Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.14G180501 Glycine max HOM05D001083 ORTHO05D022300 1.2e-37 159.5 84 100.0
Gohir.A06G032624 Gossypium hirsutum HOM05D001083 ORTHO05D006562 1.5e-37 159.1 83 100.0
Glyma.02G212600 Glycine max HOM05D001083 ORTHO05D006562 2.0e-37 158.7 83 98.8
MBI06_g36047_MAGBIO Magnolia biondii HOM05D001083 ORTHO05D006562 2.0e-37 158.7 83 98.8
Glyma.04G092400 Glycine max HOM05D001083 ORTHO05D006562 3.4e-37 157.9 83 98.8
Lalb_Chr08g0242431 Lupinus albus HOM05D001083 ORTHO05D006562 3.4e-37 157.9 83 98.8
TAR381G1629 Trochodendron aralioides HOM05D001083 ORTHO05D006562 3.4e-37 157.9 83 98.8
Thecc.08G068600 Theobroma cacao HOM05D001083 ORTHO05D006562 4.4e-37 157.5 83 98.8
Gohir.D06G032300 Gossypium hirsutum HOM05D001083 ORTHO05D006562 5.7e-37 157.1 83 98.8
Gorai.010G035600 Gossypium raimondii HOM05D001083 ORTHO05D006562 5.7e-37 157.1 83 98.8
Manes.18G060600 Manihot esculenta HOM05D001083 ORTHO05D006562 5.7e-37 157.1 83 98.8
Nn5g29925 Nelumbo nucifera HOM05D001083 ORTHO05D001637 5.7e-37 157.1 83 97.6
Nitab4.5_0000131g0420 Nicotiana tabacum HOM05D001083 ORTHO05D006562 7.5e-37 156.8 83 97.6
Nitab4.5_0003300g0010 Nicotiana tabacum HOM05D001083 ORTHO05D006562 7.5e-37 156.8 83 97.6
PGR031G0272 Punica granatum HOM05D001083 ORTHO05D006562 7.5e-37 156.8 83 98.8
Ciclev10000603m.g Citrus clementina HOM05D001083 ORTHO05D006562 9.8e-37 156.4 83 96.4
Glyma.06G094300 Glycine max HOM05D001083 ORTHO05D006562 9.8e-37 156.4 83 97.6
Lj1g0024653 Lotus japonicus HOM05D001083 ORTHO05D006562 9.8e-37 156.4 83 97.6
QL09p017286 Quercus lobata HOM05D001083 ORTHO05D006562 9.8e-37 156.4 83 97.6
TAR381G0639 Trochodendron aralioides HOM05D001083 ORTHO05D006562 9.8e-37 156.4 83 97.6
Actinidia30816 Actinidia chinensis HOM05D001083 ORTHO05D006562 1.7e-36 155.6 83 96.4
arahy.Tifrunner.gnm1.ann1.4HU4LR Arachis hypogaea HOM05D001083 ORTHO05D006562 1.7e-36 155.6 83 97.6
arahy.Tifrunner.gnm1.ann1.R1F113 Arachis hypogaea HOM05D001083 ORTHO05D006562 1.7e-36 155.6 83 97.6
CiPaw.07G167500 Carya illinoinensis HOM05D001083 ORTHO05D006562 1.7e-36 155.6 83 96.4
Ca_05403_v3 Cicer arietinum L. HOM05D001083 ORTHO05D006562 1.7e-36 155.6 83 96.4
Gohir.A05G220900 Gossypium hirsutum HOM05D001083 ORTHO05D006562 1.7e-36 155.6 83 95.2
Gorai.009G230800 Gossypium raimondii HOM05D001083 ORTHO05D006562 1.7e-36 155.6 83 95.2
Lalb_Chr11g0065091 Lupinus albus HOM05D001083 ORTHO05D006562 1.7e-36 155.6 83 97.6
Medtr5g065880 Medicago truncatula HOM05D001083 ORTHO05D006562 1.7e-36 155.6 83 96.4
Peaxi162Scf00281g00319 Petunia axillaris HOM05D001083 ORTHO05D006562 1.7e-36 155.6 83 96.4
Phvul.008G180200 Phaseolus vulgaris HOM05D001083 ORTHO05D006562 1.7e-36 155.6 83 96.4
Psat2g066440 Pisum sativum HOM05D001083 ORTHO05D006562 1.7e-36 155.6 83 96.4
Prupe.1G528400 Prunus persica HOM05D001083 ORTHO05D006562 1.7e-36 155.6 83 97.6
TPR.G28355 Trifolium pratense HOM05D001083 ORTHO05D006562 1.7e-36 155.6 83 96.4
Duzib116G0753 Durio zibethinus HOM05D001083 ORTHO05D006562 2.2e-36 155.2 83 96.4
PSO017G5756 Papaver somniferum HOM05D001083 ORTHO05D006562 2.2e-36 155.2 83 96.4
VMungo0647G1287 Vigna mungo HOM05D001083 ORTHO05D006562 2.2e-36 155.2 83 95.2
Cpa.g.sc309.3 Carica papaya HOM05D001083 ORTHO05D006562 2.9e-36 154.8 83 95.2
Dinv44842 Davidia involucrata HOM05D001083 ORTHO05D006562 2.9e-36 154.8 83 94.0
ECA232G1336 Erigeron canadensis HOM05D001083 ORTHO05D006562 2.9e-36 154.8 83 95.2
LjContig00408g0023356 Lotus japonicus HOM05D001083 ORTHO05D006562 2.9e-36 154.8 83 96.4
MD15G1382200 Malus domestica HOM05D001083 ORTHO05D006562 2.9e-36 154.8 83 96.4
Nn1g05517 Nelumbo nucifera HOM05D001083 ORTHO05D006562 2.9e-36 154.8 83 97.6
Atru.chr13.1040 Acer truncatum HOM05D001083 ORTHO05D006562 3.7e-36 154.5 83 95.2
CANSAT25G1784 Cannabis sativa HOM05D001083 ORTHO05D006562 3.7e-36 154.5 83 95.2
CANSAT80G2842 Cannabis sativa HOM05D001083 ORTHO05D006562 3.7e-36 154.5 83 95.2
MD08G1194100 Malus domestica HOM05D001083 ORTHO05D006562 3.7e-36 154.5 83 96.4
TAR625G0337 Trochodendron aralioides HOM05D001083 ORTHO05D006562 3.7e-36 154.5 83 95.2
CSS0030378 Camellia sinensis var. sinensis HOM05D001083 ORTHO05D006562 4.9e-36 154.1 83 97.6
DCAR_009571 Daucus carota HOM05D001083 ORTHO05D006562 4.9e-36 154.1 83 95.2
Dinv42631 Davidia involucrata HOM05D001083 ORTHO05D006562 4.9e-36 154.1 81 100.0
HanXRQChr09g0250891 Helianthus annuus HOM05D001083 ORTHO05D006562 4.9e-36 154.1 83 95.2
PSO170G6218 Papaver somniferum HOM05D001083 ORTHO05D006562 4.9e-36 154.1 83 95.2
Phvul.009G143550 Phaseolus vulgaris HOM05D001083 ORTHO05D006562 4.9e-36 154.1 83 95.2
SEGI_39500 Sequoiadendron giganteum HOM05D001083 ORTHO05D006562 4.9e-36 154.1 83 95.2
Sopen04g030080 Solanum pennellii HOM05D001083 ORTHO05D022300 4.9e-36 154.1 83 95.2
TWI36G0898 Tripterygium wilfordii HOM05D001083 ORTHO05D006562 4.9e-36 154.1 83 94.0
VMungo1309G2048 Vigna mungo HOM05D001083 ORTHO05D006562 4.9e-36 154.1 83 95.2
Actinidia29614 Actinidia chinensis HOM05D001083 ORTHO05D006562 6.4e-36 153.7 83 96.4
CSS0034477 Camellia sinensis var. sinensis HOM05D001083 ORTHO05D006562 6.4e-36 153.7 83 95.2
CSS0045493 Camellia sinensis var. sinensis HOM05D001083 ORTHO05D006562 6.4e-36 153.7 83 95.2
Haze_22337 Corylus avellana HOM05D001083 ORTHO05D006562 6.4e-36 153.7 83 95.2
Solyc04g076090.3 Solanum lycopersicum HOM05D001083 ORTHO05D006562 6.4e-36 153.7 83 95.2
PGSC0003DMG400012910 Solanum tuberosum HOM05D001083 ORTHO05D006562 6.4e-36 153.7 83 95.2
EL10Ac1g01079 Beta vulgaris HOM05D001083 ORTHO05D006562 8.3e-36 153.3 83 94.0
Cfa013696 Carpinus fangiana HOM05D001083 ORTHO05D001637 8.3e-36 153.3 83 94.0
Cc10_g15670 Coffea canephora HOM05D001083 ORTHO05D006562 8.3e-36 153.3 83 95.2
Lsat_1_v5_gn_9_74041 Lactuca sativa HOM05D001083 ORTHO05D006562 8.3e-36 153.3 83 95.2
Oeu016836.1 Olea europaea HOM05D001083 ORTHO05D006562 8.3e-36 153.3 82 96.3
Potri.002G104000 Populus trichocarpa HOM05D001083 ORTHO05D006562 8.3e-36 153.3 83 96.4
Rhsim06G0073600 Rhododendron simsii HOM05D001083 ORTHO05D006562 8.3e-36 153.3 83 95.2
ATR0022G035 Amborella trichopoda HOM05D001083 ORTHO05D006562 1.1e-35 152.9 83 92.8
MSTRG.22176 Avicennia marina HOM05D001083 ORTHO05D006562 1.1e-35 152.9 82 96.3
CAN.G1375.13 Capsicum annuum HOM05D001083 ORTHO05D006562 1.1e-35 152.9 83 94.0
Eucgr.F02133 Eucalyptus grandis HOM05D001083 ORTHO05D006562 1.1e-35 152.9 83 95.2
MELO3C011104.2 Cucumis melo HOM05D001083 ORTHO05D006562 1.4e-35 152.5 83 91.6
Sed0003733 Sechium edule HOM05D001083 ORTHO05D006562 1.4e-35 152.5 83 91.6
Sc01g0001070 Simmondsia chinensis HOM05D001083 ORTHO05D006562 1.4e-35 152.5 83 92.8
TWI12G0831 Tripterygium wilfordii HOM05D001083 ORTHO05D006562 1.4e-35 152.5 83 95.2
ClCG08G011800 Citrullus lanatus HOM05D001083 ORTHO05D006562 1.8e-35 152.1 83 91.6
Sed0007911 Sechium edule HOM05D001083 ORTHO05D006562 1.8e-35 152.1 83 92.8
SGA_v2.0_scaffold28G11891 Striga asiatica HOM05D001083 ORTHO05D006562 1.8e-35 152.1 82 96.3
Aqoxy5G01325 Aquilegia oxysepala HOM05D001083 ORTHO05D006562 2.4e-35 151.8 83 94.0
AUR62019023 Chenopodium quinoa HOM05D001083 ORTHO05D006562 2.4e-35 151.8 83 92.8
AUR62027860 Chenopodium quinoa HOM05D001083 ORTHO05D006562 2.4e-35 151.8 83 92.8
Duzib041G0775 Durio zibethinus HOM05D001083 ORTHO05D006562 3.2e-35 151.4 83 94.0
FvH4_5g35680 Fragaria vesca HOM05D001083 ORTHO05D006562 3.2e-35 151.4 83 94.0
FAN04G2240 Fragaria x ananassa HOM05D001083 ORTHO05D006562 3.2e-35 151.4 83 94.0
FAN08G3511 Fragaria x ananassa HOM05D001083 ORTHO05D006562 3.2e-35 151.4 83 94.0
FAN13G1737 Fragaria x ananassa HOM05D001083 ORTHO05D006562 3.2e-35 151.4 83 94.0
FAN18G1491 Fragaria x ananassa HOM05D001083 ORTHO05D006562 3.2e-35 151.4 83 94.0
Os09g0465600 Oryza sativa ssp. japonica HOM05D001083 ORTHO05D006562 3.2e-35 151.4 83 92.8
CsaV3_2G030420 Cucumis sativus L. HOM05D001083 ORTHO05D006562 4.1e-35 151.0 83 90.4
Ah.05g170690 Amaranthus hybridus HOM05D001083 ORTHO05D006562 5.4e-35 150.6 83 92.8
GSVIVG01009147001 Vitis vinifera HOM05D001083 ORTHO05D006562 5.4e-35 150.6 83 94.0
Zm00001eb315420 Zea mays HOM05D001083 ORTHO05D006562 5.4e-35 150.6 83 91.6
Hund16868 Selenicereus undatus HOM05D001083 ORTHO05D006562 7.0e-35 150.2 83 91.6
RcHm_v2.0_Chr7g0237321 Rosa chinensis HOM05D001083 ORTHO05D006562 9.2e-35 149.8 83 92.8
HPP92_024662 Vanilla planifolia HOM05D001083 ORTHO05D022300 9.2e-35 149.8 83 94.0
BcaC09g50847 Brassica carinata HOM05D001083 ORTHO05D006562 1.2e-34 149.4 83 91.6
BcaNung04959 Brassica carinata HOM05D001083 ORTHO05D006562 1.2e-34 149.4 83 91.6
A01p15970 Brassica napus HOM05D001083 ORTHO05D006562 1.2e-34 149.4 83 91.6
C01p19950 Brassica napus HOM05D001083 ORTHO05D006562 1.2e-34 149.4 83 91.6
BolC1t01923H Brassica oleracea HOM05D001083 ORTHO05D006562 1.2e-34 149.4 83 91.6
BraA01t01531Z Brassica rapa HOM05D001083 ORTHO05D006562 1.2e-34 149.4 83 91.6
Lj4C734G7 Lonicera japonica HOM05D001083 ORTHO05D006562 1.2e-34 149.4 81 95.1
Manes.02G146400 Manihot esculenta HOM05D001083 ORTHO05D006562 1.2e-34 149.4 83 91.6
THA.LOC104800044 Tarenaya hassleriana HOM05D001083 ORTHO05D006562 1.2e-34 149.4 83 92.8
Aa31LG4G9700 Aethionema arabicum HOM05D001083 ORTHO05D006562 2.0e-34 148.7 83 91.6
A03p55440 Brassica napus HOM05D001083 ORTHO05D006562 2.0e-34 148.7 83 90.4
C07p53730 Brassica napus HOM05D001083 ORTHO05D006562 2.0e-34 148.7 83 90.4
BolC7t45864H Brassica oleracea HOM05D001083 ORTHO05D006562 2.0e-34 148.7 83 90.4
BraA03t14618Z Brassica rapa HOM05D001083 ORTHO05D006562 2.0e-34 148.7 83 90.4
CDE10G1263 Ceratophyllum demersum HOM05D001083 ORTHO05D006562 2.0e-34 148.7 83 94.0
Migut.N02863 Erythranthe guttata HOM05D001083 ORTHO05D006562 2.0e-34 148.7 82 93.9
AL7G28580 Arabidopsis lyrata HOM05D001083 ORTHO05D006562 4.6e-34 147.5 83 89.2
Sp7g22610 Schrenkiella parvula HOM05D001083 ORTHO05D006562 5.9e-34 147.1 83 90.4
Carub.0007s1644 Capsella rubella HOM05D001083 ORTHO05D006562 7.8e-34 146.7 83 88.0
CARHR232010 Cardamine hirsuta HOM05D001083 ORTHO05D006562 1.0e-33 146.4 83 88.0
Thhalv10024695m.g Eutrema salsugineum HOM05D001083 ORTHO05D006562 1.0e-33 146.4 83 89.2
SalBow2G2226 Salvia bowleyana HOM05D001083 ORTHO05D006562 1.0e-33 146.4 94 85.1
THA.LOC104806836 Tarenaya hassleriana HOM05D001083 ORTHO05D006562 1.0e-33 146.4 83 89.2
HPP92_024674 Vanilla planifolia HOM05D001083 ORTHO05D006562 1.0e-33 146.4 80 95.0
Os08g0478800 Oryza sativa ssp. japonica HOM05D001083 ORTHO05D006562 1.3e-33 146.0 83 88.0
SMO115G0176 Selaginella moellendorffii HOM05D001083 ORTHO05D006562 1.3e-33 146.0 83 90.4
AT4G24620 Arabidopsis thaliana HOM05D001083 ORTHO05D006562 1.7e-33 145.6 83 88.0
BcaC06g32870 Brassica carinata HOM05D001083 ORTHO05D006562 6.6e-33 143.7 81 88.9
CDE10G0693 Ceratophyllum demersum HOM05D001083 ORTHO05D022300 6.6e-33 143.7 81 93.8
Mapoly0057s0092 Marchantia polymorpha HOM05D001083 ORTHO05D006562 8.6e-33 143.3 83 86.7
Pp3c27_3970 Physcomitrium patens HOM05D001083 ORTHO05D006562 1.5e-32 142.5 83 85.5
Sabra02G0081500 Salix brachista HOM05D001083 ORTHO05D006562 5.6e-32 140.6 111 73.0
unitig_578.g16183 Utricularia gibba HOM05D001083 ORTHO05D006562 4.7e-31 137.5 105 74.3
SHI06379 Sapria himalayana HOM05D001083 ORTHO05D006562 3.1e-30 134.8 82 84.1
vmacro21321 Vaccinium macrocarpon HOM05D001083 ORTHO05D006562 3.2e-27 124.8 131 58.0
CDE10G0373 Ceratophyllum demersum HOM05D001083 ORTHO05D006562 2.3e-25 118.6 83 81.9
RcHm_v2.0_Chr7g0237251 Rosa chinensis HOM05D001083 ORTHO05D006562 1.3e-20 102.8 56 91.1
RcHm_v2.0_Chr7g0237311 Rosa chinensis HOM05D001083 ORTHO05D006562 1.7e-20 102.4 55 92.7
RcHm_v2.0_Chr6g0272701 Rosa chinensis HOM05D001083 ORTHO05D022300 1.9e-19 99.0 56 87.5
Pp3c16_3900 Physcomitrium patens HOM05D001083 ORTHO05D006562 6.6e-17 90.5 65 75.4
Zm00001eb101090 Zea mays HOM05D001083 ORTHO05D006562 2.8e-15 85.1 47 93.6
Cc05_g03780 Coffea canephora HOM05D001083 ORTHO05D022300 7.6e-13 77.0 38 100.0


User provided reference genes

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