Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.14G177700 Glycine max HOM05D003707 ORTHO05D004309 1.1e-163 580.1 326 100.0
Glyma.02G209600 Glycine max HOM05D003707 ORTHO05D004309 6.7e-150 534.3 327 88.1
VMungo0647G1227 Vigna mungo HOM05D003707 ORTHO05D004309 1.7e-108 396.7 331 70.4
Phvul.008G177200 Phaseolus vulgaris HOM05D003707 ORTHO05D004309 1.4e-102 377.1 324 68.5
Ca_16005_v3 Cicer arietinum L. HOM05D003707 ORTHO05D004309 1.1e-94 350.9 319 61.8
arahy.Tifrunner.gnm1.ann1.K5H584 Arachis hypogaea HOM05D003707 ORTHO05D004309 2.3e-94 349.7 315 59.7
Glyma.06G100100 Glycine max HOM05D003707 ORTHO05D004309 1.5e-93 347.1 318 61.0
arahy.Tifrunner.gnm1.ann1.NXYL2L Arachis hypogaea HOM05D003707 ORTHO05D004309 2.6e-93 346.3 315 59.0
Duzib093G2197 Durio zibethinus HOM05D003707 ORTHO05D004309 2.2e-92 343.2 318 60.4
QL02p002269 Quercus lobata HOM05D003707 ORTHO05D004309 2.9e-92 342.8 320 65.3
Lalb_Chr04g0253021 Lupinus albus HOM05D003707 ORTHO05D004309 8.3e-92 341.3 320 65.9
Thecc.08G101000 Theobroma cacao HOM05D003707 ORTHO05D004309 2.4e-91 339.7 318 65.1
Cfa017898 Carpinus fangiana HOM05D003707 ORTHO05D004309 3.2e-91 339.3 319 59.2
GSVIVG01009092001 Vitis vinifera HOM05D003707 ORTHO05D004309 2.3e-89 333.2 321 65.7
Gohir.A06G032900 Gossypium hirsutum HOM05D003707 ORTHO05D004309 3.9e-89 332.4 320 58.4
Gorai.010G037300 Gossypium raimondii HOM05D003707 ORTHO05D004309 4.3e-88 328.9 320 62.8
CiPaw.16G032500 Carya illinoinensis HOM05D003707 ORTHO05D004309 5.6e-88 328.6 319 62.7
Lj4C96G4 Lonicera japonica HOM05D003707 ORTHO05D004309 7.3e-88 328.2 321 57.6
TWI56G1284 Tripterygium wilfordii HOM05D003707 ORTHO05D004309 1.2e-87 327.4 319 57.7
Lalb_Chr11g0065241 Lupinus albus HOM05D003707 ORTHO05D004309 1.6e-87 327.0 306 62.4
MD08G1190000 Malus domestica HOM05D003707 ORTHO05D004309 2.1e-87 326.6 318 63.8
MD15G1377500 Malus domestica HOM05D003707 ORTHO05D004309 2.1e-87 326.6 318 64.8
Gohir.D06G033800 Gossypium hirsutum HOM05D003707 ORTHO05D004309 2.8e-87 326.2 320 62.2
Duzib041G0396 Durio zibethinus HOM05D003707 ORTHO05D004309 6.2e-87 325.1 318 57.9
Psat2g069400 Pisum sativum HOM05D003707 ORTHO05D004309 5.8e-85 318.5 318 58.5
Hma1.2p1_1180F.1_g264680 Hydrangea macrophylla HOM05D003707 ORTHO05D004309 1.7e-84 317.0 323 56.7
Haze_18252 Corylus avellana HOM05D003707 ORTHO05D004309 2.2e-84 316.6 319 57.7
Prupe.1G524200 Prunus persica HOM05D003707 ORTHO05D004309 2.2e-84 316.6 318 63.8
Gohir.A05G223200 Gossypium hirsutum HOM05D003707 ORTHO05D004309 3.8e-84 315.8 317 55.2
Lj1g0011682 Lotus japonicus HOM05D003707 ORTHO05D004309 3.8e-84 315.8 317 55.8
Gorai.009G233400 Gossypium raimondii HOM05D003707 ORTHO05D004309 6.4e-84 315.1 317 53.9
Gohir.D05G225900 Gossypium hirsutum HOM05D003707 ORTHO05D004309 1.1e-83 314.3 317 54.3
TPR.G12497 Trifolium pratense HOM05D003707 ORTHO05D004309 1.9e-83 313.5 368 53.3
FvH4_5g36300 Fragaria vesca HOM05D003707 ORTHO05D004309 1.6e-82 310.5 320 62.5
vmacro11166 Vaccinium macrocarpon HOM05D003707 ORTHO05D004309 3.0e-81 306.2 318 56.0
CSS0029872 Camellia sinensis var. sinensis HOM05D003707 ORTHO05D004309 4.3e-80 302.4 321 55.1
Cpa.g.sc36.188 Carica papaya HOM05D003707 ORTHO05D004309 5.6e-80 302.0 318 58.5
Cc00_g22270 Coffea canephora HOM05D003707 ORTHO05D004309 7.3e-80 301.6 320 59.4
FAN04G1986 Fragaria x ananassa HOM05D003707 ORTHO05D004309 1.6e-79 300.4 320 61.2
Hma1.2p1_1568F.1_g291110 Hydrangea macrophylla HOM05D003707 ORTHO05D004309 1.6e-79 300.4 320 55.0
Nitab4.5_0003374g0030 Nicotiana tabacum HOM05D003707 ORTHO05D004309 1.8e-78 297.0 319 54.9
RcHm_v2.0_Chr7g0238321 Rosa chinensis HOM05D003707 ORTHO05D004309 1.8e-78 297.0 325 60.6
Sopen04g029730 Solanum pennellii HOM05D003707 ORTHO05D004309 1.8e-78 297.0 319 54.5
VMungo1309G1468 Vigna mungo HOM05D003707 ORTHO05D004309 1.8e-78 297.0 318 55.0
Phvul.009G033700 Phaseolus vulgaris HOM05D003707 ORTHO05D004309 3.1e-78 296.2 322 55.3
Manes.18G063100 Manihot esculenta HOM05D003707 ORTHO05D004309 4.0e-78 295.8 318 61.0
Eucgr.F00380 Eucalyptus grandis HOM05D003707 ORTHO05D004309 5.2e-78 295.4 319 57.7
Solyc04g074760.3 Solanum lycopersicum HOM05D003707 ORTHO05D004309 1.2e-77 294.3 319 54.5
HanXRQChr05g0163201 Helianthus annuus HOM05D003707 ORTHO05D004309 1.5e-77 293.9 321 57.9
TWI12G0071 Tripterygium wilfordii HOM05D003707 ORTHO05D004309 2.0e-77 293.5 319 53.3
Rhsim06G0077200 Rhododendron simsii HOM05D003707 ORTHO05D004309 2.6e-77 293.1 370 49.7
TPR.G6353 Trifolium pratense HOM05D003707 ORTHO05D004309 2.6e-77 293.1 321 53.3
CAN.G1173.6 Capsicum annuum HOM05D003707 ORTHO05D004309 1.3e-76 290.8 319 52.7
Potri.002G101400 Populus trichocarpa HOM05D003707 ORTHO05D004309 1.1e-75 287.7 327 57.5
Medtr3g099600 Medicago truncatula HOM05D003707 ORTHO05D004309 1.9e-75 287.0 347 49.9
Atru.chr13.1112 Acer truncatum HOM05D003707 ORTHO05D004309 2.4e-75 286.6 323 55.1
Oeu024817.1 Olea europaea HOM05D003707 ORTHO05D004309 3.2e-75 286.2 321 53.3
Nitab4.5_0009374g0030 Nicotiana tabacum HOM05D003707 ORTHO05D004309 4.2e-75 285.8 319 54.2
CiPaw.15G045200 Carya illinoinensis HOM05D003707 ORTHO05D004309 9.3e-75 284.6 319 52.4
Actinidia29599 Actinidia chinensis HOM05D003707 ORTHO05D004309 1.2e-74 284.3 320 52.8
EL10Ac1g01138 Beta vulgaris HOM05D003707 ORTHO05D004309 1.2e-74 284.3 321 52.3
CsaV3_3G047770 Cucumis sativus L. HOM05D003707 ORTHO05D004309 6.0e-74 282.0 320 56.6
Lsat_1_v5_gn_6_105560 Lactuca sativa HOM05D003707 ORTHO05D004309 6.0e-74 282.0 321 57.9
DCAR_005285 Daucus carota HOM05D003707 ORTHO05D004309 1.0e-73 281.2 329 56.8
Actinidia10349 Actinidia chinensis HOM05D003707 ORTHO05D004309 1.3e-73 280.8 322 57.8
ECA246G0538 Erigeron canadensis HOM05D003707 ORTHO05D004309 1.3e-73 280.8 320 52.5
FAN13G1833 Fragaria x ananassa HOM05D003707 ORTHO05D004309 6.6e-73 278.5 285 62.8
Glyma.04G098500 Glycine max HOM05D003707 ORTHO05D004309 8.7e-73 278.1 273 57.5
PGR031G0663 Punica granatum HOM05D003707 ORTHO05D004309 3.3e-72 276.2 316 56.3
MSTRG.22171 Avicennia marina HOM05D003707 ORTHO05D004309 4.3e-72 275.8 319 52.7
FAN18G3842 Fragaria x ananassa HOM05D003707 ORTHO05D004309 4.3e-72 275.8 289 61.6
Ciclev10001810m.g Citrus clementina HOM05D003707 ORTHO05D004309 1.3e-71 274.2 318 52.8
Migut.N02874 Erythranthe guttata HOM05D003707 ORTHO05D004309 1.3e-71 274.2 321 50.8
Sed0003858 Sechium edule HOM05D003707 ORTHO05D004309 1.6e-71 273.9 320 56.6
THA.LOC104816564 Tarenaya hassleriana HOM05D003707 ORTHO05D004309 1.6e-71 273.9 319 55.5
Sed0001081 Sechium edule HOM05D003707 ORTHO05D004309 4.8e-71 272.3 318 50.6
PGSC0003DMG400030841 Solanum tuberosum HOM05D003707 ORTHO05D004309 8.1e-71 271.6 319 50.8
Hund16884 Selenicereus undatus HOM05D003707 ORTHO05D004309 1.4e-70 270.8 325 53.5
HanXRQChr10g0278171 Helianthus annuus HOM05D003707 ORTHO05D004309 3.1e-70 269.6 320 56.9
PGR031G2053 Punica granatum HOM05D003707 ORTHO05D004309 3.1e-70 269.6 321 52.6
MELO3C003545.2 Cucumis melo HOM05D003707 ORTHO05D004309 4.0e-70 269.2 320 55.0
PSO782G1937 Papaver somniferum HOM05D003707 ORTHO05D004309 1.5e-69 267.3 380 44.5
Psat5g050280 Pisum sativum HOM05D003707 ORTHO05D004309 1.5e-69 267.3 304 52.3
Sabra02G0079500 Salix brachista HOM05D003707 ORTHO05D004309 2.9e-68 263.1 393 47.1
SalBow2G0015 Salvia bowleyana HOM05D003707 ORTHO05D004309 8.4e-68 261.5 321 56.1
SalBow2G2952 Salvia bowleyana HOM05D003707 ORTHO05D004309 8.4e-68 261.5 321 56.1
PSO063G2842 Papaver somniferum HOM05D003707 ORTHO05D004309 3.2e-67 259.6 380 43.4
Ca_16033_v3 Cicer arietinum L. HOM05D003707 ORTHO05D004309 4.2e-67 259.2 367 46.3
CSS0014867 Camellia sinensis var. sinensis HOM05D003707 ORTHO05D004309 1.2e-66 257.7 320 54.1
CSS0001361 Camellia sinensis var. sinensis HOM05D003707 ORTHO05D004309 2.1e-66 256.9 320 54.1
Aa31LG9G14730 Aethionema arabicum HOM05D003707 ORTHO05D004309 5.6e-64 248.8 322 50.9
Dinv07080 Davidia involucrata HOM05D003707 ORTHO05D004309 7.4e-64 248.4 328 53.7
unitig_578.g16186 Utricularia gibba HOM05D003707 ORTHO05D004309 3.1e-62 243.0 335 45.4
CARHR260110 Cardamine hirsuta HOM05D003707 ORTHO05D004309 5.8e-61 238.8 323 47.4
ClCG11G014370 Citrullus lanatus HOM05D003707 ORTHO05D004309 2.2e-60 236.9 320 52.8
Sp6g08460 Schrenkiella parvula HOM05D003707 ORTHO05D004309 2.2e-60 236.9 318 51.3
SGA_v2.0_scaffold4G02188 Striga asiatica HOM05D003707 ORTHO05D004309 1.4e-59 234.2 319 48.9
BcaB01g02805 Brassica carinata HOM05D003707 ORTHO05D004309 2.1e-58 230.3 319 48.6
Thhalv10008342m.g Eutrema salsugineum HOM05D003707 ORTHO05D004309 6.0e-58 228.8 308 49.4
Nn4g24800 Nelumbo nucifera HOM05D003707 ORTHO05D004309 1.8e-57 227.3 376 46.0
AL6G41440 Arabidopsis lyrata HOM05D003707 ORTHO05D004309 1.6e-55 220.7 316 45.9
AT4G09060 Arabidopsis thaliana HOM05D003707 ORTHO05D004309 2.1e-55 220.3 316 47.2
Thhalv10028816m.g Eutrema salsugineum HOM05D003707 ORTHO05D004309 2.8e-55 219.9 287 44.6
ECA247G2086 Erigeron canadensis HOM05D003707 ORTHO05D004309 3.1e-54 216.5 325 44.3
unitig_8.g4846 Utricularia gibba HOM05D003707 ORTHO05D004309 9.0e-54 214.9 273 46.9
BraA06t24253Z Brassica rapa HOM05D003707 ORTHO05D004309 5.8e-53 212.2 291 51.5
BcaC01g04732 Brassica carinata HOM05D003707 ORTHO05D004309 7.6e-53 211.8 318 46.9
Carub.0001s1444 Capsella rubella HOM05D003707 ORTHO05D004309 7.6e-53 211.8 308 43.5
A06p10740 Brassica napus HOM05D003707 ORTHO05D004309 2.9e-52 209.9 291 51.9
C05p12640 Brassica napus HOM05D003707 ORTHO05D004309 3.8e-52 209.5 291 49.1
Peaxi162Scf00139g00014 Petunia axillaris HOM05D003707 ORTHO05D004309 3.8e-52 209.5 327 45.0
MSTRG.24439 Avicennia marina HOM05D003707 ORTHO05D004309 6.5e-52 208.8 256 48.8
Carub.0006s2764 Capsella rubella HOM05D003707 ORTHO05D004309 6.5e-52 208.8 316 46.5
C03p34360 Brassica napus HOM05D003707 ORTHO05D004309 1.4e-51 207.6 321 47.4
BcaB02g06540 Brassica carinata HOM05D003707 ORTHO05D004309 1.9e-51 207.2 292 44.9
A03p28420 Brassica napus HOM05D003707 ORTHO05D004309 7.1e-51 205.3 321 46.4
COL.COLO4_11998 Corchorus olitorius HOM05D003707 ORTHO05D004309 1.6e-50 204.1 316 42.1
AT1G14680 Arabidopsis thaliana HOM05D003707 ORTHO05D004309 2.1e-50 203.8 305 44.9
CARHR015180 Cardamine hirsuta HOM05D003707 ORTHO05D004309 2.1e-50 203.8 304 48.7
AUR62027820 Chenopodium quinoa HOM05D003707 ORTHO05D004309 5.1e-49 199.1 253 55.3
BraA03t12047Z Brassica rapa HOM05D003707 ORTHO05D004309 8.7e-49 198.4 349 37.0
BolC3t15746H Brassica oleracea HOM05D003707 ORTHO05D004309 3.3e-48 196.4 350 43.4
Sp1g13060 Schrenkiella parvula HOM05D003707 ORTHO05D004309 3.3e-48 196.4 304 41.1
AUR62018979 Chenopodium quinoa HOM05D003707 ORTHO05D004309 2.2e-47 193.7 252 54.8
Aqoxy3G04171 Aquilegia oxysepala HOM05D003707 ORTHO05D004309 6.3e-47 192.2 379 36.9
BcaC05g25387 Brassica carinata HOM05D003707 ORTHO05D004309 8.2e-47 191.8 294 48.3
AL1G26650 Arabidopsis lyrata HOM05D003707 ORTHO05D004309 4.1e-46 189.5 304 47.4
Hund26994 Selenicereus undatus HOM05D003707 ORTHO05D004309 3.4e-45 186.4 291 42.3
MD08G1189700 Malus domestica HOM05D003707 ORTHO05D004309 1.3e-44 184.5 193 54.4
A09p29580 Brassica napus HOM05D003707 ORTHO05D004309 2.1e-42 177.2 316 40.2
BraA09t38526Z Brassica rapa HOM05D003707 ORTHO05D004309 2.1e-42 177.2 316 40.2
BcaB01g01380 Brassica carinata HOM05D003707 ORTHO05D004309 9.7e-40 168.3 320 39.1
RcHm_v2.0_Chr3g0481851 Rosa chinensis HOM05D003707 ORTHO05D004309 6.9e-38 162.2 147 63.3
CANSAT25G0959 Cannabis sativa HOM05D003707 ORTHO05D004309 9.4e-35 151.8 314 35.7
Oeu029729.1 Olea europaea HOM05D003707 ORTHO05D004309 4.7e-34 149.4 123 62.6
Oeu029730.1 Olea europaea HOM05D003707 ORTHO05D004309 3.9e-33 146.4 167 51.5
Duzib114G0708 Durio zibethinus HOM05D003707 ORTHO05D004309 2.2e-31 140.6 152 53.9
Hma1.2p1_0526F.1_g172810 Hydrangea macrophylla HOM05D003707 ORTHO05D004309 2.8e-31 140.2 177 50.3
MBI03_g38469_MAGBIO Magnolia biondii HOM05D003707 ORTHO05D004309 3.1e-30 136.7 371 30.5
BolC5t30008H Brassica oleracea HOM05D000624 ORTHO05D000495 4.1e-30 136.3 260 44.2
HanXRQChr17g0556331 Helianthus annuus HOM05D003707 ORTHO05D004309 5.3e-30 136.0 208 39.9
Medtr5g064800 Medicago truncatula HOM05D009584 ORTHO05D011650 5.3e-30 136.0 288 39.2
MBI06_g46882_MAGBIO Magnolia biondii HOM05D003707 ORTHO05D004309 1.2e-29 134.8 164 45.7
MBI06_g47948_MAGBIO Magnolia biondii HOM05D003707 ORTHO05D004309 1.2e-29 134.8 164 45.7
RcHm_v2.0_Chr5g0049351 Rosa chinensis HOM05D003707 ORTHO05D004309 1.7e-28 131.0 123 58.5
ATR0618G286 Amborella trichopoda HOM05D003707 ORTHO05D004309 3.8e-28 129.8 309 34.6
MBI06_g34539_MAGBIO Magnolia biondii HOM05D003707 ORTHO05D004309 3.8e-28 129.8 174 46.6
Aqoxy5G03114 Aquilegia oxysepala HOM05D003707 ORTHO05D004309 5.0e-28 129.4 162 47.5
HPP92_025845 Vanilla planifolia HOM05D003707 ORTHO05D004309 8.5e-28 128.6 317 33.8
Sc23g0000420 Simmondsia chinensis HOM05D003707 ORTHO05D004309 4.2e-27 126.3 252 45.2
Duzib116G0740 Durio zibethinus HOM05D003707 ORTHO05D004309 5.5e-27 125.9 111 62.2
Cpa.g.sc36.189 Carica papaya HOM05D003707 ORTHO05D004309 2.7e-26 123.6 228 41.7
RcHm_v2.0_Chr7g0238301 Rosa chinensis HOM05D003707 ORTHO05D004309 1.4e-25 121.3 124 55.6
ClCG08G011330 Citrullus lanatus HOM05D003707 ORTHO05D004309 2.0e-24 117.5 288 34.7
MD08G1190200 Malus domestica HOM05D003707 ORTHO05D004309 1.7e-23 114.4 223 39.9
RcHm_v2.0_Chr3g0481861 Rosa chinensis HOM05D003707 ORTHO05D004309 6.3e-23 112.5 123 59.3
BcaC07g41551 Brassica carinata HOM05D003707 ORTHO05D032288 8.2e-23 112.1 262 34.4
Actinidia33120 Actinidia chinensis HOM05D003707 ORTHO05D004309 2.4e-22 110.5 176 43.8
CDE02G0255 Ceratophyllum demersum HOM05D003707 ORTHO05D004309 2.4e-22 110.5 195 39.0
RcHm_v2.0_Chr5g0045611 Rosa chinensis HOM05D003707 ORTHO05D004309 7.0e-22 109.0 124 58.9
MBI03_g47917_MAGBIO Magnolia biondii HOM05D003707 ORTHO05D004309 2.9e-20 103.6 376 26.3
RcHm_v2.0_Chr5g0045621 Rosa chinensis HOM05D003707 ORTHO05D004309 3.0e-17 93.6 193 38.3
EL10Ac4g09478 Beta vulgaris HOM05D029458 ORTHO05D004309 6.7e-17 92.4 92 55.4
C08p45530 Brassica napus HOM05D000624 ORTHO05D000495 9.7e-16 88.6 124 41.1
BolC8t52105H Brassica oleracea HOM05D000624 ORTHO05D000495 9.7e-16 88.6 124 41.1
Haze_21792 Corylus avellana HOM05D003707 ORTHO05D004309 1.4e-14 84.7 86 52.3
Os02g0831400 Oryza sativa ssp. japonica HOM05D003707 ORTHO05D004309 1.6e-13 81.3 258 31.0
CDE05G1426 Ceratophyllum demersum HOM05D003707 ORTHO05D004309 2.7e-13 80.5 111 45.0
RcHm_v2.0_Chr5g0040961 Rosa chinensis HOM05D003707 ORTHO05D004309 7.7e-13 79.0 95 53.7
Zm00001eb259540 Zea mays HOM05D003707 ORTHO05D004309 3.2e-11 73.6 315 27.3
Hma1.2p1_0526F.1_g172800 Hydrangea macrophylla HOM05D003707 ORTHO05D004309 6.1e-10 69.3 48 68.8
RcHm_v2.0_Chr5g0044811 Rosa chinensis HOM05D003707 ORTHO05D004309 4.0e-09 66.6 60 53.3
MELO3C030322.2 Cucumis melo HOM05D003707 ORTHO05D004309 5.2e-09 66.2 223 29.1
C09p37650 Brassica napus HOM05D003707 ORTHO05D004309 8.8e-09 65.5 217 29.5
BolC9t56595H Brassica oleracea HOM05D003707 ORTHO05D004309 8.8e-09 65.5 217 29.5
Mapoly0003s0015 Marchantia polymorpha HOM05D019185 ORTHO05D030113 1.3e-07 61.6 89 41.6
BcaB02g06537 Brassica carinata HOM05D003707 ORTHO05D004309 4.8e-07 59.7 46 63.0
Lsat_1_v5_gn_1_3000 Lactuca sativa HOM05D003707 ORTHO05D004309 1.4e-06 58.2 99 45.5
Pp3c4_27130 Physcomitrium patens HOM05D019185 ORTHO05D030113 4.1e-06 56.6 87 42.5
CsaV3_2G029910 Cucumis sativus L. HOM05D003707 ORTHO05D004309 9.1e-06 55.5 128 35.9


User provided reference genes

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