Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.14G185633 Glycine max HOM05D003701 ORTHO05D004771 6.1e-61 237.3 118 100.0
Glyma.10G211400 Glycine max HOM05D003701 ORTHO05D004771 3.6e-45 184.9 99 91.9
arahy.Tifrunner.gnm1.ann1.V7IKH4 Arachis hypogaea HOM05D003701 ORTHO05D004771 8.1e-45 183.7 99 90.9
arahy.Tifrunner.gnm1.ann1.X76XU5 Arachis hypogaea HOM05D003701 ORTHO05D004771 8.1e-45 183.7 99 90.9
Glyma.20G179500 Glycine max HOM05D003701 ORTHO05D004771 8.1e-45 183.7 99 92.9
Ciclev10031547m.g Citrus clementina HOM05D003701 ORTHO05D004771 1.4e-44 183.0 99 90.9
TWI74G0111 Tripterygium wilfordii HOM05D003701 ORTHO05D004771 1.4e-44 183.0 111 82.0
TWI74G0263 Tripterygium wilfordii HOM05D003701 ORTHO05D004771 1.4e-44 183.0 111 82.0
Manes.10G045200 Manihot esculenta HOM05D003701 ORTHO05D004771 1.8e-44 182.6 99 89.9
Medtr1g095250 Medicago truncatula HOM05D003701 ORTHO05D004771 3.1e-44 181.8 100 89.0
CiPaw.01G273500 Carya illinoinensis HOM05D003701 ORTHO05D004771 4.0e-44 181.4 101 87.1
CiPaw.02G174300 Carya illinoinensis HOM05D003701 ORTHO05D004771 4.0e-44 181.4 101 87.1
Ca_10573_v3 Cicer arietinum L. HOM05D003701 ORTHO05D004771 4.0e-44 181.4 100 89.0
Ca_29596_v3 Cicer arietinum L. HOM05D003701 ORTHO05D004771 4.0e-44 181.4 100 89.0
Lalb_Chr06g0162271 Lupinus albus HOM05D003701 ORTHO05D004771 4.0e-44 181.4 99 90.9
Lj5g0008768 Lotus japonicus HOM05D003701 ORTHO05D004771 5.2e-44 181.0 99 88.9
Lalb_Chr02g0142141 Lupinus albus HOM05D003701 ORTHO05D004771 5.2e-44 181.0 100 88.0
VMungo0720G1162 Vigna mungo HOM05D003701 ORTHO05D004771 5.2e-44 181.0 99 89.9
ClCG08G007450 Citrullus lanatus HOM05D003701 ORTHO05D004771 6.8e-44 180.6 101 85.1
MELO3C019790.2 Cucumis melo HOM05D003701 ORTHO05D004771 6.8e-44 180.6 101 85.1
CsaV3_6G036360 Cucumis sativus L. HOM05D003701 ORTHO05D004771 6.8e-44 180.6 101 85.1
Atru.chr12.740 Acer truncatum HOM05D003701 ORTHO05D004771 8.9e-44 180.3 99 88.9
Gohir.A05G297100 Gossypium hirsutum HOM05D003701 ORTHO05D004771 8.9e-44 180.3 99 86.9
Psat6g184400 Pisum sativum HOM05D003701 ORTHO05D004771 8.9e-44 180.3 99 88.9
Sabra08G0027700 Salix brachista HOM05D003701 ORTHO05D004771 1.2e-43 179.9 102 87.3
TPR.G1904 Trifolium pratense HOM05D003701 ORTHO05D004771 1.2e-43 179.9 99 87.9
Gohir.D05G297000 Gossypium hirsutum HOM05D003701 ORTHO05D004771 1.5e-43 179.5 99 85.9
Gohir.D05G297025 Gossypium hirsutum HOM05D003701 ORTHO05D004771 1.5e-43 179.5 99 85.9
Gorai.009G314200 Gossypium raimondii HOM05D003701 ORTHO05D004771 1.5e-43 179.5 99 85.9
HPP92_012666 Vanilla planifolia HOM05D003701 ORTHO05D004771 1.5e-43 179.5 99 87.9
Thhalv10011486m.g Eutrema salsugineum HOM05D003701 ORTHO05D004771 2.0e-43 179.1 99 88.9
COL.COLO4_23690 Corchorus olitorius HOM05D003701 ORTHO05D004771 2.6e-43 178.7 99 85.9
Phvul.007G094200 Phaseolus vulgaris HOM05D003701 ORTHO05D004771 2.6e-43 178.7 99 88.9
Duzib106G0278 Durio zibethinus HOM05D003701 ORTHO05D004771 3.4e-43 178.3 99 85.9
QL08p056106 Quercus lobata HOM05D003701 ORTHO05D004771 3.4e-43 178.3 101 86.1
CANSAT56G3258 Cannabis sativa HOM05D003701 ORTHO05D004771 4.4e-43 177.9 99 85.9
Gohir.A10G206500 Gossypium hirsutum HOM05D003701 ORTHO05D004771 4.4e-43 177.9 99 85.9
Gohir.D10G214600 Gossypium hirsutum HOM05D003701 ORTHO05D004771 4.4e-43 177.9 99 85.9
Gorai.011G240200 Gossypium raimondii HOM05D003701 ORTHO05D004771 4.4e-43 177.9 99 85.9
Sabra10G0171500 Salix brachista HOM05D003701 ORTHO05D004771 4.4e-43 177.9 99 88.9
Cpa.g.sc53.71 Carica papaya HOM05D003701 ORTHO05D004771 5.8e-43 177.6 99 85.9
Sed0016616 Sechium edule HOM05D003701 ORTHO05D004771 5.8e-43 177.6 99 85.9
Duzib114G1041 Durio zibethinus HOM05D003701 ORTHO05D004771 7.5e-43 177.2 99 85.9
Potri.010G221600 Populus trichocarpa HOM05D003701 ORTHO05D004771 7.5e-43 177.2 99 88.9
THA.LOC104827296 Tarenaya hassleriana HOM05D003701 ORTHO05D004771 9.8e-43 176.8 99 87.9
MBI10_g04889_MAGBIO Magnolia biondii HOM05D003701 ORTHO05D004771 1.3e-42 176.4 99 86.9
Potri.008G040700 Populus trichocarpa HOM05D003701 ORTHO05D004771 1.3e-42 176.4 99 88.9
Eucgr.G02824 Eucalyptus grandis HOM05D003701 ORTHO05D004771 1.7e-42 176.0 101 84.2
MBI02_g43493_MAGBIO Magnolia biondii HOM05D003701 ORTHO05D004771 2.2e-42 175.6 99 86.9
Thecc.10G072600 Theobroma cacao HOM05D003701 ORTHO05D004771 2.2e-42 175.6 99 83.8
AL1G55580 Arabidopsis lyrata HOM05D003701 ORTHO05D004771 2.9e-42 175.3 99 87.9
AT1G48850 Arabidopsis thaliana HOM05D003701 ORTHO05D004771 2.9e-42 175.3 99 87.9
BcaB02g11304 Brassica carinata HOM05D003701 ORTHO05D004771 2.9e-42 175.3 99 87.9
BcaB04g17381 Brassica carinata HOM05D003701 ORTHO05D004771 2.9e-42 175.3 99 87.9
BcaC05g27549 Brassica carinata HOM05D003701 ORTHO05D004771 2.9e-42 175.3 99 87.9
BcaC07g37102 Brassica carinata HOM05D003701 ORTHO05D004771 2.9e-42 175.3 99 87.9
A05p20860 Brassica napus HOM05D003701 ORTHO05D004771 2.9e-42 175.3 99 87.9
A08p04400 Brassica napus HOM05D003701 ORTHO05D004771 2.9e-42 175.3 99 87.9
C05p35350 Brassica napus HOM05D003701 ORTHO05D004771 2.9e-42 175.3 99 87.9
C08p04710 Brassica napus HOM05D003701 ORTHO05D004771 2.9e-42 175.3 99 87.9
BolC5t32248H Brassica oleracea HOM05D003701 ORTHO05D004771 2.9e-42 175.3 99 87.9
BolC8t47272H Brassica oleracea HOM05D003701 ORTHO05D004771 2.9e-42 175.3 99 87.9
BraA05t20991Z Brassica rapa HOM05D003701 ORTHO05D004771 2.9e-42 175.3 99 87.9
Carub.0001s3800 Capsella rubella HOM05D003701 ORTHO05D004771 2.9e-42 175.3 99 87.9
CARHR038850 Cardamine hirsuta HOM05D003701 ORTHO05D004771 2.9e-42 175.3 99 87.9
Sp1g35740 Schrenkiella parvula HOM05D003701 ORTHO05D004771 2.9e-42 175.3 99 87.9
FvH4_7g19670 Fragaria vesca HOM05D003701 ORTHO05D004771 4.9e-42 174.5 99 86.9
FAN01G1080 Fragaria x ananassa HOM05D003701 ORTHO05D004771 4.9e-42 174.5 99 86.9
FAN03G0046 Fragaria x ananassa HOM05D003701 ORTHO05D004771 4.9e-42 174.5 99 86.9
FAN06G0474 Fragaria x ananassa HOM05D003701 ORTHO05D004771 4.9e-42 174.5 99 86.9
FAN10G2919 Fragaria x ananassa HOM05D003701 ORTHO05D004771 4.9e-42 174.5 99 86.9
Hund12041 Selenicereus undatus HOM05D003701 ORTHO05D004771 4.9e-42 174.5 99 83.8
BraA08t32466Z Brassica rapa HOM05D003701 ORTHO05D004771 6.4e-42 174.1 99 86.9
FAN10G2344 Fragaria x ananassa HOM05D003701 ORTHO05D004771 6.4e-42 174.1 99 86.9
AUR62037661 Chenopodium quinoa HOM05D003701 ORTHO05D004771 8.3e-42 173.7 109 78.9
SEGI_31492 Sequoiadendron giganteum HOM05D003701 ORTHO05D004771 8.3e-42 173.7 99 86.9
unitig_899.g14441 Utricularia gibba HOM05D003701 ORTHO05D004771 1.1e-41 173.3 101 84.2
ATR0115G006 Amborella trichopoda HOM05D003701 ORTHO05D004771 1.4e-41 172.9 99 83.8
Cc09_g02030 Coffea canephora HOM05D003701 ORTHO05D004771 1.9e-41 172.6 99 84.8
Hma1.2p1_1004F.1_g246800 Hydrangea macrophylla HOM05D003701 ORTHO05D004771 1.9e-41 172.6 99 85.9
PSO063G5795 Papaver somniferum HOM05D003701 ORTHO05D004771 1.9e-41 172.6 99 84.8
PSO339G3023 Papaver somniferum HOM05D003701 ORTHO05D004771 1.9e-41 172.6 99 84.8
Os03g0254800 Oryza sativa ssp. japonica HOM05D003701 ORTHO05D004771 2.4e-41 172.2 99 85.9
Prupe.2G214400 Prunus persica HOM05D003701 ORTHO05D004771 2.4e-41 172.2 100 84.0
TAR633G1876 Trochodendron aralioides HOM05D003701 ORTHO05D004771 2.4e-41 172.2 99 84.8
arahy.Tifrunner.gnm1.ann1.6FL4NC Arachis hypogaea HOM05D003701 ORTHO05D004771 3.2e-41 171.8 99 84.8
SGA_v2.0_scaffold51G18675 Striga asiatica HOM05D003701 ORTHO05D004771 3.2e-41 171.8 109 78.0
TAR623G1268 Trochodendron aralioides HOM05D003701 ORTHO05D004771 4.1e-41 171.4 99 83.8
MD01G1108900 Malus domestica HOM05D003701 ORTHO05D004771 5.4e-41 171.0 100 84.0
MD07G1175200 Malus domestica HOM05D003701 ORTHO05D004771 5.4e-41 171.0 100 84.0
Nn2g13085 Nelumbo nucifera HOM05D003701 ORTHO05D004771 7.1e-41 170.6 100 82.0
Dinv11780 Davidia involucrata HOM05D003701 ORTHO05D004771 9.2e-41 170.2 99 82.8
PGR142G1908 Punica granatum HOM05D003701 ORTHO05D004771 9.2e-41 170.2 99 80.8
SHI12194 Sapria himalayana HOM05D003666 ORTHO05D004770 9.2e-41 170.2 99 83.8
Sc06g0004590 Simmondsia chinensis HOM05D003701 ORTHO05D004771 9.2e-41 170.2 99 83.8
Aa31LG10G4830 Aethionema arabicum HOM05D003701 ORTHO05D004771 1.2e-40 169.9 99 82.8
AUR62041045 Chenopodium quinoa HOM05D003701 ORTHO05D004771 1.2e-40 169.9 109 78.0
Zm00001eb011020 Zea mays HOM05D003701 ORTHO05D004771 1.2e-40 169.9 99 83.8
arahy.Tifrunner.gnm1.ann1.914CGH Arachis hypogaea HOM05D003701 ORTHO05D004771 1.6e-40 169.5 99 83.8
MSTRG.367 Avicennia marina HOM05D003701 ORTHO05D004771 1.6e-40 169.5 99 81.8
CDE04G2332 Ceratophyllum demersum HOM05D003701 ORTHO05D004771 1.6e-40 169.5 99 82.8
Dinv31329 Davidia involucrata HOM05D003701 ORTHO05D004771 1.6e-40 169.5 99 82.8
Gohir.D10G214532 Gossypium hirsutum HOM05D003701 ORTHO05D004771 1.6e-40 169.5 99 81.8
Gorai.011G240100 Gossypium raimondii HOM05D003701 ORTHO05D004771 1.6e-40 169.5 99 81.8
RcHm_v2.0_Chr1g0363491 Rosa chinensis HOM05D003701 ORTHO05D004771 1.6e-40 169.5 101 84.2
Actinidia38848 Actinidia chinensis HOM05D003701 ORTHO05D004771 2.1e-40 169.1 109 77.1
Ah.06g192010 Amaranthus hybridus HOM05D003701 ORTHO05D004771 2.1e-40 169.1 99 80.8
DCAR_015315 Daucus carota HOM05D003701 ORTHO05D004771 2.1e-40 169.1 109 78.9
SMO146G0105 Selaginella moellendorffii HOM05D003701 ORTHO05D004771 2.1e-40 169.1 99 82.8
Sc09g0006470 Simmondsia chinensis HOM05D003701 ORTHO05D004771 2.1e-40 169.1 99 82.8
MSTRG.8153 Avicennia marina HOM05D003701 ORTHO05D004771 2.7e-40 168.7 99 81.8
CSS0025729 Camellia sinensis var. sinensis HOM05D003701 ORTHO05D004771 2.7e-40 168.7 99 82.8
Gohir.A10G206400 Gossypium hirsutum HOM05D003701 ORTHO05D004771 3.5e-40 168.3 99 80.8
CAN.G186.45 Capsicum annuum HOM05D003701 ORTHO05D004771 4.6e-40 167.9 99 82.8
Peaxi162Scf00747g00122 Petunia axillaris HOM05D003701 ORTHO05D004771 4.6e-40 167.9 99 82.8
Solyc04g009620.4 Solanum lycopersicum HOM05D003701 ORTHO05D004771 4.6e-40 167.9 99 82.8
Solyc04g049350.4 Solanum lycopersicum HOM05D003701 ORTHO05D004771 4.6e-40 167.9 99 82.8
Sopen04g019270 Solanum pennellii HOM05D003701 ORTHO05D004771 4.6e-40 167.9 99 82.8
PGSC0003DMG400016016 Solanum tuberosum HOM05D003701 ORTHO05D004771 4.6e-40 167.9 99 82.8
PGSC0003DMG400024392 Solanum tuberosum HOM05D003701 ORTHO05D004771 4.6e-40 167.9 99 82.8
Nitab4.5_0005490g0010 Nicotiana tabacum HOM05D003701 ORTHO05D004771 6.0e-40 167.5 99 82.8
Rhsim09G0152400 Rhododendron simsii HOM05D003701 ORTHO05D004771 6.0e-40 167.5 99 81.8
Sopen04g004770 Solanum pennellii HOM05D003701 ORTHO05D004771 6.0e-40 167.5 99 81.8
AagrBONN_evm.TU.Sc2ySwM_369.393 Anthoceros agrestis HOM05D003701 ORTHO05D004771 7.8e-40 167.2 99 82.8
Migut.F01774 Erythranthe guttata HOM05D003701 ORTHO05D004771 7.8e-40 167.2 99 80.8
Oeu027479.1 Olea europaea HOM05D003701 ORTHO05D004771 1.0e-39 166.8 98 81.6
vmacro04876 Vaccinium macrocarpon HOM05D003701 ORTHO05D004771 1.0e-39 166.8 99 82.8
GSVIVG01016288001 Vitis vinifera HOM05D003701 ORTHO05D004771 1.0e-39 166.8 100 82.0
Mapoly0007s0052 Marchantia polymorpha HOM05D003701 ORTHO05D004771 1.7e-39 166.0 99 81.8
Lsat_1_v5_gn_2_114381 Lactuca sativa HOM05D003701 ORTHO05D004771 6.6e-39 164.1 100 81.0
Lj1A914T43 Lonicera japonica HOM05D003701 ORTHO05D004771 6.6e-39 164.1 99 80.8
Pp3c1_35940 Physcomitrium patens HOM05D003701 ORTHO05D004771 8.6e-39 163.7 99 80.8
ECA232G2521 Erigeron canadensis HOM05D003701 ORTHO05D004771 1.5e-38 162.9 99 81.8
Aqoxy1G01249 Aquilegia oxysepala HOM05D003701 ORTHO05D004771 3.3e-38 161.8 100 79.0
CBR_g41627 Chara braunii HOM05D003701 ORTHO05D004771 3.3e-38 161.8 99 79.8
HanXRQChr09g0249701 Helianthus annuus HOM05D003701 ORTHO05D004771 5.6e-38 161.0 100 80.0
HanXRQChr15g0496661 Helianthus annuus HOM05D003701 ORTHO05D004771 7.3e-38 160.6 100 80.0
Nitab4.5_0001029g0070 Nicotiana tabacum HOM05D003701 ORTHO05D004771 9.5e-38 160.2 108 75.9
CSS0011231 Camellia sinensis var. sinensis HOM05D003701 ORTHO05D004771 3.6e-37 158.3 99 78.8
Migut.F01773 Erythranthe guttata HOM05D003701 ORTHO05D004771 3.6e-37 158.3 99 79.8
CANSAT78G2428 Cannabis sativa HOM05D003701 ORTHO05D004771 4.7e-37 157.9 99 75.8
Actinidia03057 Actinidia chinensis HOM05D003701 ORTHO05D004771 1.4e-36 156.4 99 77.8
GSVIVG01025176001 Vitis vinifera HOM05D003701 ORTHO05D004771 1.4e-36 156.4 99 74.7
Oeu007390.4 Olea europaea HOM05D003701 ORTHO05D004771 6.8e-36 154.1 99 76.8
DCAR_012659 Daucus carota HOM05D003701 ORTHO05D004771 8.9e-36 153.7 99 76.8
Zm00001eb398410 Zea mays HOM05D003701 ORTHO05D004771 2.0e-35 152.5 99 75.8
EL10Ac2g03249 Beta vulgaris HOM05D003701 ORTHO05D004771 4.4e-35 151.4 109 70.6
MCO05G587 Micromonas commoda HOM05D003701 ORTHO05D004771 7.6e-35 150.6 102 73.5
SalBow4G1339 Salvia bowleyana HOM05D003701 ORTHO05D004771 7.6e-35 150.6 98 76.5
CAN.G186.44 Capsicum annuum HOM05D003701 ORTHO05D004771 4.9e-34 147.9 99 70.7
Eucgr.J01090 Eucalyptus grandis HOM05D003701 ORTHO05D004771 4.9e-34 147.9 105 71.4
Cre03.g145747 Chlamydomonas reinhardtii HOM05D003701 ORTHO05D004771 8.4e-34 147.1 99 72.7
PRCOL_00001179 Prasinoderma coloniale HOM05D003701 ORTHO05D004771 2.4e-33 145.6 100 72.0
unitig_736.g22517 Utricularia gibba HOM05D003701 ORTHO05D004771 1.1e-28 130.2 74 81.1
Haze_27259 Corylus avellana HOM05D003701 ORTHO05D004771 2.2e-26 122.5 107 60.7
QL07p006097 Quercus lobata HOM05D003701 ORTHO05D030296 3.8e-26 121.7 78 76.9
TAR636G0034 Trochodendron aralioides HOM05D003701 ORTHO05D004771 8.4e-26 120.6 74 74.3
TAR636G0416 Trochodendron aralioides HOM05D003701 ORTHO05D004771 8.4e-26 120.6 74 74.3
RcHm_v2.0_Chr4g0427911 Rosa chinensis HOM05D003701 ORTHO05D004771 3.2e-25 118.6 103 64.1
Cfa022484 Carpinus fangiana HOM05D003701 ORTHO05D004771 2.8e-21 105.5 101 56.4
VMungo0647G0194 Vigna mungo HOM05D003701 ORTHO05D432816 4.5e-19 98.2 83 63.9
Oeu052763.1 Olea europaea HOM05D003701 ORTHO05D030296 7.6e-19 97.4 53 88.7
QL07p006183 Quercus lobata HOM05D003701 ORTHO05D030296 8.4e-18 94.0 55 83.6
QL09p045974 Quercus lobata HOM05D003701 ORTHO05D030296 8.4e-18 94.0 55 83.6
Oeu043945.1 Olea europaea HOM05D003701 ORTHO05D004771 8.1e-13 77.4 50 70.0
FAN12G0587 Fragaria x ananassa HOM05D003701 ORTHO05D004771 6.9e-12 74.3 68 55.9
MD01G1109200 Malus domestica HOM05D003701 ORTHO05D004771 1.2e-11 73.6 58 67.2
SMO173G0015 Selaginella moellendorffii HOM05D003701 ORTHO05D004771 1.9e-09 66.2 98 48.0


User provided reference genes

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