Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.14G193500 Glycine max HOM05D005476 ORTHO05D006886 4.2e-220 767.7 376 100.0
Glyma.02G226600 Glycine max HOM05D005476 ORTHO05D006886 1.5e-201 706.1 376 93.1
Phvul.008G261400 Phaseolus vulgaris HOM05D005476 ORTHO05D006886 6.7e-170 600.9 376 80.3
Ca_05598_v3 Cicer arietinum L. HOM05D005476 ORTHO05D006886 1.5e-153 546.6 376 71.3
Psat2g058600 Pisum sativum HOM05D005476 ORTHO05D006886 1.4e-151 540.0 358 74.0
LjContig00155g0002690 Lotus japonicus HOM05D005476 ORTHO05D006886 2.7e-150 535.8 376 72.1
TPR.G5779 Trifolium pratense HOM05D005476 ORTHO05D006886 2.3e-149 532.7 374 69.8
Medtr5g070350 Medicago truncatula HOM05D005476 ORTHO05D006886 3.4e-145 518.8 373 68.4
Lalb_Chr17g0345081 Lupinus albus HOM05D005476 ORTHO05D006886 1.0e-141 507.3 385 66.8
VMungo0647G0678 Vigna mungo HOM05D005476 ORTHO05D006886 2.3e-133 479.6 287 82.9
arahy.Tifrunner.gnm1.ann1.Q06W8H Arachis hypogaea HOM05D005476 ORTHO05D006886 1.2e-131 473.8 385 63.6
CiPaw.13G077600 Carya illinoinensis HOM05D005476 ORTHO05D006886 5.8e-121 438.3 371 60.1
Dinv14437 Davidia involucrata HOM05D005476 ORTHO05D006886 2.2e-120 436.4 378 58.7
Thecc.09G301800 Theobroma cacao HOM05D005476 ORTHO05D006886 1.1e-119 434.1 373 59.2
Duzib168G1303 Durio zibethinus HOM05D005476 ORTHO05D006886 5.1e-117 425.2 354 59.3
Haze_24322 Corylus avellana HOM05D005476 ORTHO05D006886 3.3e-116 422.5 343 61.2
Cfa011695 Carpinus fangiana HOM05D005476 ORTHO05D006886 4.3e-116 422.2 343 60.9
COL.COLO4_19157 Corchorus olitorius HOM05D005476 ORTHO05D006886 4.3e-116 422.2 365 58.9
TAR633G0563 Trochodendron aralioides HOM05D005476 ORTHO05D006886 3.6e-115 419.1 372 57.0
Dinv28640 Davidia involucrata HOM05D005476 ORTHO05D006886 4.7e-115 418.7 375 58.4
TAR636G1181 Trochodendron aralioides HOM05D005476 ORTHO05D006886 6.2e-115 418.3 377 57.3
CiPaw.14G059600 Carya illinoinensis HOM05D005476 ORTHO05D006886 4.0e-114 415.6 351 60.1
Gorai.006G106700 Gossypium raimondii HOM05D005476 ORTHO05D006886 2.6e-113 412.9 345 60.3
RcHm_v2.0_Chr5g0069451 Rosa chinensis HOM05D005476 ORTHO05D006886 2.6e-113 412.9 378 56.3
Atru.chr3.4220 Acer truncatum HOM05D005476 ORTHO05D006886 1.3e-112 410.6 376 56.4
Potri.009G046200 Populus trichocarpa HOM05D005476 ORTHO05D006886 2.9e-112 409.5 375 56.5
Prupe.6G057500 Prunus persica HOM05D005476 ORTHO05D006886 6.4e-112 408.3 384 55.2
QL01p038276 Quercus lobata HOM05D005476 ORTHO05D006886 6.4e-112 408.3 339 61.7
CSS0011477 Camellia sinensis var. sinensis HOM05D005476 ORTHO05D006886 1.4e-111 407.1 375 58.1
TWI31G0160 Tripterygium wilfordii HOM05D005476 ORTHO05D006886 1.2e-110 404.1 387 54.5
CSS0028478 Camellia sinensis var. sinensis HOM05D005476 ORTHO05D006886 4.6e-110 402.1 375 57.3
Ciclev10028681m.g Citrus clementina HOM05D005476 ORTHO05D006886 6.0e-110 401.7 371 55.3
Cpa.g.sc415.4 Carica papaya HOM05D005476 ORTHO05D006886 1.0e-109 401.0 373 55.5
FAN16G3667 Fragaria x ananassa HOM05D005476 ORTHO05D006886 1.0e-109 401.0 380 55.5
FvH4_3g38550 Fragaria vesca HOM05D005476 ORTHO05D006886 1.7e-109 400.2 380 55.5
FAN21G0574 Fragaria x ananassa HOM05D005476 ORTHO05D006886 3.9e-109 399.1 380 55.5
Solyc06g076950.3 Solanum lycopersicum HOM05D005476 ORTHO05D006886 6.6e-109 398.3 377 55.2
FAN11G1091 Fragaria x ananassa HOM05D005476 ORTHO05D006886 8.7e-109 397.9 380 55.3
CANSAT25G3760 Cannabis sativa HOM05D005476 ORTHO05D006886 1.5e-108 397.1 384 54.7
Duzib170G1024 Durio zibethinus HOM05D005476 ORTHO05D006886 1.9e-108 396.7 367 55.6
Sabra09G0033300 Salix brachista HOM05D005476 ORTHO05D006886 5.6e-108 395.2 375 55.7
Sopen06g033350 Solanum pennellii HOM05D005476 ORTHO05D006886 7.3e-108 394.8 377 54.9
PGSC0003DMG400030356 Solanum tuberosum HOM05D005476 ORTHO05D006886 1.3e-107 394.0 377 54.9
DCAR_007375 Daucus carota HOM05D005476 ORTHO05D006886 3.6e-107 392.5 371 55.8
MD11G1074700 Malus domestica HOM05D005476 ORTHO05D006886 6.2e-107 391.7 378 55.0
Nn2g13708 Nelumbo nucifera HOM05D005476 ORTHO05D006886 1.1e-106 391.0 376 54.3
Eucgr.B02253 Eucalyptus grandis HOM05D005476 ORTHO05D006886 1.8e-106 390.2 364 55.5
Peaxi162Scf00540g00426 Petunia axillaris HOM05D005476 ORTHO05D006886 1.8e-106 390.2 380 55.3
TWI79G0899 Tripterygium wilfordii HOM05D005476 ORTHO05D006886 2.4e-106 389.8 387 53.0
CAN.G394.127 Capsicum annuum HOM05D005476 ORTHO05D006886 5.3e-106 388.7 368 55.2
Nitab4.5_0001806g0030 Nicotiana tabacum HOM05D005476 ORTHO05D006886 1.5e-105 387.1 369 55.0
FAN25G3001 Fragaria x ananassa HOM05D005476 ORTHO05D006886 5.8e-105 385.2 406 52.5
MD03G1070700 Malus domestica HOM05D005476 ORTHO05D006886 5.8e-105 385.2 378 54.5
Nitab4.5_0000010g0290 Nicotiana tabacum HOM05D005476 ORTHO05D006886 5.8e-105 385.2 377 53.8
vmacro02961 Vaccinium macrocarpon HOM05D005476 ORTHO05D006886 4.9e-104 382.1 438 48.2
Lsat_1_v5_gn_9_20101 Lactuca sativa HOM05D005476 ORTHO05D006886 3.2e-103 379.4 366 53.3
Potri.001G251500 Populus trichocarpa HOM05D005476 ORTHO05D006886 3.2e-103 379.4 371 53.1
ClCG03G000760 Citrullus lanatus HOM05D005476 ORTHO05D006886 7.1e-103 378.3 366 53.6
Sed0016907 Sechium edule HOM05D005476 ORTHO05D006886 1.6e-102 377.1 366 53.0
Aqoxy2G00901 Aquilegia oxysepala HOM05D005476 ORTHO05D006886 2.7e-102 376.3 378 53.2
MELO3C020550.2 Cucumis melo HOM05D005476 ORTHO05D006886 6.6e-101 371.7 361 53.7
Sed0014418 Sechium edule HOM05D005476 ORTHO05D006886 6.6e-101 371.7 366 52.7
PSO801G0319 Papaver somniferum HOM05D005476 ORTHO05D006886 1.1e-100 370.9 371 51.8
Manes.02G119400 Manihot esculenta HOM05D005476 ORTHO05D006886 1.9e-100 370.2 332 55.4
SalBow2G2575 Salvia bowleyana HOM05D005476 ORTHO05D006886 1.9e-100 370.2 368 53.0
Cc01_g14180 Coffea canephora HOM05D005476 ORTHO05D006886 2.5e-100 369.8 330 56.7
Gohir.A09G090300 Gossypium hirsutum HOM05D005476 ORTHO05D006886 2.5e-100 369.8 291 62.9
GSVIVG01024740001 Vitis vinifera HOM05D005476 ORTHO05D006886 2.5e-100 369.8 383 51.4
Migut.N00789 Erythranthe guttata HOM05D005476 ORTHO05D006886 3.3e-100 369.4 348 57.2
SGA_v2.0_scaffold146G36140 Striga asiatica HOM05D005476 ORTHO05D006886 3.3e-100 369.4 327 56.9
Gohir.D09G090400 Gossypium hirsutum HOM05D005476 ORTHO05D006886 4.3e-100 369.0 291 63.2
Manes.01G161600 Manihot esculenta HOM05D005476 ORTHO05D006886 5.6e-100 368.6 369 51.5
SGA_v2.0_scaffold120G32912 Striga asiatica HOM05D005476 ORTHO05D006886 5.6e-100 368.6 373 52.0
PSO339G1712 Papaver somniferum HOM05D005476 ORTHO05D006886 6.2e-99 365.2 371 51.5
HanXRQChr04g0109161 Helianthus annuus HOM05D005476 ORTHO05D006886 1.8e-98 363.6 328 56.4
EL10Ac7g16167 Beta vulgaris HOM05D005476 ORTHO05D006886 5.3e-98 362.1 391 49.6
MBI14_g42907_MAGBIO Magnolia biondii HOM05D005476 ORTHO05D006886 5.3e-98 362.1 371 51.5
THA.LOC104810712 Tarenaya hassleriana HOM05D005476 ORTHO05D006886 6.9e-98 361.7 292 60.6
Rhsim13G0069500 Rhododendron simsii HOM05D005476 ORTHO05D006886 2.0e-97 360.1 356 53.4
Nn2g11493 Nelumbo nucifera HOM05D005476 ORTHO05D006886 2.9e-96 356.3 300 59.3
Hund18848 Selenicereus undatus HOM05D005476 ORTHO05D006886 2.4e-95 353.2 342 55.3
Ah.08g221180 Amaranthus hybridus HOM05D005476 ORTHO05D006886 4.2e-95 352.4 384 50.0
ECA247G2000 Erigeron canadensis HOM05D005476 ORTHO05D006886 1.6e-94 350.5 371 50.1
Carub.0008s1935 Capsella rubella HOM05D005476 ORTHO05D006886 2.1e-94 350.1 289 60.2
Sc06g0008450 Simmondsia chinensis HOM05D005476 ORTHO05D006886 2.1e-94 350.1 376 50.8
PGR102G2402 Punica granatum HOM05D005476 ORTHO05D006886 1.0e-93 347.8 294 60.2
AUR62020130 Chenopodium quinoa HOM05D005476 ORTHO05D006886 2.3e-93 346.7 347 52.7
SalBow5G1841 Salvia bowleyana HOM05D005476 ORTHO05D006886 3.0e-93 346.3 330 54.8
AL8G35010 Arabidopsis lyrata HOM05D005476 ORTHO05D006886 1.1e-92 344.4 292 59.2
Thhalv10014005m.g Eutrema salsugineum HOM05D005476 ORTHO05D006886 1.1e-92 344.4 289 59.5
Aa31LG11G490 Aethionema arabicum HOM05D005476 ORTHO05D006886 1.9e-92 343.6 292 59.6
unitig_8.g3687 Utricularia gibba HOM05D005476 ORTHO05D006886 2.5e-92 343.2 326 54.0
AT5G58730 Arabidopsis thaliana HOM05D005476 ORTHO05D006886 4.3e-92 342.4 292 58.6
AUR62001646 Chenopodium quinoa HOM05D005476 ORTHO05D006886 5.6e-92 342.0 346 52.3
unitig_22.g5210 Utricularia gibba HOM05D005476 ORTHO05D006886 4.8e-91 339.0 357 51.8
BraA10t43679Z Brassica rapa HOM05D005476 ORTHO05D006886 8.1e-91 338.2 289 58.8
A10p15540 Brassica napus HOM05D005476 ORTHO05D006886 1.1e-90 337.8 289 58.1
CDE04G1962 Ceratophyllum demersum HOM05D005476 ORTHO05D006886 1.4e-90 337.4 289 56.7
C09p50810 Brassica napus HOM05D005476 ORTHO05D006886 4.0e-90 335.9 291 58.4
CARHR272640 Cardamine hirsuta HOM05D005476 ORTHO05D006886 6.9e-90 335.1 324 54.6
BolC9t57941H Brassica oleracea HOM05D005476 ORTHO05D006886 2.0e-89 333.6 291 58.1
Sp6g20420 Schrenkiella parvula HOM05D005476 ORTHO05D006886 2.0e-89 333.6 291 57.7
CsaV3_1G036180 Cucumis sativus L. HOM05D005476 ORTHO05D006886 2.6e-89 333.2 294 56.5
ATR0618G050 Amborella trichopoda HOM05D005476 ORTHO05D006886 1.2e-86 324.3 315 53.3
HPP92_002247 Vanilla planifolia HOM05D005476 ORTHO05D006886 2.1e-86 323.6 326 53.1
BcaC04g19834 Brassica carinata HOM05D005476 ORTHO05D006886 1.3e-85 320.9 291 57.0
arahy.Tifrunner.gnm1.ann1.70CJD0 Arachis hypogaea HOM05D005476 ORTHO05D006886 1.8e-85 320.5 239 67.8
SalBow8G4850 Salvia bowleyana HOM05D005476 ORTHO05D006886 1.4e-82 310.8 330 50.9
Os03g0737701 Oryza sativa ssp. japonica HOM05D005476 ORTHO05D006886 1.2e-81 307.8 339 51.0
SHI19142 Sapria himalayana HOM05D005476 ORTHO05D006886 1.0e-80 304.7 330 48.2
Zm00001eb056490 Zea mays HOM05D005476 ORTHO05D006886 1.1e-79 301.2 291 55.3
Lj1A137G45 Lonicera japonica HOM05D005476 ORTHO05D006886 7.2e-79 298.5 325 51.7
Oeu013433.3 Olea europaea HOM05D005476 ORTHO05D006886 3.9e-77 292.7 284 54.2
CDE02G0680 Ceratophyllum demersum HOM05D005476 ORTHO05D006886 4.3e-76 289.3 287 51.6
CBR_g23861 Chara braunii HOM05D005476 ORTHO05D006886 1.2e-65 254.6 300 45.0
Pp3c1_3930 Physcomitrium patens HOM05D005476 ORTHO05D006886 7.7e-65 251.9 294 44.2
SEGI_26423 Sequoiadendron giganteum HOM05D005476 ORTHO05D006886 1.0e-64 251.5 287 45.3
AagrBONN_evm.TU.Sc2ySwM_362.363 Anthoceros agrestis HOM05D005476 ORTHO05D006886 4.2e-63 246.1 278 46.8
SMO329G0019 Selaginella moellendorffii HOM05D005476 ORTHO05D006886 2.7e-62 243.4 267 46.1
Oeu000377.2 Olea europaea HOM05D005476 ORTHO05D006886 3.6e-62 243.0 262 51.5
Mapoly0060s0007 Marchantia polymorpha HOM05D005476 ORTHO05D006886 2.6e-60 236.9 264 45.1
Pp3c7_18020 Physcomitrium patens HOM05D005476 ORTHO05D006886 1.8e-58 230.7 291 40.2
AL1010U10010 Arabidopsis lyrata HOM05D005476 ORTHO05D006886 1.2e-57 228.0 194 59.8
Gohir.D05G089750 Gossypium hirsutum HOM05D005476 ORTHO05D006886 2.4e-50 203.8 163 60.1
A03p12050 Brassica napus HOM05D005476 ORTHO05D006886 3.0e-37 160.2 176 48.9
RcHm_v2.0_Chr6g0276161 Rosa chinensis HOM05D005476 ORTHO05D006886 2.2e-27 127.5 133 51.1
RcHm_v2.0_Chr7g0201761 Rosa chinensis HOM05D005476 ORTHO05D006886 5.0e-24 116.3 133 48.1
HanXRQChr16g0507541 Helianthus annuus HOM05D005476 ORTHO05D006886 4.7e-22 109.8 87 57.5
arahy.Tifrunner.gnm1.ann1.Y3WSKM Arachis hypogaea HOM05D005476 ORTHO05D006886 2.3e-21 107.5 86 60.5
SalBow8G2493 Salvia bowleyana HOM05D005476 ORTHO05D006886 4.0e-21 106.7 170 41.8
BraA03t10517Z Brassica rapa HOM05D005476 ORTHO05D006886 9.2e-18 95.5 107 47.7
RcHm_v2.0_Chr7g0242751 Rosa chinensis HOM05D005476 ORTHO05D006886 4.3e-15 86.7 86 53.5
C03p15890 Brassica napus HOM05D000062 ORTHO05D021669 1.1e-13 82.0 77 57.1
BolC3t14020H Brassica oleracea HOM05D000062 ORTHO05D006886 1.1e-13 82.0 77 57.1
Actinidia23243 Actinidia chinensis HOM05D005476 ORTHO05D006886 3.1e-13 80.5 66 62.1
SalBow5G5594 Salvia bowleyana HOM05D005476 ORTHO05D006886 2.1e-09 67.8 71 50.7
Pp3c11_9540 Physcomitrium patens HOM05D005476 ORTHO05D006886 2.7e-09 67.4 121 33.1
RcHm_v2.0_Chr6g0303391 Rosa chinensis HOM05D005476 ORTHO05D006886 1.2e-06 58.5 47 57.4
BolC4t22609H Brassica oleracea HOM05D005476 ORTHO05D032808 4.7e-06 56.6 38 68.4
ATR0691G298 Amborella trichopoda HOM05D000559 ORTHO05D000596 6.2e-06 56.2 122 32.8


User provided reference genes

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