Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.14G183300 Glycine max HOM05D007802 ORTHO05D009879 1.7e-17 91.7 47 100.0
Glyma.02G216200 Glycine max HOM05D007802 ORTHO05D009879 4.5e-15 83.6 44 95.5
Phvul.008G183400 Phaseolus vulgaris HOM05D007802 ORTHO05D009879 1.5e-13 78.6 44 88.6
Medtr5g066760 Medicago truncatula HOM05D007802 ORTHO05D009879 2.7e-12 74.3 45 80.0
Lalb_Chr17g0344631 Lupinus albus HOM05D007802 ORTHO05D009879 4.7e-12 73.6 44 84.1
TPR.G38823 Trifolium pratense HOM05D007802 ORTHO05D009879 1.8e-11 71.6 43 81.4
MD08G1204300 Malus domestica HOM05D007802 ORTHO05D009879 2.3e-11 71.2 45 75.6
Ca_05474_v3 Cicer arietinum L. HOM05D007802 ORTHO05D009879 3.0e-11 70.9 43 81.4
arahy.Tifrunner.gnm1.ann1.6VNW8E Arachis hypogaea HOM05D007802 ORTHO05D009879 5.2e-11 70.1 44 79.5
arahy.Tifrunner.gnm1.ann1.J1FBU0 Arachis hypogaea HOM05D007802 ORTHO05D009879 5.2e-11 70.1 44 79.5
FvH4_5g34160 Fragaria vesca HOM05D007802 ORTHO05D009879 1.5e-10 68.6 44 75.0
Nn5g29812 Nelumbo nucifera HOM05D007802 ORTHO05D009879 2.6e-10 67.8 44 72.7
FvH4_4g29130 Fragaria vesca HOM05D007802 ORTHO05D009879 3.4e-10 67.4 45 71.1
FAN12G4209 Fragaria x ananassa HOM05D007802 ORTHO05D009879 3.4e-10 67.4 45 71.1
MD08G1204900 Malus domestica HOM05D007802 ORTHO05D009879 3.4e-10 67.4 45 71.1
Psat2g064360 Pisum sativum HOM05D007802 ORTHO05D009879 3.4e-10 67.4 43 76.7
RcHm_v2.0_Chr7g0233751 Rosa chinensis HOM05D007802 ORTHO05D009879 4.4e-10 67.0 45 66.7
AL4G35740 Arabidopsis lyrata HOM05D007802 ORTHO05D009879 5.7e-10 66.6 45 71.1
CARHR133150 Cardamine hirsuta HOM05D007802 ORTHO05D009879 9.8e-10 65.9 45 68.9
AT2G38465 Arabidopsis thaliana HOM05D007802 ORTHO05D009879 1.3e-09 65.5 45 68.9
CiPaw.08G057300 Carya illinoinensis HOM05D007802 ORTHO05D009879 2.2e-09 64.7 45 68.9
Prupe.1G536500 Prunus persica HOM05D007802 ORTHO05D009879 2.2e-09 64.7 45 68.9
Carub.0004s2044 Capsella rubella HOM05D007802 ORTHO05D009879 3.7e-09 63.9 45 66.7
Dinv42589 Davidia involucrata HOM05D007802 ORTHO05D009879 3.7e-09 63.9 44 72.7
TAR628G0546 Trochodendron aralioides HOM05D007802 ORTHO05D009879 3.7e-09 63.9 45 66.7
FAN07G2104 Fragaria x ananassa HOM05D007802 ORTHO05D009879 6.3e-09 63.2 45 66.7
BcaB02g09173 Brassica carinata HOM05D007802 ORTHO05D009879 1.1e-08 62.4 44 65.9
BcaNung02098 Brassica carinata HOM05D007802 ORTHO05D009879 1.1e-08 62.4 44 68.2
C07p40270 Brassica napus HOM05D007802 ORTHO05D009879 1.1e-08 62.4 44 68.2
BolC7t44562H Brassica oleracea HOM05D007802 ORTHO05D009879 1.1e-08 62.4 44 68.2
Manes.18G057100 Manihot esculenta HOM05D007802 ORTHO05D009879 1.1e-08 62.4 45 66.7
Cpa.g.sc21.44 Carica papaya HOM05D007802 ORTHO05D009879 2.4e-08 61.2 44 65.9
Sabra02G0086800 Salix brachista HOM05D007802 ORTHO05D009879 2.4e-08 61.2 45 64.4
Cfa013816 Carpinus fangiana HOM05D007802 ORTHO05D009879 3.1e-08 60.8 45 66.7
HPP92_025782 Vanilla planifolia HOM05D007802 ORTHO05D009879 4.1e-08 60.5 45 66.7
Aa31LG1G14150 Aethionema arabicum HOM05D007802 ORTHO05D009879 5.4e-08 60.1 44 65.9
BcaC02g11998 Brassica carinata HOM05D007802 ORTHO05D009879 5.4e-08 60.1 44 63.6
C04p09060 Brassica napus HOM05D007802 ORTHO05D009879 5.4e-08 60.1 44 63.6
BolC4t22496H Brassica oleracea HOM05D007802 ORTHO05D009879 5.4e-08 60.1 44 63.6
BraA05t19725Z Brassica rapa HOM05D007802 ORTHO05D009879 5.4e-08 60.1 44 63.6
Thhalv10017501m.g Eutrema salsugineum HOM05D007802 ORTHO05D009879 5.4e-08 60.1 44 61.4
GSVIVG01009214001 Vitis vinifera HOM05D007802 ORTHO05D009879 5.4e-08 60.1 45 64.4
QL09p018673 Quercus lobata HOM05D007802 ORTHO05D009879 7.0e-08 59.7 45 62.2
A04p29410 Brassica napus HOM05D007802 ORTHO05D009879 9.1e-08 59.3 44 63.6
Haze_22490 Corylus avellana HOM05D007802 ORTHO05D009879 9.1e-08 59.3 45 64.4
Eucgr.F00437 Eucalyptus grandis HOM05D007802 ORTHO05D009879 9.1e-08 59.3 45 60.0
A05p07580 Brassica napus HOM05D007802 ORTHO05D009879 1.2e-07 58.9 44 63.6
Cc10_g08360 Coffea canephora HOM05D007802 ORTHO05D009879 1.2e-07 58.9 45 60.0
THA.LOC104806901 Tarenaya hassleriana HOM05D007802 ORTHO05D009879 1.2e-07 58.9 44 65.9
Thecc.08G074100 Theobroma cacao HOM05D007802 ORTHO05D009879 1.2e-07 58.9 44 65.9
BcaB06g29053 Brassica carinata HOM05D007802 ORTHO05D009879 1.6e-07 58.5 45 57.8
Atru.chr13.972 Acer truncatum HOM05D007802 ORTHO05D009879 2.0e-07 58.2 45 57.8
Ciclev10002961m.g Citrus clementina HOM05D007802 ORTHO05D009879 3.5e-07 57.4 45 62.2
Sp4g20790 Schrenkiella parvula HOM05D007802 ORTHO05D009879 5.9e-07 56.6 45 64.4
CSS0046125 Camellia sinensis var. sinensis HOM05D007802 ORTHO05D009879 1.0e-06 55.8 44 61.4
MBI16_g07278_MAGBIO Magnolia biondii HOM05D007802 ORTHO05D009879 1.0e-06 55.8 44 59.1
Gohir.A05G216600 Gossypium hirsutum HOM05D007802 ORTHO05D009879 1.3e-06 55.5 45 57.8
AUR62019113 Chenopodium quinoa HOM05D007802 ORTHO05D009879 2.2e-06 54.7 44 61.4
Gohir.D05G220800 Gossypium hirsutum HOM05D007802 ORTHO05D009879 2.2e-06 54.7 45 57.8
Gorai.009G227900 Gossypium raimondii HOM05D007802 ORTHO05D009879 2.2e-06 54.7 45 57.8
Rhsim07G0213800 Rhododendron simsii HOM05D007802 ORTHO05D009879 2.2e-06 54.7 42 64.3
ClCG08G011540 Citrullus lanatus HOM05D007802 ORTHO05D009879 3.8e-06 53.9 44 61.4
CANSAT78G0113 Cannabis sativa HOM05D007802 ORTHO05D009879 5.0e-06 53.5 44 59.1
MELO3C011071.2 Cucumis melo HOM05D007802 ORTHO05D009879 5.0e-06 53.5 44 63.6
FAN08G3003 Fragaria x ananassa HOM05D007802 ORTHO05D009879 6.5e-06 53.1 73 45.2
FAN18G1081 Fragaria x ananassa HOM05D007802 ORTHO05D009879 6.5e-06 53.1 73 45.2


User provided reference genes

Program Settings