 ORTHO05D005272 4.6e-47 191.4 110 89.1
CsaV3_3G001340 Cucumis sativus L. HOM05D004396 ORTHO05D005272 7.8e-47 190.7 110 89.1
Thhalv10017441m.g Eutrema salsugineum HOM05D004396 ORTHO05D005272 7.8e-47 190.7 110 89.1
Ca_27048_v3 Cicer arietinum L. HOM05D004396 ORTHO05D005272 1.7e-46 189.5 113 85.8
AT2G35520 Arabidopsis thaliana HOM05D004396 ORTHO05D005272 2.3e-46 189.1 110 88.2
ClCG10G001270 Citrullus lanatus HOM05D004396 ORTHO05D005272 2.3e-46 189.1 110 89.1
Medtr3g023120 Medicago truncatula HOM05D004396 ORTHO05D005272 2.3e-46 189.1 110 85.5
THA.LOC104798491 Tarenaya hassleriana HOM05D004396 ORTHO05D005272 3.0e-46 188.7 110 90.0
CARHR129690 Cardamine hirsuta HOM05D004396 ORTHO05D005272 3.9e-46 188.3 110 87.3
THA.LOC104814414 Tarenaya hassleriana HOM05D004396 ORTHO05D005272 3.9e-46 188.3 110 89.1
Carub.0004s1721 Capsella rubella HOM05D004396 ORTHO05D005272 8.6e-46 187.2 110 85.5
AL4G31570 Arabidopsis lyrata HOM05D004396 ORTHO05D005272 1.1e-45 186.8 113 85.8
Peaxi162Scf00170g00812 Petunia axillaris HOM05D004396 ORTHO05D005272 1.1e-45 186.8 113 85.8
Medtr5g029240 Medicago truncatula HOM05D004396 ORTHO05D005272 1.5e-45 186.4 106 87.7
TWI81G0111 Tripterygium wilfordii HOM05D004396 ORTHO05D005272 1.9e-45 186.0 110 87.3
Nn3g19387 Nelumbo nucifera HOM05D004396 ORTHO05D005272 2.5e-45 185.7 110 86.4
Psat5g213400 Pisum sativum HOM05D004396 ORTHO05D005272 2.5e-45 185.7 110 84.5
CSS0033679 Camellia sinensis var. sinensis HOM05D004396 ORTHO05D005272 3.3e-45 185.3 113 85.0
COL.COLO4_16940 Corchorus olitorius HOM05D004396 ORTHO05D005272 4.3e-45 184.9 113 85.8
CAN.G726.24 Capsicum annuum HOM05D004396 ORTHO05D005272 5.6e-45 184.5 113 84.1
Hma1.2p1_0870F.1_g230890 Hydrangea macrophylla HOM05D004396 ORTHO05D005272 5.6e-45 184.5 113 85.0
Rhsim11G0021700 Rhododendron simsii HOM05D004396 ORTHO05D005272 7.3e-45 184.1 113 84.1
Solyc08g076460.3 Solanum lycopersicum HOM05D004396 ORTHO05D005272 7.3e-45 184.1 113 84.1
Sopen08g025040 Solanum pennellii HOM05D004396 ORTHO05D005272 7.3e-45 184.1 113 84.1
PGSC0003DMG400014795 Solanum tuberosum HOM05D004396 ORTHO05D005272 7.3e-45 184.1 113 84.1
CSS0013599 Camellia sinensis var. sinensis HOM05D004396 ORTHO05D005272 9.5e-45 183.7 113 83.2
CSS0046263 Camellia sinensis var. sinensis HOM05D004396 ORTHO05D005272 9.5e-45 183.7 113 83.2
TPR.G31993 Trifolium pratense HOM05D004396 ORTHO05D005272 9.5e-45 183.7 110 84.5
TWI60G0023 Tripterygium wilfordii HOM05D004396 ORTHO05D005272 9.5e-45 183.7 110 85.5
QL12p001650 Quercus lobata HOM05D004396 ORTHO05D005272 1.2e-44 183.3 110 84.5
CiPaw.11G098400 Carya illinoinensis HOM05D004396 ORTHO05D005272 1.6e-44 183.0 110 85.5
Cc08_g03470 Coffea canephora HOM05D004396 ORTHO05D005272 1.6e-44 183.0 113 85.0
Actinidia14779 Actinidia chinensis HOM05D004396 ORTHO05D005272 2.1e-44 182.6 113 84.1
Dinv25260 Davidia involucrata HOM05D004396 ORTHO05D005272 2.1e-44 182.6 113 84.1
Dinv29003 Davidia involucrata HOM05D004396 ORTHO05D005272 2.1e-44 182.6 113 85.0
Nitab4.5_0000529g0110 Nicotiana tabacum HOM05D004396 ORTHO05D005272 2.1e-44 182.6 113 81.4
Potri.003G096800 Populus trichocarpa HOM05D004396 ORTHO05D005272 2.1e-44 182.6 110 84.5
Thecc.03G310300 Theobroma cacao HOM05D004396 ORTHO05D005272 2.8e-44 182.2 113 85.0
GSVIVG01013064001 Vitis vinifera HOM05D004396 ORTHO05D005272 2.8e-44 182.2 110 86.4
Haze_08163 Corylus avellana HOM05D004396 ORTHO05D005272 3.6e-44 181.8 110 83.6
Eucgr.H00688 Eucalyptus grandis HOM05D004396 ORTHO05D005272 3.6e-44 181.8 110 86.4
PSO541G6011 Papaver somniferum HOM05D004396 ORTHO05D005272 3.6e-44 181.8 112 82.1
Actinidia18135 Actinidia chinensis HOM05D004396 ORTHO05D005272 4.7e-44 181.4 113 83.2
DCAR_008222 Daucus carota HOM05D004396 ORTHO05D005272 4.7e-44 181.4 109 87.2
ATR0626G058 Amborella trichopoda HOM05D004396 ORTHO05D005272 6.2e-44 181.0 109 84.4
Cpa.g.sc42.149 Carica papaya HOM05D004396 ORTHO05D005272 6.2e-44 181.0 106 87.7
PSO339G1317 Papaver somniferum HOM05D004396 ORTHO05D005272 6.2e-44 181.0 109 83.5
PSO384G3027 Papaver somniferum HOM05D004396 ORTHO05D005272 6.2e-44 181.0 109 83.5
PSO675G8737 Papaver somniferum HOM05D004396 ORTHO05D005272 6.2e-44 181.0 112 83.0
SGA_v2.0_scaffold36G14295 Striga asiatica HOM05D004396 ORTHO05D005272 6.2e-44 181.0 109 83.5
Manes.12G090054 Manihot esculenta HOM05D004396 ORTHO05D005272 8.0e-44 180.6 110 85.5
Rhsim07G0132100 Rhododendron simsii HOM05D004396 ORTHO05D005272 8.0e-44 180.6 113 84.1
CDE08G0196 Ceratophyllum demersum HOM05D004396 ORTHO05D005272 1.0e-43 180.3 113 81.4
Ciclev10002883m.g Citrus clementina HOM05D004396 ORTHO05D005272 1.0e-43 180.3 110 85.5
Sabra03G0065300 Salix brachista HOM05D004396 ORTHO05D005272 1.0e-43 180.3 110 84.5
vmacro00278 Vaccinium macrocarpon HOM05D004396 ORTHO05D005272 1.0e-43 180.3 113 81.4
MSTRG.12178 Avicennia marina HOM05D004396 ORTHO05D005272 1.4e-43 179.9 109 83.5
Hma1.2p1_0890F.1_g233090 Hydrangea macrophylla HOM05D004396 ORTHO05D005272 1.4e-43 179.9 113 82.3
Manes.04G055632 Manihot esculenta HOM05D004396 ORTHO05D005272 1.4e-43 179.9 110 84.5
Lsat_1_v5_gn_3_19181 Lactuca sativa HOM05D004396 ORTHO05D005272 1.8e-43 179.5 109 84.4
HanXRQChr13g0414241 Helianthus annuus HOM05D004396 ORTHO05D005272 2.3e-43 179.1 109 84.4
SGA_v2.0_scaffold198G41072 Striga asiatica HOM05D004396 ORTHO05D005272 2.3e-43 179.1 109 83.5
TAR375G0183 Trochodendron aralioides HOM05D004396 ORTHO05D005272 2.3e-43 179.1 108 84.3
Duzib205G0471 Durio zibethinus HOM05D004396 ORTHO05D005272 4.0e-43 178.3 109 85.3
Nitab4.5_0000556g0250 Nicotiana tabacum HOM05D004396 ORTHO05D005272 4.0e-43 178.3 113 80.5
Nitab4.5_0004528g0030 Nicotiana tabacum HOM05D004396 ORTHO05D005272 4.0e-43 178.3 113 80.5
Lsat_1_v5_gn_6_80060 Lactuca sativa HOM05D004396 ORTHO05D005272 5.2e-43 177.9 105 87.6
Oeu027093.1 Olea europaea HOM05D004396 ORTHO05D005272 5.2e-43 177.9 113 81.4
Potri.001G136800 Populus trichocarpa HOM05D004396 ORTHO05D005272 5.2e-43 177.9 110 83.6
Aqoxy7G03666 Aquilegia oxysepala HOM05D004396 ORTHO05D005272 6.8e-43 177.6 109 83.5
Hund10776 Selenicereus undatus HOM05D004396 ORTHO05D005272 6.8e-43 177.6 110 83.6
Duzib084G0048 Durio zibethinus HOM05D004396 ORTHO05D005272 8.9e-43 177.2 109 85.3
ECA240G0094 Erigeron canadensis HOM05D004396 ORTHO05D005272 8.9e-43 177.2 109 83.5
Gohir.A12G206100 Gossypium hirsutum HOM05D004396 ORTHO05D005272 8.9e-43 177.2 114 85.1
Gohir.D12G208400 Gossypium hirsutum HOM05D004396 ORTHO05D005272 8.9e-43 177.2 114 85.1
Gorai.008G224000 Gossypium raimondii HOM05D004396 ORTHO05D005272 8.9e-43 177.2 114 85.1
PGR031G0362 Punica granatum HOM05D004396 ORTHO05D005272 1.5e-42 176.4 110 81.8
PGR031G2119 Punica granatum HOM05D004396 ORTHO05D005272 1.5e-42 176.4 110 81.8
Sc01g0005580 Simmondsia chinensis HOM05D004396 ORTHO05D005272 1.5e-42 176.4 110 82.7
Gorai.003G185400 Gossypium raimondii HOM05D004396 ORTHO05D005272 3.4e-42 175.3 109 83.5
FAN24G1987 Fragaria x ananassa HOM05D004396 ORTHO05D005272 4.4e-42 174.9 109 83.5
PGSC0003DMG400018505 Solanum tuberosum HOM05D004396 ORTHO05D005272 4.4e-42 174.9 113 77.9
HanXRQChr06g0172781 Helianthus annuus HOM05D004396 ORTHO05D005272 5.8e-42 174.5 109 82.6
RcHm_v2.0_Chr6g0251281 Rosa chinensis HOM05D004396 ORTHO05D005272 7.5e-42 174.1 109 84.4
FAN20G1930 Fragaria x ananassa HOM05D004396 ORTHO05D005272 9.8e-42 173.7 109 82.6
FAN27G1914 Fragaria x ananassa HOM05D004396 ORTHO05D005272 9.8e-42 173.7 109 82.6
ECA240G0984 Erigeron canadensis HOM05D000006 ORTHO05D000001 1.3e-41 173.3 109 81.7
Lj4g0004552 Lotus japonicus HOM05D004396 ORTHO05D005272 1.7e-41 172.9 109 79.8
Prupe.8G007900 Prunus persica HOM05D004396 ORTHO05D005272 1.7e-41 172.9 109 83.5
MD10G1005100 Malus domestica HOM05D004396 ORTHO05D005272 2.2e-41 172.6 116 81.0
FvH4_2g00930 Fragaria vesca HOM05D004396 ORTHO05D005272 2.9e-41 172.2 107 83.2
HPP92_025445 Vanilla planifolia HOM05D004396 ORTHO05D005272 2.9e-41 172.2 110 79.1
Os04g0397000 Oryza sativa ssp. japonica HOM05D004396 ORTHO05D005272 3.7e-41 171.8 111 80.2
HPP92_025493 Vanilla planifolia HOM05D004396 ORTHO05D005272 3.7e-41 171.8 110 79.1
MD05G1007700 Malus domestica HOM05D004396 ORTHO05D005272 6.4e-41 171.0 109 80.7
Prupe.4G286900 Prunus persica HOM05D004396 ORTHO05D005272 1.4e-40 169.9 109 81.7
SalBow1G7612 Salvia bowleyana HOM05D004396 ORTHO05D005272 1.9e-40 169.5 113 77.0
SEGI_22391 Sequoiadendron giganteum HOM05D004396 ORTHO05D005272 3.2e-40 168.7 109 76.1
unitig_899.g15442 Utricularia gibba HOM05D004396 ORTHO05D005272 4.1e-40 168.3 114 78.1
Zm00001eb379050 Zea mays HOM05D004396 ORTHO05D005272 4.1e-40 168.3 111 80.2
Migut.A01174 Erythranthe guttata HOM05D004396 ORTHO05D005272 9.2e-40 167.2 109 78.9
Sabra01G0105900 Salix brachista HOM05D004396 ORTHO05D005272 3.5e-39 165.2 120 75.0
Pp3c2_30990 Physcomitrium patens HOM05D004396 ORTHO05D005272 4.6e-39 164.9 109 71.6
EL10Ac5g11811 Beta vulgaris HOM05D004396 ORTHO05D005272 7.8e-39 164.1 146 64.4
Mapoly0046s0003 Marchantia polymorpha HOM05D004396 ORTHO05D005272 7.8e-39 164.1 113 72.6
SMO117G0136 Selaginella moellendorffii HOM05D004396 ORTHO05D005272 1.1e-37 160.2 105 77.1
arahy.Tifrunner.gnm1.ann1.KG0UNZ Arachis hypogaea HOM05D004396 ORTHO05D005272 1.5e-37 159.8 87 93.1
BolC3t13671H Brassica oleracea HOM05D004396 ORTHO05D005272 2.1e-36 156.0 194 50.5
AagrBONN_evm.TU.Sc2ySwM_362.1218 Anthoceros agrestis HOM05D000444 ORTHO05D000489 1.4e-35 153.3 101 76.2
BolC5t31884H Brassica oleracea HOM05D004396 ORTHO05D005272 1.5e-34 149.8 86 88.4
Gohir.A03G000033 Gossypium hirsutum HOM05D004396 ORTHO05D005272 2.0e-34 149.4 85 89.4
Peaxi162Scf00045g00321 Petunia axillaris HOM05D004396 ORTHO05D005272 2.9e-33 145.6 85 83.5
AUR62036328 Chenopodium quinoa HOM05D004396 ORTHO05D005272 2.4e-32 142.5 86 86.0
Migut.E00744 Erythranthe guttata HOM05D004396 ORTHO05D005272 2.1e-31 139.4 84 83.3
Sed0012676 Sechium edule HOM05D004396 ORTHO05D005272 6.0e-31 137.9 86 81.4
CiPaw.12G068300 Carya illinoinensis HOM05D004396 ORTHO05D005272 1.0e-30 137.1 89 77.5
Ciclev10013120m.g Citrus clementina HOM05D004396 ORTHO05D005272 1.0e-30 137.1 100 74.0
Gohir.D03G176200 Gossypium hirsutum HOM05D004396 ORTHO05D005272 1.3e-30 136.7 113 69.9
Nn1g00212 Nelumbo nucifera HOM05D004396 ORTHO05D005272 1.9e-29 132.9 83 81.9
A08p09310 Brassica napus HOM05D004396 ORTHO05D005272 1.2e-28 130.2 106 67.9
BraA08t32929Z Brassica rapa HOM05D004396 ORTHO05D005272 1.2e-28 130.2 106 67.9
MBI02_g15155_MAGBIO Magnolia biondii HOM05D004396 ORTHO05D005272 3.1e-27 125.6 68 88.2
Cfa012506 Carpinus fangiana HOM05D004396 ORTHO05D005272 6.8e-27 124.4 77 80.5
CAN.G1987.1 Capsicum annuum HOM05D004396 ORTHO05D005272 8.9e-27 124.0 69 89.9
Psat2g139040 Pisum sativum HOM05D004396 ORTHO05D005272 8.9e-27 124.0 65 93.8
Aa31LG2G13800 Aethionema arabicum HOM05D004396 ORTHO05D005272 1.4e-24 116.7 81 75.3
Ah.02g116090 Amaranthus hybridus HOM05D002241 ORTHO05D002458 1.6e-23 113.2 71 85.9
Cre02.g108400 Chlamydomonas reinhardtii HOM05D004396 ORTHO05D005272 1.6e-23 113.2 98 54.1
Sc24g0004110 Simmondsia chinensis HOM05D004396 ORTHO05D005272 6.0e-23 111.3 71 83.1
Atru.chr6.1524 Acer truncatum HOM05D004396 ORTHO05D005272 1.9e-21 106.3 84 70.2
CBR_g15971 Chara braunii HOM05D004396 ORTHO05D005272 4.3e-21 105.1 77 66.2
Pp3c1_6120 Physcomitrium patens HOM05D004396 ORTHO05D005272 9.6e-21 104.0 74 71.6
FAN15G2154 Fragaria x ananassa HOM05D004396 ORTHO05D005272 8.1e-20 100.9 70 75.7
BolC8t47998H Brassica oleracea HOM05D004396 ORTHO05D005272 2.2e-17 92.8 110 55.5
Hund15006 Selenicereus undatus HOM05D004396 ORTHO05D005272 9.3e-16 87.4 58 79.3
C03p12000 Brassica napus HOM05D004396 ORTHO05D023989 2.4e-11 72.8 49 73.5
A09p33990 Brassica napus HOM05D004396 ORTHO05D005272 3.4e-10 68.9 48 72.9
C05p39130 Brassica napus HOM05D004396 ORTHO05D005272 1.7e-09 66.6 41 80.5
BolC5t32648H Brassica oleracea HOM05D004396 ORTHO05D005272 1.7e-09 66.6 41 80.5
TPR.G36203 Trifolium pratense HOM05D004396 ORTHO05D005272 2.2e-09 66.2 47 74.5


User provided reference genes

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