Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.14G182600 Glycine max HOM05D004648 ORTHO05D005782 5.9e-105 384.4 222 100.0
VMungo0647G0422 Vigna mungo HOM05D004648 ORTHO05D005782 4.0e-69 265.4 222 73.9
Lalb_Chr04g0252771 Lupinus albus HOM05D004648 ORTHO05D005782 9.5e-55 217.6 222 56.3
Nitab4.5_0000131g0120 Nicotiana tabacum HOM05D000239 ORTHO05D000484 4.7e-54 215.3 219 52.5
Nitab4.5_0011537g0010 Nicotiana tabacum HOM05D004648 ORTHO05D005782 1.4e-53 213.8 216 52.8
Cpa.g.sc21.29 Carica papaya HOM05D004648 ORTHO05D005782 3.0e-53 212.6 207 56.0
Ca_16010_v3 Cicer arietinum L. HOM05D004648 ORTHO05D005782 8.9e-53 211.1 208 57.7
Psat5g049360 Pisum sativum HOM05D004648 ORTHO05D005782 2.6e-52 209.5 215 56.3
PGSC0003DMG401009338 Solanum tuberosum HOM05D004648 ORTHO05D005782 3.4e-52 209.1 216 50.9
ClCG08G011630 Citrullus lanatus HOM05D004648 ORTHO05D005782 6.4e-51 204.9 209 55.0
Lj1g0017346 Lotus japonicus HOM05D004648 ORTHO05D005782 6.4e-51 204.9 211 54.0
CiPaw.08G056600 Carya illinoinensis HOM05D004648 ORTHO05D005782 8.3e-51 204.5 208 54.8
Oeu054771.1 Olea europaea HOM05D004648 ORTHO05D005782 8.3e-51 204.5 212 52.4
TPR.G6370 Trifolium pratense HOM05D004648 ORTHO05D005782 1.8e-50 203.4 208 55.8
Sopen04g030220 Solanum pennellii HOM05D004648 ORTHO05D005782 2.4e-50 203.0 216 51.4
MSTRG.24425 Avicennia marina HOM05D004648 ORTHO05D005782 4.1e-50 202.2 212 51.9
Duzib093G0339 Durio zibethinus HOM05D004648 ORTHO05D005782 5.4e-50 201.8 211 52.6
Medtr3g100100 Medicago truncatula HOM05D004648 ORTHO05D005782 5.4e-50 201.8 208 55.8
Solyc04g076470.1 Solanum lycopersicum HOM05D004648 ORTHO05D005782 5.4e-50 201.8 216 50.9
CANSAT25G1975 Cannabis sativa HOM05D004648 ORTHO05D005782 9.2e-50 201.1 209 51.2
MELO3C011082.2 Cucumis melo HOM05D004648 ORTHO05D005782 9.2e-50 201.1 209 54.1
CsaV3_2G030200 Cucumis sativus L. HOM05D004648 ORTHO05D005782 1.2e-49 200.7 209 54.1
Thecc.08G072400 Theobroma cacao HOM05D004648 ORTHO05D005782 2.0e-49 199.9 211 52.6
Glyma.04G095900 Glycine max HOM05D004648 ORTHO05D005782 2.7e-49 199.5 211 55.0
Gorai.009G228900 Gossypium raimondii HOM05D004648 ORTHO05D005782 5.9e-49 198.4 211 52.1
Glyma.06G097600 Glycine max HOM05D004648 ORTHO05D005782 1.3e-48 197.2 211 54.0
Sed0006831 Sechium edule HOM05D004648 ORTHO05D005782 1.3e-48 197.2 210 54.3
COL.COLO4_35262 Corchorus olitorius HOM05D004648 ORTHO05D005782 3.0e-48 196.1 211 52.1
Gohir.D05G221700 Gossypium hirsutum HOM05D004648 ORTHO05D005782 6.6e-48 194.9 211 52.1
Peaxi162Scf00454g10013 Petunia axillaris HOM05D004648 ORTHO05D005782 6.6e-48 194.9 216 48.1
RcHm_v2.0_Chr7g0235251 Rosa chinensis HOM05D004648 ORTHO05D005782 8.6e-48 194.5 212 50.9
Atru.chr13.996 Acer truncatum HOM05D004648 ORTHO05D005782 1.5e-47 193.7 211 49.8
Gohir.A05G219000 Gossypium hirsutum HOM05D004648 ORTHO05D005782 1.9e-47 193.4 212 51.4
Sabra02G0087800 Salix brachista HOM05D004648 ORTHO05D005782 1.9e-47 193.4 207 51.2
Prupe.1G533800 Prunus persica HOM05D004648 ORTHO05D005782 7.3e-47 191.4 211 50.7
Cfa013807 Carpinus fangiana HOM05D004648 ORTHO05D005782 1.2e-46 190.7 208 51.9
Duzib041G0289 Durio zibethinus HOM05D004648 ORTHO05D005782 3.6e-46 189.1 211 50.7
Eucgr.F00428 Eucalyptus grandis HOM05D004648 ORTHO05D005782 8.0e-46 188.0 207 51.7
HanXRQChr09g0250941 Helianthus annuus HOM05D004648 ORTHO05D005782 8.0e-46 188.0 210 49.0
Nn5g29856 Nelumbo nucifera HOM05D004648 ORTHO05D005782 1.0e-45 187.6 208 51.4
Potri.002G111300 Populus trichocarpa HOM05D004648 ORTHO05D005782 1.4e-45 187.2 209 49.3
QL09p018000 Quercus lobata HOM05D004648 ORTHO05D005782 1.8e-45 186.8 217 50.7
Phvul.009G035900 Phaseolus vulgaris HOM05D004648 ORTHO05D005782 3.1e-45 186.0 211 51.7
VMungo1309G1710 Vigna mungo HOM05D004648 ORTHO05D005782 5.2e-45 185.3 210 51.4
PGR042G2328 Punica granatum HOM05D004648 ORTHO05D005782 2.6e-44 183.0 212 49.1
MD15G1387400 Malus domestica HOM05D004648 ORTHO05D005782 4.4e-44 182.2 211 48.3
TWI12G1102 Tripterygium wilfordii HOM05D004648 ORTHO05D005782 4.4e-44 182.2 210 49.0
Cc10_g08430 Coffea canephora HOM05D004648 ORTHO05D005782 7.5e-44 181.4 210 47.1
TAR376G0132 Trochodendron aralioides HOM05D004648 ORTHO05D005782 7.5e-44 181.4 206 49.5
Manes.05G189800 Manihot esculenta HOM05D004648 ORTHO05D005782 9.8e-44 181.0 210 47.6
Migut.N02848 Erythranthe guttata HOM05D004648 ORTHO05D005782 1.3e-43 180.6 205 51.7
PSO541G6255 Papaver somniferum HOM05D004648 ORTHO05D005782 4.9e-43 178.7 207 49.3
DCAR_009556 Daucus carota HOM05D004648 ORTHO05D005782 1.9e-42 176.8 203 45.8
Ciclev10002461m.g Citrus clementina HOM05D004648 ORTHO05D005782 2.4e-42 176.4 211 49.3
vmacro04645 Vaccinium macrocarpon HOM05D004648 ORTHO05D005782 3.2e-42 176.0 216 49.1
MD08G1200200 Malus domestica HOM05D004648 ORTHO05D005782 7.0e-42 174.9 211 46.4
Lalb_Chr08g0242581 Lupinus albus HOM05D004648 ORTHO05D005782 1.6e-41 173.7 230 45.7
Aqoxy6G00847 Aquilegia oxysepala HOM05D004648 ORTHO05D005782 2.7e-41 172.9 206 48.1
CAN.G475.10 Capsicum annuum HOM05D004648 ORTHO05D005782 2.7e-41 172.9 224 44.6
Lj4C87T6 Lonicera japonica HOM05D004648 ORTHO05D005782 7.8e-41 171.4 175 55.4
CSS0033796 Camellia sinensis var. sinensis HOM05D004648 ORTHO05D005782 2.3e-40 169.9 210 48.6
CSS0043130 Camellia sinensis var. sinensis HOM05D004648 ORTHO05D005782 3.9e-40 169.1 210 48.6
Actinidia19623 Actinidia chinensis HOM05D004648 ORTHO05D005782 5.0e-40 168.7 205 47.3
FvH4_5g34561 Fragaria vesca HOM05D004648 ORTHO05D005782 6.6e-40 168.3 216 44.9
Dinv13591 Davidia involucrata HOM05D004648 ORTHO05D005782 8.6e-40 167.9 194 51.0
SGA_v2.0_scaffold48G17844 Striga asiatica HOM05D004648 ORTHO05D005782 1.1e-39 167.5 205 47.8
TAR628G0215 Trochodendron aralioides HOM05D004648 ORTHO05D005782 1.5e-39 167.2 208 46.6
SalBow5G0620 Salvia bowleyana HOM05D004648 ORTHO05D005782 1.9e-39 166.8 208 45.2
Actinidia06509 Actinidia chinensis HOM05D004648 ORTHO05D005782 3.3e-39 166.0 207 47.8
AUR62017983 Chenopodium quinoa HOM05D004648 ORTHO05D005782 1.6e-38 163.7 202 49.0
SalBow5G1021 Salvia bowleyana HOM05D004648 ORTHO05D005782 2.1e-38 163.3 208 44.2
Rhsim10G0173500 Rhododendron simsii HOM05D004648 ORTHO05D005782 3.6e-38 162.5 211 46.9
MBI16_g31265_MAGBIO Magnolia biondii HOM05D004648 ORTHO05D005782 1.1e-37 161.0 220 48.2
Ah.03g139860 Amaranthus hybridus HOM05D004648 ORTHO05D005782 1.4e-37 160.6 209 45.9
AUR62003673 Chenopodium quinoa HOM05D004648 ORTHO05D005782 1.4e-37 160.6 210 45.2
EL10Ac6g15193 Beta vulgaris HOM05D004648 ORTHO05D005782 2.3e-37 159.8 209 45.5
MD15G1310800 Malus domestica HOM05D004648 ORTHO05D005782 2.3e-37 159.8 210 44.3
RcHm_v2.0_Chr2g0111021 Rosa chinensis HOM05D004648 ORTHO05D005782 2.3e-37 159.8 208 46.2
Migut.K00806 Erythranthe guttata HOM05D004648 ORTHO05D005782 8.9e-37 157.9 206 43.2
Prupe.6G203100 Prunus persica HOM05D004648 ORTHO05D005782 8.9e-37 157.9 209 44.5
Sc16g0000570 Simmondsia chinensis HOM05D004648 ORTHO05D005782 8.9e-37 157.9 201 46.8
Nitab4.5_0010932g0010 Nicotiana tabacum HOM05D004648 ORTHO05D005782 1.2e-36 157.5 207 45.9
SGA_v2.0_scaffold45G17227 Striga asiatica HOM05D004648 ORTHO05D005782 1.5e-36 157.1 206 44.7
unitig_748.g7247 Utricularia gibba HOM05D000258 ORTHO05D001416 2.0e-36 156.8 208 45.2
Rhsim07G0212500 Rhododendron simsii HOM05D004648 ORTHO05D005782 7.5e-36 154.8 201 47.3
Cc07_g14000 Coffea canephora HOM05D004648 ORTHO05D005782 1.3e-35 154.1 209 42.1
Sc26g0003620 Simmondsia chinensis HOM05D004648 ORTHO05D005782 1.3e-35 154.1 205 41.5
ECA247G1048 Erigeron canadensis HOM05D004648 ORTHO05D005782 2.2e-35 153.3 204 40.2
FvH4_1g19520 Fragaria vesca HOM05D004648 ORTHO05D005782 3.7e-35 152.5 208 44.7
Zm00001eb235460 Zea mays HOM05D004648 ORTHO05D005782 3.7e-35 152.5 212 44.8
CiPaw.07G046500 Carya illinoinensis HOM05D004648 ORTHO05D005782 6.4e-35 151.8 207 43.5
QL06p035918 Quercus lobata HOM05D004648 ORTHO05D005782 6.4e-35 151.8 207 44.4
HanXRQChr02g0046211 Helianthus annuus HOM05D004648 ORTHO05D005782 1.1e-34 151.0 206 40.3
Hma1.2p1_0802F.1_g220630 Hydrangea macrophylla HOM05D004648 ORTHO05D005782 3.2e-34 149.4 208 43.8
Cfa006874 Carpinus fangiana HOM05D004648 ORTHO05D005782 1.2e-33 147.5 206 44.2
Haze_03885 Corylus avellana HOM05D004648 ORTHO05D005782 1.6e-33 147.1 206 44.7
PGSC0003DMG400016127 Solanum tuberosum HOM05D004648 ORTHO05D005782 2.7e-33 146.4 208 43.3
Lsat_1_v5_gn_8_20321 Lactuca sativa HOM05D004648 ORTHO05D005782 4.6e-33 145.6 212 40.1
DCAR_003444 Daucus carota HOM05D004648 ORTHO05D005782 7.8e-33 144.8 201 44.3
Manes.13G100500 Manihot esculenta HOM05D004648 ORTHO05D005782 1.3e-32 144.1 211 41.7
Solyc11g010720.1 Solanum lycopersicum HOM05D004648 ORTHO05D005782 1.7e-32 143.7 208 42.3
Sopen11g005530 Solanum pennellii HOM05D004648 ORTHO05D005782 2.3e-32 143.3 208 42.3
COL.COLO4_27367 Corchorus olitorius HOM05D004648 ORTHO05D005782 1.5e-31 140.6 216 39.8
ATR0767G042 Amborella trichopoda HOM05D004648 ORTHO05D005782 4.3e-31 139.0 204 43.1
HanXRQChr15g0485271 Helianthus annuus HOM05D004648 ORTHO05D005782 2.8e-30 136.3 188 44.7
Peaxi162Scf00085g00235 Petunia axillaris HOM05D004648 ORTHO05D005782 3.6e-30 136.0 196 43.4
SEGI_01557 Sequoiadendron giganteum HOM05D004648 ORTHO05D005782 4.7e-30 135.6 202 46.5
ECA232G0149 Erigeron canadensis HOM05D000476 ORTHO05D005719 1.1e-29 134.4 135 53.3
Gorai.007G058400 Gossypium raimondii HOM05D004648 ORTHO05D005782 1.4e-29 134.0 210 41.0
TWI74G0279 Tripterygium wilfordii HOM05D004648 ORTHO05D005782 2.3e-29 133.3 211 40.3
CAN.G252.11 Capsicum annuum HOM05D004648 ORTHO05D005782 5.2e-29 132.1 209 38.8
CDE02G1147 Ceratophyllum demersum HOM05D004648 ORTHO05D005782 8.9e-29 131.3 207 40.1
Duzib264G0833 Durio zibethinus HOM05D004648 ORTHO05D005782 8.9e-29 131.3 213 40.4
SEGI_08621 Sequoiadendron giganteum HOM05D004648 ORTHO05D005782 1.5e-28 130.6 198 43.9
HPP92_003649 Vanilla planifolia HOM05D004648 ORTHO05D005782 2.0e-28 130.2 215 40.5
Gohir.D11G053600 Gossypium hirsutum HOM05D004648 ORTHO05D005782 2.6e-28 129.8 209 40.2
Thecc.01G089300 Theobroma cacao HOM05D004648 ORTHO05D005782 5.8e-28 128.6 214 38.8
Gohir.A11G050200 Gossypium hirsutum HOM05D004648 ORTHO05D005782 7.6e-28 128.3 213 39.0
CDE04G0511 Ceratophyllum demersum HOM05D004648 ORTHO05D005782 9.9e-28 127.9 195 40.0
Os02g0204000 Oryza sativa ssp. japonica HOM05D004648 ORTHO05D005782 9.9e-28 127.9 136 55.1
THA.LOC104801678 Tarenaya hassleriana HOM05D004648 ORTHO05D005782 2.2e-27 126.7 217 37.3
Ah.05g171370 Amaranthus hybridus HOM05D004648 ORTHO05D005782 4.9e-27 125.6 220 37.3
CANSAT01G3166 Cannabis sativa HOM05D004648 ORTHO05D005782 6.4e-27 125.2 212 44.8
Carub.0008s2638 Capsella rubella HOM05D004648 ORTHO05D005782 1.6e-25 120.6 203 36.5
AT5G65520 Arabidopsis thaliana HOM05D004648 ORTHO05D005782 6.0e-25 118.6 199 36.7
DCAR_009557 Daucus carota HOM05D004648 ORTHO05D005782 6.0e-25 118.6 115 53.9
AL8G43110 Arabidopsis lyrata HOM05D004648 ORTHO05D005782 1.0e-24 117.9 199 36.2
EL10Ac1g00504 Beta vulgaris HOM05D004648 ORTHO05D005782 1.0e-24 117.9 216 37.0
Sc26g0002990 Simmondsia chinensis HOM05D004648 ORTHO05D005782 3.0e-24 116.3 135 45.2
Sc26g0002870 Simmondsia chinensis HOM05D004648 ORTHO05D005782 8.6e-24 114.8 135 45.9
A09p09070 Brassica napus HOM05D004648 ORTHO05D005782 3.3e-23 112.8 191 37.7
CARHR279500 Cardamine hirsuta HOM05D004648 ORTHO05D005782 3.3e-23 112.8 195 36.4
BraA09t36559Z Brassica rapa HOM05D004648 ORTHO05D005782 7.3e-23 111.7 191 37.7
Phvul.008G182701 Phaseolus vulgaris HOM05D004648 ORTHO05D307582 9.6e-23 111.3 95 82.1
BcaC04g23260 Brassica carinata HOM05D004648 ORTHO05D005782 1.2e-22 110.9 191 37.2
BolC9t53956H Brassica oleracea HOM05D004648 ORTHO05D005782 1.2e-22 110.9 191 37.2
Thhalv10005489m.g Eutrema salsugineum HOM05D004648 ORTHO05D005782 2.1e-22 110.2 195 36.4
C09p10560 Brassica napus HOM05D004648 ORTHO05D005782 2.8e-22 109.8 182 38.5
Mapoly0104s0024 Marchantia polymorpha HOM05D004648 ORTHO05D005782 2.8e-22 109.8 205 40.0
BcaB04g20019 Brassica carinata HOM05D004648 ORTHO05D005782 3.6e-22 109.4 193 35.8
Lj4g0004938 Lotus japonicus HOM05D004648 ORTHO05D005782 4.7e-22 109.0 206 37.4
arahy.Tifrunner.gnm1.ann1.AB919Y Arachis hypogaea HOM05D004648 ORTHO05D005782 8.1e-22 108.2 201 36.8
Lju188C4T4 Lonicera japonica HOM05D004648 ORTHO05D005782 8.1e-22 108.2 137 48.2
Sp2g28620 Schrenkiella parvula HOM05D004648 ORTHO05D005782 1.8e-21 107.1 191 36.6
Phvul.003G288400 Phaseolus vulgaris HOM05D004648 ORTHO05D005782 4.0e-21 105.9 203 35.5
arahy.Tifrunner.gnm1.ann1.S42CYX Arachis hypogaea HOM05D004648 ORTHO05D005782 5.2e-21 105.5 201 36.3
Glyma.08G278900 Glycine max HOM05D004648 ORTHO05D005782 7.6e-20 101.7 202 42.1
AagrBONN_evm.TU.Sc2ySwM_368.397 Anthoceros agrestis HOM05D004648 ORTHO05D005782 1.7e-19 100.5 204 34.8
Ca_22619_v3 Cicer arietinum L. HOM05D004648 ORTHO05D005782 6.0e-17 92.0 135 40.7
Psat4g116960 Pisum sativum HOM05D004648 ORTHO05D005782 6.0e-17 92.0 206 38.3
Medtr8g068400 Medicago truncatula HOM05D004648 ORTHO05D005782 1.3e-16 90.9 135 40.7
EL10Ac2g03122 Beta vulgaris HOM05D004648 ORTHO05D005782 3.8e-11 72.8 118 39.0


User provided reference genes

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