Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.14G187200 Glycine max HOM05D006040 ORTHO05D007134 7.3e-186 653.7 315 100.0
Glyma.02G220600 Glycine max HOM05D006040 ORTHO05D007134 2.0e-151 539.3 380 72.9
Lalb_Chr10g0102951 Lupinus albus HOM05D006040 ORTHO05D007134 6.1e-124 448.0 382 60.5
VMungo0647G0797 Vigna mungo HOM05D006040 ORTHO05D007134 6.8e-123 444.5 375 61.9
Medtr5g068730 Medicago truncatula HOM05D006040 ORTHO05D007134 2.1e-116 422.9 390 57.4
LjContig00155g0021870 Lotus japonicus HOM05D006040 ORTHO05D007134 2.8e-116 422.5 381 58.0
TPR.G27916 Trifolium pratense HOM05D006040 ORTHO05D007134 2.8e-116 422.5 387 57.4
Ca_05537_v3 Cicer arietinum L. HOM05D006040 ORTHO05D007134 1.5e-114 416.8 377 58.9
Psat2g061600 Pisum sativum HOM05D006040 ORTHO05D007134 2.2e-113 412.9 378 58.5
arahy.Tifrunner.gnm1.ann1.53C9AK Arachis hypogaea HOM05D006040 ORTHO05D007134 3.5e-111 405.6 361 57.9
arahy.Tifrunner.gnm1.ann1.QSB9JP Arachis hypogaea HOM05D006040 ORTHO05D007134 7.8e-111 404.4 361 57.9
Prupe.2G322500 Prunus persica HOM05D006040 ORTHO05D007134 1.4e-96 357.1 376 50.5
Lj1g0004094 Lotus japonicus HOM05D006040 ORTHO05D007134 5.4e-96 355.1 331 57.7
TPR.G35913 Trifolium pratense HOM05D006040 ORTHO05D007134 2.3e-94 349.7 325 56.6
MD07G1303900 Malus domestica HOM05D006040 ORTHO05D007134 1.9e-93 346.7 374 50.5
Phvul.008G187700 Phaseolus vulgaris HOM05D006040 ORTHO05D007134 9.5e-93 344.4 308 58.8
Sed0006638 Sechium edule HOM05D006040 ORTHO05D007134 1.2e-92 344.0 362 48.9
Ca_16841_v3 Cicer arietinum L. HOM05D006040 ORTHO05D007134 2.1e-92 343.2 313 56.5
Psat5g070440 Pisum sativum HOM05D006040 ORTHO05D007134 2.1e-92 343.2 309 57.0
Cfa018660 Carpinus fangiana HOM05D006040 ORTHO05D007134 2.8e-92 342.8 376 50.0
Dinv29187 Davidia involucrata HOM05D006040 ORTHO05D007134 2.8e-92 342.8 387 49.9
FAN03G3503 Fragaria x ananassa HOM05D006040 ORTHO05D007134 2.8e-92 342.8 381 49.6
Lalb_Chr08g0239381 Lupinus albus HOM05D006040 ORTHO05D007134 2.8e-92 342.8 323 57.9
Medtr3g093420 Medicago truncatula HOM05D006040 ORTHO05D007134 4.7e-92 342.0 332 55.7
QL01p000066 Quercus lobata HOM05D006040 ORTHO05D007134 8.1e-92 341.3 375 49.3
ClCG02G007980 Citrullus lanatus HOM05D006040 ORTHO05D007134 1.1e-91 340.9 366 50.8
CANSAT21G0186 Cannabis sativa HOM05D006040 ORTHO05D007134 5.2e-91 338.6 360 50.3
FAN10G3876 Fragaria x ananassa HOM05D006040 ORTHO05D007134 6.8e-91 338.2 381 48.8
RcHm_v2.0_Chr1g0383341 Rosa chinensis HOM05D006040 ORTHO05D007134 2.0e-90 336.7 377 49.1
FAN10G2970 Fragaria x ananassa HOM05D006040 ORTHO05D007134 2.6e-90 336.3 381 48.6
Phvul.009G040600 Phaseolus vulgaris HOM05D006040 ORTHO05D007134 5.8e-90 335.1 337 55.2
Glyma.06G139400 Glycine max HOM05D006040 ORTHO05D007134 9.9e-90 334.3 326 56.1
CsaV3_2G035690 Cucumis sativus L. HOM05D006040 ORTHO05D007134 1.3e-89 334.0 364 49.2
CSS0020482 Camellia sinensis var. sinensis HOM05D006040 ORTHO05D007134 2.2e-89 333.2 353 51.8
MELO3C024776.2 Cucumis melo HOM05D006040 ORTHO05D007134 6.4e-89 331.6 364 49.5
FvH4_7g32290 Fragaria vesca HOM05D006040 ORTHO05D007134 1.4e-88 330.5 378 48.7
Actinidia18692 Actinidia chinensis HOM05D006040 ORTHO05D007134 2.4e-88 329.7 366 50.3
FAN20G2114 Fragaria x ananassa HOM05D006040 ORTHO05D007134 2.4e-88 329.7 378 48.4
TAR375G0263 Trochodendron aralioides HOM05D006040 ORTHO05D007134 7.1e-88 328.2 380 47.6
Lj3C891T14 Lonicera japonica HOM05D006040 ORTHO05D007134 7.8e-87 324.7 346 51.7
Rhsim09G0211300 Rhododendron simsii HOM05D006040 ORTHO05D007134 1.3e-86 323.9 353 50.4
PGR042G3864 Punica granatum HOM05D006040 ORTHO05D007134 6.6e-86 321.6 361 48.2
GSVIVG01038686001 Vitis vinifera HOM05D006040 ORTHO05D007134 1.1e-85 320.9 326 52.5
TWI13G0007 Tripterygium wilfordii HOM05D006040 ORTHO05D007134 1.5e-85 320.5 371 45.8
TWI74G0239 Tripterygium wilfordii HOM05D006040 ORTHO05D007134 1.5e-85 320.5 371 45.8
FAN06G3790 Fragaria x ananassa HOM05D006040 ORTHO05D007134 7.3e-85 318.2 370 47.8
Sabra12G0000200 Salix brachista HOM05D006040 ORTHO05D007134 1.6e-84 317.0 369 47.7
Potri.012G004300 Populus trichocarpa HOM05D006040 ORTHO05D007134 1.1e-83 314.3 369 47.2
Sc25g0001060 Simmondsia chinensis HOM05D006040 ORTHO05D007134 1.4e-83 313.9 317 52.1
Manes.05G196800 Manihot esculenta HOM05D006040 ORTHO05D007134 1.5e-82 310.5 374 46.5
EL10Ac3g05126 Beta vulgaris HOM05D006040 ORTHO05D007134 4.4e-82 308.9 324 51.9
Hund21080 Selenicereus undatus HOM05D006040 ORTHO05D007134 2.2e-81 306.6 329 48.0
PSO063G2217 Papaver somniferum HOM05D006040 ORTHO05D007134 2.9e-81 306.2 386 44.6
Cpa.g.sc3.191 Carica papaya HOM05D006040 ORTHO05D007134 4.9e-81 305.4 361 49.0
Eucgr.A00979 Eucalyptus grandis HOM05D006040 ORTHO05D007134 6.4e-81 305.1 378 45.0
Aqoxy3G00220 Aquilegia oxysepala HOM05D006040 ORTHO05D007134 1.1e-80 304.3 377 45.4
Os02g0106700 Oryza sativa ssp. japonica HOM05D006040 ORTHO05D007134 1.4e-80 303.9 331 48.0
SalBow2G1501 Salvia bowleyana HOM05D006040 ORTHO05D007134 2.4e-80 303.1 336 49.4
Hma1.2p1_1235F.1_g269220 Hydrangea macrophylla HOM05D006040 ORTHO05D007134 3.2e-80 302.8 361 46.8
Zm00001eb209800 Zea mays HOM05D006040 ORTHO05D007134 4.1e-80 302.4 331 49.5
Atru.chr12.2497 Acer truncatum HOM05D006040 ORTHO05D007134 2.3e-78 296.6 368 45.1
Atru.chr12.2521 Acer truncatum HOM05D006040 ORTHO05D007134 2.3e-78 296.6 368 45.1
AUR62005943 Chenopodium quinoa HOM05D006040 ORTHO05D007134 2.3e-78 296.6 331 48.0
Zm00001eb229510 Zea mays HOM05D006040 ORTHO05D007134 2.3e-78 296.6 331 48.0
PSO017G1458 Papaver somniferum HOM05D006040 ORTHO05D007134 5.1e-78 295.4 384 44.0
AUR62028121 Chenopodium quinoa HOM05D006040 ORTHO05D007134 8.7e-78 294.7 331 46.8
HanXRQChr14g0463001 Helianthus annuus HOM05D006040 ORTHO05D007134 4.3e-77 292.4 308 49.4
Thecc.03G212500 Theobroma cacao HOM05D006040 ORTHO05D007134 4.3e-77 292.4 345 46.7
Cc02_g00560 Coffea canephora HOM05D006040 ORTHO05D007134 3.6e-76 289.3 347 45.5
Gorai.004G126800 Gossypium raimondii HOM05D006040 ORTHO05D007134 6.2e-76 288.5 355 46.2
MSTRG.18 Avicennia marina HOM05D006040 ORTHO05D007134 8.1e-76 288.1 340 47.9
Peaxi162Scf00815g00228 Petunia axillaris HOM05D006040 ORTHO05D007134 5.2e-75 285.4 347 45.5
Migut.F00965 Erythranthe guttata HOM05D006040 ORTHO05D007134 4.4e-74 282.3 329 46.5
Sopen06g029320 Solanum pennellii HOM05D006040 ORTHO05D007134 4.4e-74 282.3 338 47.0
PGSC0003DMG400026928 Solanum tuberosum HOM05D006040 ORTHO05D007134 4.4e-74 282.3 345 47.0
Nitab4.5_0000115g0200 Nicotiana tabacum HOM05D006040 ORTHO05D007134 5.8e-74 282.0 342 45.6
Solyc06g072970.3 Solanum lycopersicum HOM05D006040 ORTHO05D007134 8.4e-73 278.1 338 46.4
ECA238G4129 Erigeron canadensis HOM05D006040 ORTHO05D007134 2.4e-72 276.6 334 44.3
HPP92_012812 Vanilla planifolia HOM05D006040 ORTHO05D007134 2.4e-72 276.6 341 43.4
ATR0579G018 Amborella trichopoda HOM05D006040 ORTHO05D007134 5.4e-72 275.4 336 45.8
CAN.G65.140 Capsicum annuum HOM05D006040 ORTHO05D007134 1.0e-70 271.2 330 46.7
Nitab4.5_0003012g0150 Nicotiana tabacum HOM05D006040 ORTHO05D007134 1.7e-70 270.4 383 41.5
SGA_v2.0_scaffold59G20786 Striga asiatica HOM05D006040 ORTHO05D007134 2.8e-68 263.1 327 45.3
DCAR_010554 Daucus carota HOM05D006040 ORTHO05D007134 3.6e-68 262.7 358 44.1
Lsat_1_v5_gn_8_36881 Lactuca sativa HOM05D006040 ORTHO05D007134 4.8e-68 262.3 312 42.9
unitig_578.g16670 Utricularia gibba HOM05D006040 ORTHO05D007134 4.8e-68 262.3 335 44.8
FvH4_7g33360 Fragaria vesca HOM05D006040 ORTHO05D007134 1.2e-66 257.7 301 49.2
THA.LOC104798996 Tarenaya hassleriana HOM05D006040 ORTHO05D007134 2.0e-66 256.9 354 43.5
AT5G24680 Arabidopsis thaliana HOM05D006040 ORTHO05D007134 1.8e-62 243.8 349 41.3
Gohir.A08G107000 Gossypium hirsutum HOM05D006040 ORTHO05D007134 2.3e-62 243.4 322 43.5
Thhalv10004343m.g Eutrema salsugineum HOM05D006040 ORTHO05D007134 2.5e-61 240.0 352 40.6
AL6G36290 Arabidopsis lyrata HOM05D006040 ORTHO05D007134 3.7e-60 236.1 341 41.3
A06p35530 Brassica napus HOM05D006040 ORTHO05D007134 8.1e-60 235.0 341 42.5
SEGI_40721 Sequoiadendron giganteum HOM05D006040 ORTHO05D007134 8.1e-60 235.0 394 36.3
BraA06t26478Z Brassica rapa HOM05D006040 ORTHO05D007134 1.4e-59 234.2 343 42.3
Carub.0006s2254 Capsella rubella HOM05D006040 ORTHO05D007134 1.4e-59 234.2 353 39.4
Sp2g22720 Schrenkiella parvula HOM05D006040 ORTHO05D007134 1.2e-58 231.1 344 41.0
C07p43010 Brassica napus HOM05D006040 ORTHO05D007134 4.5e-58 229.2 340 42.9
BolC7t44830H Brassica oleracea HOM05D006040 ORTHO05D007134 4.5e-58 229.2 340 42.9
FAN01G0445 Fragaria x ananassa HOM05D006040 ORTHO05D007134 4.5e-58 229.2 284 46.5
VMungo1309G2872 Vigna mungo HOM05D006040 ORTHO05D007134 5.8e-58 228.8 299 46.2
BcaNung01250 Brassica carinata HOM05D006040 ORTHO05D007134 8.7e-54 214.9 324 43.5
Haze_00002 Corylus avellana HOM05D006040 ORTHO05D007134 1.5e-50 204.1 201 52.7
Aa31LG11G3920 Aethionema arabicum HOM05D006040 ORTHO05D007134 4.2e-48 196.1 439 33.0
Glyma.04G225400 Glycine max HOM05D006040 ORTHO05D007134 4.3e-45 186.0 130 66.2
MBI12_g33183_MAGBIO Magnolia biondii HOM05D006040 ORTHO05D007134 6.3e-44 182.2 322 37.3
vmacro10175 Vaccinium macrocarpon HOM05D006040 ORTHO05D007134 3.1e-43 179.9 136 63.2
Pp3c12_6120 Physcomitrium patens HOM05D006040 ORTHO05D007134 1.5e-42 177.6 440 29.8
Pp3c13_14780 Physcomitrium patens HOM05D006040 ORTHO05D007134 2.0e-42 177.2 436 30.0
Pp3c20_10180 Physcomitrium patens HOM05D006040 ORTHO05D007134 3.4e-42 176.4 398 30.2
COL.COLO4_14403 Corchorus olitorius HOM05D002417 ORTHO05D002589 2.9e-41 173.3 194 47.9
Lalb_Chr14g0364691 Lupinus albus HOM05D006040 ORTHO05D007134 2.9e-41 173.3 205 47.8
MD01G1231800 Malus domestica HOM05D006040 ORTHO05D007134 4.2e-40 169.5 130 59.2
Duzib068G0842 Durio zibethinus HOM05D006040 ORTHO05D007134 4.6e-39 166.0 201 45.3
Pp3c25_2290 Physcomitrium patens HOM05D006040 ORTHO05D007134 7.9e-39 165.2 425 29.4
Gohir.D08G118000 Gossypium hirsutum HOM05D006040 ORTHO05D007134 4.2e-32 142.9 278 32.7
Mapoly0044s0025 Marchantia polymorpha HOM05D006040 ORTHO05D007134 1.0e-30 138.3 123 52.8
Mapoly0088s0074 Marchantia polymorpha HOM05D006040 ORTHO05D007134 1.4e-27 127.9 117 47.9
Oeu063747.1 Olea europaea HOM05D006040 ORTHO05D007134 9.1e-27 125.2 98 59.2
CARHR188790 Cardamine hirsuta HOM05D006040 ORTHO05D007134 2.6e-26 123.6 168 42.3
Pp3c23_1100 Physcomitrium patens HOM05D006040 ORTHO05D007134 5.0e-25 119.4 94 56.4
CBR_g3746 Chara braunii HOM05D000019 ORTHO05D000002 7.2e-24 115.5 137 41.6
SEGI_00936 Sequoiadendron giganteum HOM05D006040 ORTHO05D007134 1.2e-23 114.8 124 43.5
CBR_g29958 Chara braunii HOM05D006040 ORTHO05D007134 6.1e-23 112.5 127 43.3
SEGI_39404 Sequoiadendron giganteum HOM05D006040 ORTHO05D007134 6.1e-23 112.5 128 43.0
MD01G1231900 Malus domestica HOM05D006040 ORTHO05D007134 1.3e-17 94.7 67 64.2
Haze_17391 Corylus avellana HOM05D001765 ORTHO05D005876 4.0e-14 83.2 70 57.1
FvH4_7g33700 Fragaria vesca HOM05D006040 ORTHO05D007134 2.0e-13 80.9 238 29.8
SMO347G0626 Selaginella moellendorffii HOM05D006040 ORTHO05D007134 5.7e-13 79.3 152 36.2
CDE04G3558 Ceratophyllum demersum HOM05D006040 ORTHO05D007134 2.8e-12 77.0 58 63.8
SEGI_38707 Sequoiadendron giganteum HOM05D006040 ORTHO05D007134 9.1e-11 72.0 130 30.0
SalBow2G3456 Salvia bowleyana HOM05D000168 ORTHO05D007134 2.9e-09 67.0 38 73.7
Cre05.g240500 Chlamydomonas reinhardtii HOM05D006040 ORTHO05D007134 1.1e-08 65.1 141 29.8
Oeu063748.2 Olea europaea HOM05D003307 ORTHO05D003798 1.6e-07 61.2 51 47.1


User provided reference genes

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