Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.14G177400 Glycine max HOM05D008046 ORTHO05D004477 6.3e-87 324.3 194 100.0
Glyma.02G209200 Glycine max HOM05D008046 ORTHO05D004477 2.1e-66 256.1 198 80.8
Phvul.008G176900 Phaseolus vulgaris HOM05D008046 ORTHO05D004477 1.5e-43 180.3 195 71.8
VMungo0647G1155 Vigna mungo HOM05D008046 ORTHO05D004477 1.1e-38 164.1 190 62.6
Lalb_Chr10g0102531 Lupinus albus HOM05D008046 ORTHO05D004477 3.3e-27 125.9 191 52.4
Glyma.06G100900 Glycine max HOM05D008046 ORTHO05D004477 1.1e-19 100.9 191 52.9
Lalb_Chr23g0270371 Lupinus albus HOM05D008046 ORTHO05D004477 1.1e-19 100.9 192 50.0
Lj1g0004298 Lotus japonicus HOM05D008046 ORTHO05D004477 3.6e-18 95.9 193 46.6
TPR.G24247 Trifolium pratense HOM05D008046 ORTHO05D004477 6.9e-17 91.7 193 46.1
Glyma.04G099200 Glycine max HOM05D008046 ORTHO05D004477 3.4e-16 89.4 174 50.6
Lalb_Chr08g0242201 Lupinus albus HOM05D008046 ORTHO05D004477 3.4e-16 89.4 196 46.9
Phvul.009G032900 Phaseolus vulgaris HOM05D008046 ORTHO05D004477 8.4e-15 84.7 174 49.4
Medtr5g064640 Medicago truncatula HOM05D008046 ORTHO05D004477 1.9e-14 83.6 174 43.7
COL.COLO4_12009 Corchorus olitorius HOM05D008046 ORTHO05D004477 4.2e-14 82.4 149 47.7
Psat0s5249g0040 Pisum sativum HOM05D008046 ORTHO05D004477 2.3e-12 76.6 171 44.4
QL02p002440 Quercus lobata HOM05D008046 ORTHO05D004477 5.1e-12 75.5 156 50.6
VMungo1383G2321 Vigna mungo HOM05D008046 ORTHO05D004477 5.1e-12 75.5 64 60.9
Duzib116G0877 Durio zibethinus HOM05D008046 ORTHO05D004477 1.1e-11 74.3 155 47.7
Oeu048965.1 Olea europaea HOM05D008046 ORTHO05D004477 1.5e-11 73.9 148 45.3
Medtr3g099490 Medicago truncatula HOM05D008046 ORTHO05D004477 3.3e-11 72.8 144 49.3
Thecc.08G102400 Theobroma cacao HOM05D008046 ORTHO05D004477 3.3e-11 72.8 166 47.0
Potri.002G100500 Populus trichocarpa HOM05D008046 ORTHO05D004477 4.3e-11 72.4 156 45.5
Potri.005G161700 Populus trichocarpa HOM05D008046 ORTHO05D004477 6.2e-10 68.6 157 49.7
GSVIVG01009081001 Vitis vinifera HOM05D008046 ORTHO05D004477 6.2e-10 68.6 152 46.7
Duzib093G0605 Durio zibethinus HOM05D008046 ORTHO05D004477 8.1e-10 68.2 152 48.7
TAR381G0533 Trochodendron aralioides HOM05D008046 ORTHO05D004477 1.4e-09 67.4 162 43.8
Duzib041G0197 Durio zibethinus HOM05D008046 ORTHO05D004477 4.0e-09 65.9 155 49.7
TAR625G0942 Trochodendron aralioides HOM05D008046 ORTHO05D004477 4.0e-09 65.9 156 36.5
Gohir.A01G132600 Gossypium hirsutum HOM05D008046 ORTHO05D004477 5.3e-09 65.5 151 39.7
TWI12G0518 Tripterygium wilfordii HOM05D008046 ORTHO05D004477 5.3e-09 65.5 154 40.9
PGR031G3049 Punica granatum HOM05D008046 ORTHO05D004477 9.0e-09 64.7 144 47.2
CSS0046665 Camellia sinensis var. sinensis HOM05D008046 ORTHO05D004477 1.2e-08 64.3 144 42.4
CSS0041686 Camellia sinensis var. sinensis HOM05D008046 ORTHO05D004477 2.0e-08 63.5 145 41.4
Sabra02G0078700 Salix brachista HOM05D008046 ORTHO05D004477 2.0e-08 63.5 42 71.4
Cc10_g06700 Coffea canephora HOM05D008046 ORTHO05D004477 4.5e-08 62.4 149 42.3
Haze_18268 Corylus avellana HOM05D008046 ORTHO05D004477 4.5e-08 62.4 154 48.1
Haze_18269 Corylus avellana HOM05D008046 ORTHO05D004477 4.5e-08 62.4 154 48.1
Nn5g30002 Nelumbo nucifera HOM05D008176 ORTHO05D004477 4.5e-08 62.4 144 31.9
CiPaw.15G046100 Carya illinoinensis HOM05D008046 ORTHO05D004477 7.6e-08 61.6 163 42.9
Lsat_1_v5_gn_1_3180 Lactuca sativa HOM05D008046 ORTHO05D004477 7.6e-08 61.6 146 44.5
Prupe.1G522800 Prunus persica HOM05D018381 ORTHO05D004477 7.6e-08 61.6 174 43.7
CSS0034401 Camellia sinensis var. sinensis HOM05D008046 ORTHO05D004477 1.3e-07 60.8 39 74.4
CSS0039341 Camellia sinensis var. sinensis HOM05D008046 ORTHO05D004477 1.3e-07 60.8 39 74.4
Hma1.2p1_1148F.1_g261600 Hydrangea macrophylla HOM05D008046 ORTHO05D004477 1.3e-07 60.8 163 38.7
Gohir.D02G084000 Gossypium hirsutum HOM05D008046 ORTHO05D004477 1.7e-07 60.5 57 63.2
Manes.02G149300 Manihot esculenta HOM05D008046 ORTHO05D004477 1.7e-07 60.5 164 44.5
Gorai.005G094600 Gossypium raimondii HOM05D008046 ORTHO05D004477 2.2e-07 60.1 47 72.3
SalBow5G1479 Salvia bowleyana HOM05D008046 ORTHO05D004477 2.9e-07 59.7 52 57.7
CiPaw.16G033000 Carya illinoinensis HOM05D008046 ORTHO05D004477 3.8e-07 59.3 172 45.9
Gohir.A02G076800 Gossypium hirsutum HOM05D008046 ORTHO05D004477 3.8e-07 59.3 49 67.3
Manes.18G064000 Manihot esculenta HOM05D008046 ORTHO05D004477 4.9e-07 58.9 45 62.2
FAN04G3140 Fragaria x ananassa HOM05D018381 ORTHO05D004477 8.4e-07 58.2 49 59.2
FAN13G0458 Fragaria x ananassa HOM05D018381 ORTHO05D004477 8.4e-07 58.2 49 59.2
FAN18G3731 Fragaria x ananassa HOM05D018381 ORTHO05D004477 8.4e-07 58.2 49 59.2
Solyc04g074680.1 Solanum lycopersicum HOM05D010872 ORTHO05D004477 8.4e-07 58.2 63 49.2
Aa31LG6G8650 Aethionema arabicum HOM05D010872 ORTHO05D013672 1.1e-06 57.8 49 61.2
FvH4_5g36590 Fragaria vesca HOM05D018381 ORTHO05D004477 1.1e-06 57.8 49 59.2
FAN08G1425 Fragaria x ananassa HOM05D018381 ORTHO05D004477 1.1e-06 57.8 49 59.2
Gohir.A06G033600 Gossypium hirsutum HOM05D037684 ORTHO05D004477 1.4e-06 57.4 47 68.1
Gohir.D06G034500 Gossypium hirsutum HOM05D037684 ORTHO05D004477 1.4e-06 57.4 47 68.1
Gorai.010G038000 Gossypium raimondii HOM05D037684 ORTHO05D004477 1.4e-06 57.4 47 68.1
THA.LOC104800226 Tarenaya hassleriana HOM05D009138 ORTHO05D011294 1.4e-06 57.4 68 51.5
Nn1g05455 Nelumbo nucifera HOM05D008046 ORTHO05D004477 1.9e-06 57.0 145 49.0
SGA_v2.0_scaffold45G17135 Striga asiatica HOM05D010872 ORTHO05D004477 1.9e-06 57.0 50 54.0
Aqoxy6G00716 Aquilegia oxysepala HOM05D008046 ORTHO05D004477 2.4e-06 56.6 152 39.5
TAR628G0226 Trochodendron aralioides HOM05D008046 ORTHO05D004477 2.4e-06 56.6 30 83.3
THA.LOC104809723 Tarenaya hassleriana HOM05D009138 ORTHO05D011294 3.2e-06 56.2 50 62.0
Cpa.g.sc36.179 Carica papaya HOM05D008046 ORTHO05D004477 4.2e-06 55.8 141 46.1
PGSC0003DMG400028893 Solanum tuberosum HOM05D000121 ORTHO05D000102 4.2e-06 55.8 61 49.2
Carub.0001s3286 Capsella rubella HOM05D010872 ORTHO05D013672 7.1e-06 55.1 77 46.8
Ciclev10002675m.g Citrus clementina HOM05D008046 ORTHO05D004477 7.1e-06 55.1 49 59.2
Gohir.D05G267950 Gossypium hirsutum HOM05D008046 ORTHO05D004477 7.1e-06 55.1 54 57.4
Gorai.009G280100 Gossypium raimondii HOM05D008046 ORTHO05D004477 7.1e-06 55.1 54 57.4
Lsat_1_v5_gn_6_104300 Lactuca sativa HOM05D008046 ORTHO05D004477 7.1e-06 55.1 42 64.3
RcHm_v2.0_Chr7g0242321 Rosa chinensis HOM05D018381 ORTHO05D004477 7.1e-06 55.1 56 51.8
unitig_32.g11784 Utricularia gibba HOM05D008046 ORTHO05D004477 7.1e-06 55.1 37 67.6
Carub.0001s2200 Capsella rubella HOM05D009138 ORTHO05D011294 9.3e-06 54.7 41 65.9
CsaV3_3G047680 Cucumis sativus L. HOM05D026294 ORTHO05D004477 9.3e-06 54.7 62 43.5
THA.LOC104816630 Tarenaya hassleriana HOM05D010872 ORTHO05D013672 9.3e-06 54.7 35 68.6


User provided reference genes

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